**************************************************************************** Note: By default, each nucleotide is identified by chainId.name#. So a common case would be B.A1689, meaning adenosine #1689 on chain B. One-letter base names for modified nucleotides are put in lower case (e.g., 'c' for 5MC). For further information about the output notation, please refer to the DSSR User Manual. Questions and suggestions are *always* welcome on the 3DNA Forum. Command: x3dna-dssr -i=7k63.pdb -o=7k63.out File name: 7k63.pdb no. of DNA/RNA chains: 2 [I=197,J=197] no. of nucleotides: 394 no. of atoms: 18330 no. of waters: 0 no. of metals: 0 **************************************************************************** List of 197 base pairs nt1 nt2 bp name Saenger LW DSSR 1 I.DG1 J.DC197 G-C WC 19-XIX cWW cW-W 2 I.DG2 J.DC196 G-C WC 19-XIX cWW cW-W 3 I.DG3 J.DC195 G-C WC 19-XIX cWW cW-W 4 I.DC4 J.DG194 C-G WC 19-XIX cWW cW-W 5 I.DT5 J.DA193 T-A WC 20-XX cWW cW-W 6 I.DG6 J.DC192 G-C WC 19-XIX cWW cW-W 7 I.DG7 J.DC191 G-C WC 19-XIX cWW cW-W 8 I.DA8 J.DT190 A-T WC 20-XX cWW cW-W 9 I.DC9 J.DG189 C-G WC 19-XIX cWW cW-W 10 I.DC10 J.DG188 C-G WC 19-XIX cWW cW-W 11 I.DC11 J.DG187 C-G WC 19-XIX cWW cW-W 12 I.DT12 J.DA186 T-A WC 20-XX cWW cW-W 13 I.DA13 J.DT185 A-T WC 20-XX cWW cW-W 14 I.DT14 J.DA184 T-A WC 20-XX cWW cW-W 15 I.DA15 J.DT183 A-T WC 20-XX cWW cW-W 16 I.DC16 J.DG182 C-G WC 19-XIX cWW cW-W 17 I.DG17 J.DC181 G-C WC 19-XIX cWW cW-W 18 I.DC18 J.DG180 C-G WC 19-XIX cWW cW-W 19 I.DG19 J.DC179 G-C WC 19-XIX cWW cW-W 20 I.DG20 J.DC178 G-C WC 19-XIX cWW cW-W 21 I.DC21 J.DG177 C-G WC 19-XIX cWW cW-W 22 I.DC22 J.DG176 C-G WC 19-XIX cWW cW-W 23 I.DG23 J.DC175 G-C WC 19-XIX cWW cW-W 24 I.DC24 J.DG174 C-G WC 19-XIX cWW cW-W 25 I.DC25 J.DG173 C-G WC 19-XIX cWW cW-W 26 I.DC26 J.DG172 C-G WC 19-XIX cWW cW-W 27 I.DT27 J.DA171 T-A WC 20-XX cWW cW-W 28 I.DG28 J.DC170 G-C WC 19-XIX cWW cW-W 29 I.DG29 J.DC169 G-C WC 19-XIX cWW cW-W 30 I.DA30 J.DT168 A-T WC 20-XX cWW cW-W 31 I.DG31 J.DC167 G-C WC 19-XIX cWW cW-W 32 I.DA32 J.DT166 A-T WC 20-XX cWW cW-W 33 I.DA33 J.DT165 A-T WC 20-XX cWW cW-W 34 I.DT34 J.DA164 T-A WC 20-XX cWW cW-W 35 I.DC35 J.DG163 C-G WC 19-XIX cWW cW-W 36 I.DC36 J.DG162 C-G WC 19-XIX cWW cW-W 37 I.DC37 J.DG161 C-G WC 19-XIX cWW cW-W 38 I.DG38 J.DC160 G-C WC 19-XIX cWW cW-W 39 I.DG39 J.DC159 G-C WC 19-XIX cWW cW-W 40 I.DT40 J.DA158 T-A WC 20-XX cWW cW-W 41 I.DG41 J.DC157 G-C WC 19-XIX cWW cW-W 42 I.DC42 J.DG156 C-G WC 19-XIX cWW cW-W 43 I.DC43 J.DG155 C-G WC 19-XIX cWW cW-W 44 I.DG44 J.DC154 G-C WC 19-XIX cWW cW-W 45 I.DA45 J.DT153 A-T WC 20-XX cWW cW-W 46 I.DG46 J.DC152 G-C WC 19-XIX cWW cW-W 47 I.DG47 J.DC151 G-C WC 19-XIX cWW cW-W 48 I.DC48 J.DG150 C-G WC 19-XIX cWW cW-W 49 I.DC49 J.DG149 C-G WC 19-XIX cWW cW-W 50 I.DG50 J.DC148 G-C WC 19-XIX cWW cW-W 51 I.DC51 J.DG147 C-G WC 19-XIX cWW cW-W 52 I.DT52 J.DA146 T-A WC 20-XX cWW cW-W 53 I.DC53 J.DG145 C-G WC 19-XIX cWW cW-W 54 I.DA54 J.DT144 A-T WC 20-XX cWW cW-W 55 I.DA55 J.DT143 A-T WC 20-XX cWW cW-W 56 I.DT56 J.DA142 T-A WC 20-XX cWW cW-W 57 I.DT57 J.DA141 T-A WC 20-XX cWW cW-W 58 I.DG58 J.DC140 G-C WC 19-XIX cWW cW-W 59 I.DG59 J.DC139 G-C WC 19-XIX cWW cW-W 60 I.DT60 J.DA138 T-A WC 20-XX cWW cW-W 61 I.DC61 J.DG137 C-G WC 19-XIX cWW cW-W 62 I.DG62 J.DC136 G-C WC 19-XIX cWW cW-W 63 I.DT63 J.DA135 T-A WC 20-XX cWW cW-W 64 I.DA64 J.DT134 A-T WC 20-XX cWW cW-W 65 I.DG65 J.DC133 G-C WC 19-XIX cWW cW-W 66 I.DA66 J.DT132 A-T WC 20-XX cWW cW-W 67 I.DC67 J.DG131 C-G WC 19-XIX cWW cW-W 68 I.DA68 J.DT130 A-T WC 20-XX cWW cW-W 69 I.DG69 J.DC129 G-C WC 19-XIX cWW cW-W 70 I.DC70 J.DG128 C-G WC 19-XIX cWW cW-W 71 I.DT71 J.DA127 T-A WC 20-XX cWW cW-W 72 I.DC72 J.DG126 C-G WC 19-XIX cWW cW-W 73 I.DT73 J.DA125 T-A WC 20-XX cWW cW-W 74 I.DA74 J.DT124 A-T WC 20-XX cWW cW-W 75 I.DG75 J.DC123 G-C WC 19-XIX cWW cW-W 76 I.DC76 J.DG122 C-G WC 19-XIX cWW cW-W 77 I.DA77 J.DT121 A-T WC 20-XX cWW cW-W 78 I.DC78 J.DG120 C-G WC 19-XIX cWW cW-W 79 I.DC79 J.DG119 C-G WC 19-XIX cWW cW-W 80 I.DG80 J.DC118 G-C WC 19-XIX cWW cW-W 81 I.DC81 J.DG117 C-G WC 19-XIX cWW cW-W 82 I.DT82 J.DA116 T-A WC 20-XX cWW cW-W 83 I.DT83 J.DA115 T-A WC 20-XX cWW cW-W 84 I.DA84 J.DT114 A-T WC 20-XX cWW cW-W 85 I.DA85 J.DT113 A-T WC 20-XX cWW cW-W 86 I.DA86 J.DT112 A-T WC 20-XX cWW cW-W 87 I.DC87 J.DG111 C-G WC 19-XIX cWW cW-W 88 I.DG88 J.DC110 G-C WC 19-XIX cWW cW-W 89 I.DC89 J.DG109 C-G WC 19-XIX cWW cW-W 90 I.DA90 J.DT108 A-T WC 20-XX cWW cW-W 91 I.DC91 J.DG107 C-G WC 19-XIX cWW cW-W 92 I.DG92 J.DC106 G-C WC 19-XIX cWW cW-W 93 I.DT93 J.DA105 T-A WC 20-XX cWW cW-W 94 I.DA94 J.DT104 A-T WC 20-XX cWW cW-W 95 I.DC95 J.DG103 C-G WC 19-XIX cWW cW-W 96 I.DG96 J.DC102 G-C WC 19-XIX cWW cW-W 97 I.DC97 J.DG101 C-G WC 19-XIX cWW cW-W 98 I.DG98 J.DC100 G-C WC 19-XIX cWW cW-W 99 I.DC99 J.DG99 C-G WC 19-XIX cWW cW-W 100 I.DT100 J.DA98 T-A WC 20-XX cWW cW-W 101 I.DG101 J.DC97 G-C WC 19-XIX cWW cW-W 102 I.DT102 J.DA96 T-A WC 20-XX cWW cW-W 103 I.DC103 J.DG95 C-G WC 19-XIX cWW cW-W 104 I.DC104 J.DG94 C-G WC 19-XIX cWW cW-W 105 I.DC105 J.DG93 C-G WC 19-XIX cWW cW-W 106 I.DC106 J.DG92 C-G WC 19-XIX cWW cW-W 107 I.DC107 J.DG91 C-G WC 19-XIX cWW cW-W 108 I.DG108 J.DC90 G-C WC 19-XIX cWW cW-W 109 I.DC109 J.DG89 C-G WC 19-XIX cWW cW-W 110 I.DG110 J.DC88 G-C WC 19-XIX cWW cW-W 111 I.DT111 J.DA87 T-A WC 20-XX cWW cW-W 112 I.DT112 J.DA86 T-A WC 20-XX cWW cW-W 113 I.DT113 J.DA85 T-A WC 20-XX cWW cW-W 114 I.DT114 J.DA84 T-A WC 20-XX cWW cW-W 115 I.DA115 J.DT83 A-T WC 20-XX cWW cW-W 116 I.DA116 J.DT82 A-T WC 20-XX cWW cW-W 117 I.DC117 J.DG81 C-G WC 19-XIX cWW cW-W 118 I.DC118 J.DG80 C-G WC 19-XIX cWW cW-W 119 I.DG119 J.DC79 G-C WC 19-XIX cWW cW-W 120 I.DC120 J.DG78 C-G WC 19-XIX cWW cW-W 121 I.DC121 J.DG77 C-G WC 19-XIX cWW cW-W 122 I.DA122 J.DT76 A-T WC 20-XX cWW cW-W 123 I.DA123 J.DT75 A-T WC 20-XX cWW cW-W 124 I.DG124 J.DC74 G-C WC 19-XIX cWW cW-W 125 I.DG125 J.DC73 G-C WC 19-XIX cWW cW-W 126 I.DG126 J.DC72 G-C WC 19-XIX cWW cW-W 127 I.DG127 J.DC71 G-C WC 19-XIX cWW cW-W 128 I.DA128 J.DT70 A-T WC 20-XX cWW cW-W 129 I.DT129 J.DA69 T-A WC 20-XX cWW cW-W 130 I.DT130 J.DA68 T-A WC 20-XX cWW cW-W 131 I.DA131 J.DT67 A-T WC 20-XX cWW cW-W 132 I.DC132 J.DG66 C-G WC 19-XIX cWW cW-W 133 I.DT133 J.DA65 T-A WC 20-XX cWW cW-W 134 I.DC134 J.DG64 C-G WC 19-XIX cWW cW-W 135 I.DC135 J.DG63 C-G WC 19-XIX cWW cW-W 136 I.DC136 J.DG62 C-G WC 19-XIX cWW cW-W 137 I.DT137 J.DA61 T-A WC 20-XX cWW cW-W 138 I.DA138 J.DT60 A-T WC 20-XX cWW cW-W 139 I.DG139 J.DC59 G-C WC 19-XIX cWW cW-W 140 I.DT140 J.DA58 T-A WC 20-XX cWW cW-W 141 I.DC141 J.DG57 C-G WC 19-XIX cWW cW-W 142 I.DT142 J.DA56 T-A WC 20-XX cWW cW-W 143 I.DC143 J.DG55 C-G WC 19-XIX cWW cW-W 144 I.DC144 J.DG54 C-G WC 19-XIX cWW cW-W 145 I.DA145 J.DT53 A-T WC 20-XX cWW cW-W 146 I.DG146 J.DC52 G-C WC 19-XIX cWW cW-W 147 I.DG147 J.DC51 G-C WC 19-XIX cWW cW-W 148 I.DC148 J.DG50 C-G WC 19-XIX cWW cW-W 149 I.DA149 J.DT49 A-T WC 20-XX cWW cW-W 150 I.DC150 J.DG48 C-G WC 19-XIX cWW cW-W 151 I.DG151 J.DC47 G-C WC 19-XIX cWW cW-W 152 I.DT152 J.DA46 T-A WC 20-XX cWW cW-W 153 I.DG153 J.DC45 G-C WC 19-XIX cWW cW-W 154 I.DT154 J.DA44 T-A WC 20-XX cWW cW-W 155 I.DC155 J.DG43 C-G WC 19-XIX cWW cW-W 156 I.DA156 J.DT42 A-T WC 20-XX cWW cW-W 157 I.DG157 J.DC41 G-C WC 19-XIX cWW cW-W 158 I.DA158 J.DT40 A-T WC 20-XX cWW cW-W 159 I.DT159 J.DA39 T-A WC 20-XX cWW cW-W 160 I.DA160 J.DT38 A-T WC 20-XX cWW cW-W 161 I.DT161 J.DA37 T-A WC 20-XX cWW cW-W 162 I.DA162 J.DT36 A-T WC 20-XX cWW cW-W 163 I.DT163 J.DA35 T-A WC 20-XX cWW cW-W 164 I.DA164 J.DT34 A-T WC 20-XX cWW cW-W 165 I.DC165 J.DG33 C-G WC 19-XIX cWW cW-W 166 I.DA166 J.DT32 A-T WC 20-XX cWW cW-W 167 I.DT167 J.DA31 T-A WC 20-XX cWW cW-W 168 I.DC168 J.DG30 C-G WC 19-XIX cWW cW-W 169 I.DC169 J.DG29 C-G WC 19-XIX cWW cW-W 170 I.DT170 J.DA28 T-A WC 20-XX cWW cW-W 171 I.DG171 J.DC27 G-C WC 19-XIX cWW cW-W 172 I.DT172 J.DA26 T-A WC 20-XX cWW cW-W 173 I.DG173 J.DC25 G-C WC 19-XIX cWW cW-W 174 I.DC174 J.DG24 C-G WC 19-XIX cWW cW-W 175 I.DA175 J.DT23 A-T WC 20-XX cWW cW-W 176 I.DT176 J.DA22 T-A WC 20-XX cWW cW-W 177 I.DG177 J.DC21 G-C WC 19-XIX cWW cW-W 178 I.DT178 J.DA20 T-A WC 20-XX cWW cW-W 179 I.DA179 J.DT19 A-T WC 20-XX cWW cW-W 180 I.DT180 J.DA18 T-A WC 20-XX cWW cW-W 181 I.DT181 J.DA17 T-A WC 20-XX cWW cW-W 182 I.DG182 J.DC16 G-C WC 19-XIX cWW cW-W 183 I.DA183 J.DT15 A-T WC 20-XX cWW cW-W 184 I.DA184 J.DT14 A-T WC 20-XX cWW cW-W 185 I.DC185 J.DG13 C-G WC 19-XIX cWW cW-W 186 I.DA186 J.DT12 A-T WC 20-XX cWW cW-W 187 I.DG187 J.DC11 G-C WC 19-XIX cWW cW-W 188 I.DC188 J.DG10 C-G WC 19-XIX cWW cW-W 189 I.DG189 J.DC9 G-C WC 19-XIX cWW cW-W 190 I.DA190 J.DT8 A-T WC 20-XX cWW cW-W 191 I.DC191 J.DG7 C-G WC 19-XIX cWW cW-W 192 I.DC192 J.DG6 C-G WC 19-XIX cWW cW-W 193 I.DA193 J.DT5 A-T WC 20-XX cWW cW-W 194 I.DC194 J.DG4 C-G WC 19-XIX cWW cW-W 195 I.DC195 J.DG3 C-G WC 19-XIX cWW cW-W 196 I.DC196 J.DG2 C-G WC 19-XIX cWW cW-W 197 I.DC197 J.DG1 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 1 helix Note: a helix is defined by base-stacking interactions, regardless of bp type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=197 strand-1 5'-GGGCTGGACCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGACCACCCC-3' bp-type ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-CCCGACCTGGGATATGCGCCGGCGGGACCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATCAGAGGTCCGTGCACAGTCTATATATGTAGGACACGTACATAACTTGTCGCTGGTGGGG-5' helix-form B...BBBBBBB....BBBBBBBBBBBBBBBBBBBB.BBBBB..BB.BBBBBB.B.BBBBBBB.BB.BBBBBBBBBBBBBBBBBBBBBBBBBB.BBBBBBBBBBBBBBBBBBBB..BBBB.BBBBBB..BBBBBBBBB..BBBB..BBBBBBBBB.BB.BBBBBBBBBBBBBBBB.....B.B....BBBBB....B 1 I.DG1 J.DC197 G-C WC 19-XIX cWW cW-W 2 I.DG2 J.DC196 G-C WC 19-XIX cWW cW-W 3 I.DG3 J.DC195 G-C WC 19-XIX cWW cW-W 4 I.DC4 J.DG194 C-G WC 19-XIX cWW cW-W 5 I.DT5 J.DA193 T-A WC 20-XX cWW cW-W 6 I.DG6 J.DC192 G-C WC 19-XIX cWW cW-W 7 I.DG7 J.DC191 G-C WC 19-XIX cWW cW-W 8 I.DA8 J.DT190 A-T WC 20-XX cWW cW-W 9 I.DC9 J.DG189 C-G WC 19-XIX cWW cW-W 10 I.DC10 J.DG188 C-G WC 19-XIX cWW cW-W 11 I.DC11 J.DG187 C-G WC 19-XIX cWW cW-W 12 I.DT12 J.DA186 T-A WC 20-XX cWW cW-W 13 I.DA13 J.DT185 A-T WC 20-XX cWW cW-W 14 I.DT14 J.DA184 T-A WC 20-XX cWW cW-W 15 I.DA15 J.DT183 A-T WC 20-XX cWW cW-W 16 I.DC16 J.DG182 C-G WC 19-XIX cWW cW-W 17 I.DG17 J.DC181 G-C WC 19-XIX cWW cW-W 18 I.DC18 J.DG180 C-G WC 19-XIX cWW cW-W 19 I.DG19 J.DC179 G-C WC 19-XIX cWW cW-W 20 I.DG20 J.DC178 G-C WC 19-XIX cWW cW-W 21 I.DC21 J.DG177 C-G WC 19-XIX cWW cW-W 22 I.DC22 J.DG176 C-G WC 19-XIX cWW cW-W 23 I.DG23 J.DC175 G-C WC 19-XIX cWW cW-W 24 I.DC24 J.DG174 C-G WC 19-XIX cWW cW-W 25 I.DC25 J.DG173 C-G WC 19-XIX cWW cW-W 26 I.DC26 J.DG172 C-G WC 19-XIX cWW cW-W 27 I.DT27 J.DA171 T-A WC 20-XX cWW cW-W 28 I.DG28 J.DC170 G-C WC 19-XIX cWW cW-W 29 I.DG29 J.DC169 G-C WC 19-XIX cWW cW-W 30 I.DA30 J.DT168 A-T WC 20-XX cWW cW-W 31 I.DG31 J.DC167 G-C WC 19-XIX cWW cW-W 32 I.DA32 J.DT166 A-T WC 20-XX cWW cW-W 33 I.DA33 J.DT165 A-T WC 20-XX cWW cW-W 34 I.DT34 J.DA164 T-A WC 20-XX cWW cW-W 35 I.DC35 J.DG163 C-G WC 19-XIX cWW cW-W 36 I.DC36 J.DG162 C-G WC 19-XIX cWW cW-W 37 I.DC37 J.DG161 C-G WC 19-XIX cWW cW-W 38 I.DG38 J.DC160 G-C WC 19-XIX cWW cW-W 39 I.DG39 J.DC159 G-C WC 19-XIX cWW cW-W 40 I.DT40 J.DA158 T-A WC 20-XX cWW cW-W 41 I.DG41 J.DC157 G-C WC 19-XIX cWW cW-W 42 I.DC42 J.DG156 C-G WC 19-XIX cWW cW-W 43 I.DC43 J.DG155 C-G WC 19-XIX cWW cW-W 44 I.DG44 J.DC154 G-C WC 19-XIX cWW cW-W 45 I.DA45 J.DT153 A-T WC 20-XX cWW cW-W 46 I.DG46 J.DC152 G-C WC 19-XIX cWW cW-W 47 I.DG47 J.DC151 G-C WC 19-XIX cWW cW-W 48 I.DC48 J.DG150 C-G WC 19-XIX cWW cW-W 49 I.DC49 J.DG149 C-G WC 19-XIX cWW cW-W 50 I.DG50 J.DC148 G-C WC 19-XIX cWW cW-W 51 I.DC51 J.DG147 C-G WC 19-XIX cWW cW-W 52 I.DT52 J.DA146 T-A WC 20-XX cWW cW-W 53 I.DC53 J.DG145 C-G WC 19-XIX cWW cW-W 54 I.DA54 J.DT144 A-T WC 20-XX cWW cW-W 55 I.DA55 J.DT143 A-T WC 20-XX cWW cW-W 56 I.DT56 J.DA142 T-A WC 20-XX cWW cW-W 57 I.DT57 J.DA141 T-A WC 20-XX cWW cW-W 58 I.DG58 J.DC140 G-C WC 19-XIX cWW cW-W 59 I.DG59 J.DC139 G-C WC 19-XIX cWW cW-W 60 I.DT60 J.DA138 T-A WC 20-XX cWW cW-W 61 I.DC61 J.DG137 C-G WC 19-XIX cWW cW-W 62 I.DG62 J.DC136 G-C WC 19-XIX cWW cW-W 63 I.DT63 J.DA135 T-A WC 20-XX cWW cW-W 64 I.DA64 J.DT134 A-T WC 20-XX cWW cW-W 65 I.DG65 J.DC133 G-C WC 19-XIX cWW cW-W 66 I.DA66 J.DT132 A-T WC 20-XX cWW cW-W 67 I.DC67 J.DG131 C-G WC 19-XIX cWW cW-W 68 I.DA68 J.DT130 A-T WC 20-XX cWW cW-W 69 I.DG69 J.DC129 G-C WC 19-XIX cWW cW-W 70 I.DC70 J.DG128 C-G WC 19-XIX cWW cW-W 71 I.DT71 J.DA127 T-A WC 20-XX cWW cW-W 72 I.DC72 J.DG126 C-G WC 19-XIX cWW cW-W 73 I.DT73 J.DA125 T-A WC 20-XX cWW cW-W 74 I.DA74 J.DT124 A-T WC 20-XX cWW cW-W 75 I.DG75 J.DC123 G-C WC 19-XIX cWW cW-W 76 I.DC76 J.DG122 C-G WC 19-XIX cWW cW-W 77 I.DA77 J.DT121 A-T WC 20-XX cWW cW-W 78 I.DC78 J.DG120 C-G WC 19-XIX cWW cW-W 79 I.DC79 J.DG119 C-G WC 19-XIX cWW cW-W 80 I.DG80 J.DC118 G-C WC 19-XIX cWW cW-W 81 I.DC81 J.DG117 C-G WC 19-XIX cWW cW-W 82 I.DT82 J.DA116 T-A WC 20-XX cWW cW-W 83 I.DT83 J.DA115 T-A WC 20-XX cWW cW-W 84 I.DA84 J.DT114 A-T WC 20-XX cWW cW-W 85 I.DA85 J.DT113 A-T WC 20-XX cWW cW-W 86 I.DA86 J.DT112 A-T WC 20-XX cWW cW-W 87 I.DC87 J.DG111 C-G WC 19-XIX cWW cW-W 88 I.DG88 J.DC110 G-C WC 19-XIX cWW cW-W 89 I.DC89 J.DG109 C-G WC 19-XIX cWW cW-W 90 I.DA90 J.DT108 A-T WC 20-XX cWW cW-W 91 I.DC91 J.DG107 C-G WC 19-XIX cWW cW-W 92 I.DG92 J.DC106 G-C WC 19-XIX cWW cW-W 93 I.DT93 J.DA105 T-A WC 20-XX cWW cW-W 94 I.DA94 J.DT104 A-T WC 20-XX cWW cW-W 95 I.DC95 J.DG103 C-G WC 19-XIX cWW cW-W 96 I.DG96 J.DC102 G-C WC 19-XIX cWW cW-W 97 I.DC97 J.DG101 C-G WC 19-XIX cWW cW-W 98 I.DG98 J.DC100 G-C WC 19-XIX cWW cW-W 99 I.DC99 J.DG99 C-G WC 19-XIX cWW cW-W 100 I.DT100 J.DA98 T-A WC 20-XX cWW cW-W 101 I.DG101 J.DC97 G-C WC 19-XIX cWW cW-W 102 I.DT102 J.DA96 T-A WC 20-XX cWW cW-W 103 I.DC103 J.DG95 C-G WC 19-XIX cWW cW-W 104 I.DC104 J.DG94 C-G WC 19-XIX cWW cW-W 105 I.DC105 J.DG93 C-G WC 19-XIX cWW cW-W 106 I.DC106 J.DG92 C-G WC 19-XIX cWW cW-W 107 I.DC107 J.DG91 C-G WC 19-XIX cWW cW-W 108 I.DG108 J.DC90 G-C WC 19-XIX cWW cW-W 109 I.DC109 J.DG89 C-G WC 19-XIX cWW cW-W 110 I.DG110 J.DC88 G-C WC 19-XIX cWW cW-W 111 I.DT111 J.DA87 T-A WC 20-XX cWW cW-W 112 I.DT112 J.DA86 T-A WC 20-XX cWW cW-W 113 I.DT113 J.DA85 T-A WC 20-XX cWW cW-W 114 I.DT114 J.DA84 T-A WC 20-XX cWW cW-W 115 I.DA115 J.DT83 A-T WC 20-XX cWW cW-W 116 I.DA116 J.DT82 A-T WC 20-XX cWW cW-W 117 I.DC117 J.DG81 C-G WC 19-XIX cWW cW-W 118 I.DC118 J.DG80 C-G WC 19-XIX cWW cW-W 119 I.DG119 J.DC79 G-C WC 19-XIX cWW cW-W 120 I.DC120 J.DG78 C-G WC 19-XIX cWW cW-W 121 I.DC121 J.DG77 C-G WC 19-XIX cWW cW-W 122 I.DA122 J.DT76 A-T WC 20-XX cWW cW-W 123 I.DA123 J.DT75 A-T WC 20-XX cWW cW-W 124 I.DG124 J.DC74 G-C WC 19-XIX cWW cW-W 125 I.DG125 J.DC73 G-C WC 19-XIX cWW cW-W 126 I.DG126 J.DC72 G-C WC 19-XIX cWW cW-W 127 I.DG127 J.DC71 G-C WC 19-XIX cWW cW-W 128 I.DA128 J.DT70 A-T WC 20-XX cWW cW-W 129 I.DT129 J.DA69 T-A WC 20-XX cWW cW-W 130 I.DT130 J.DA68 T-A WC 20-XX cWW cW-W 131 I.DA131 J.DT67 A-T WC 20-XX cWW cW-W 132 I.DC132 J.DG66 C-G WC 19-XIX cWW cW-W 133 I.DT133 J.DA65 T-A WC 20-XX cWW cW-W 134 I.DC134 J.DG64 C-G WC 19-XIX cWW cW-W 135 I.DC135 J.DG63 C-G WC 19-XIX cWW cW-W 136 I.DC136 J.DG62 C-G WC 19-XIX cWW cW-W 137 I.DT137 J.DA61 T-A WC 20-XX cWW cW-W 138 I.DA138 J.DT60 A-T WC 20-XX cWW cW-W 139 I.DG139 J.DC59 G-C WC 19-XIX cWW cW-W 140 I.DT140 J.DA58 T-A WC 20-XX cWW cW-W 141 I.DC141 J.DG57 C-G WC 19-XIX cWW cW-W 142 I.DT142 J.DA56 T-A WC 20-XX cWW cW-W 143 I.DC143 J.DG55 C-G WC 19-XIX cWW cW-W 144 I.DC144 J.DG54 C-G WC 19-XIX cWW cW-W 145 I.DA145 J.DT53 A-T WC 20-XX cWW cW-W 146 I.DG146 J.DC52 G-C WC 19-XIX cWW cW-W 147 I.DG147 J.DC51 G-C WC 19-XIX cWW cW-W 148 I.DC148 J.DG50 C-G WC 19-XIX cWW cW-W 149 I.DA149 J.DT49 A-T WC 20-XX cWW cW-W 150 I.DC150 J.DG48 C-G WC 19-XIX cWW cW-W 151 I.DG151 J.DC47 G-C WC 19-XIX cWW cW-W 152 I.DT152 J.DA46 T-A WC 20-XX cWW cW-W 153 I.DG153 J.DC45 G-C WC 19-XIX cWW cW-W 154 I.DT154 J.DA44 T-A WC 20-XX cWW cW-W 155 I.DC155 J.DG43 C-G WC 19-XIX cWW cW-W 156 I.DA156 J.DT42 A-T WC 20-XX cWW cW-W 157 I.DG157 J.DC41 G-C WC 19-XIX cWW cW-W 158 I.DA158 J.DT40 A-T WC 20-XX cWW cW-W 159 I.DT159 J.DA39 T-A WC 20-XX cWW cW-W 160 I.DA160 J.DT38 A-T WC 20-XX cWW cW-W 161 I.DT161 J.DA37 T-A WC 20-XX cWW cW-W 162 I.DA162 J.DT36 A-T WC 20-XX cWW cW-W 163 I.DT163 J.DA35 T-A WC 20-XX cWW cW-W 164 I.DA164 J.DT34 A-T WC 20-XX cWW cW-W 165 I.DC165 J.DG33 C-G WC 19-XIX cWW cW-W 166 I.DA166 J.DT32 A-T WC 20-XX cWW cW-W 167 I.DT167 J.DA31 T-A WC 20-XX cWW cW-W 168 I.DC168 J.DG30 C-G WC 19-XIX cWW cW-W 169 I.DC169 J.DG29 C-G WC 19-XIX cWW cW-W 170 I.DT170 J.DA28 T-A WC 20-XX cWW cW-W 171 I.DG171 J.DC27 G-C WC 19-XIX cWW cW-W 172 I.DT172 J.DA26 T-A WC 20-XX cWW cW-W 173 I.DG173 J.DC25 G-C WC 19-XIX cWW cW-W 174 I.DC174 J.DG24 C-G WC 19-XIX cWW cW-W 175 I.DA175 J.DT23 A-T WC 20-XX cWW cW-W 176 I.DT176 J.DA22 T-A WC 20-XX cWW cW-W 177 I.DG177 J.DC21 G-C WC 19-XIX cWW cW-W 178 I.DT178 J.DA20 T-A WC 20-XX cWW cW-W 179 I.DA179 J.DT19 A-T WC 20-XX cWW cW-W 180 I.DT180 J.DA18 T-A WC 20-XX cWW cW-W 181 I.DT181 J.DA17 T-A WC 20-XX cWW cW-W 182 I.DG182 J.DC16 G-C WC 19-XIX cWW cW-W 183 I.DA183 J.DT15 A-T WC 20-XX cWW cW-W 184 I.DA184 J.DT14 A-T WC 20-XX cWW cW-W 185 I.DC185 J.DG13 C-G WC 19-XIX cWW cW-W 186 I.DA186 J.DT12 A-T WC 20-XX cWW cW-W 187 I.DG187 J.DC11 G-C WC 19-XIX cWW cW-W 188 I.DC188 J.DG10 C-G WC 19-XIX cWW cW-W 189 I.DG189 J.DC9 G-C WC 19-XIX cWW cW-W 190 I.DA190 J.DT8 A-T WC 20-XX cWW cW-W 191 I.DC191 J.DG7 C-G WC 19-XIX cWW cW-W 192 I.DC192 J.DG6 C-G WC 19-XIX cWW cW-W 193 I.DA193 J.DT5 A-T WC 20-XX cWW cW-W 194 I.DC194 J.DG4 C-G WC 19-XIX cWW cW-W 195 I.DC195 J.DG3 C-G WC 19-XIX cWW cW-W 196 I.DC196 J.DG2 C-G WC 19-XIX cWW cW-W 197 I.DC197 J.DG1 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 1 stem Note: a stem is defined as a helix consisting of only canonical WC/wobble pairs, with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=197 strand-1 5'-GGGCTGGACCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGACCACCCC-3' bp-type ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-CCCGACCTGGGATATGCGCCGGCGGGACCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATCAGAGGTCCGTGCACAGTCTATATATGTAGGACACGTACATAACTTGTCGCTGGTGGGG-5' helix-form B...BBBBBBB....BBBBBBBBBBBBBBBBBBBB.BBBBB..BB.BBBBBB.B.BBBBBBB.BB.BBBBBBBBBBBBBBBBBBBBBBBBBB.BBBBBBBBBBBBBBBBBBBB..BBBB.BBBBBB..BBBBBBBBB..BBBB..BBBBBBBBB.BB.BBBBBBBBBBBBBBBB.....B.B....BBBBB....B 1 I.DG1 J.DC197 G-C WC 19-XIX cWW cW-W 2 I.DG2 J.DC196 G-C WC 19-XIX cWW cW-W 3 I.DG3 J.DC195 G-C WC 19-XIX cWW cW-W 4 I.DC4 J.DG194 C-G WC 19-XIX cWW cW-W 5 I.DT5 J.DA193 T-A WC 20-XX cWW cW-W 6 I.DG6 J.DC192 G-C WC 19-XIX cWW cW-W 7 I.DG7 J.DC191 G-C WC 19-XIX cWW cW-W 8 I.DA8 J.DT190 A-T WC 20-XX cWW cW-W 9 I.DC9 J.DG189 C-G WC 19-XIX cWW cW-W 10 I.DC10 J.DG188 C-G WC 19-XIX cWW cW-W 11 I.DC11 J.DG187 C-G WC 19-XIX cWW cW-W 12 I.DT12 J.DA186 T-A WC 20-XX cWW cW-W 13 I.DA13 J.DT185 A-T WC 20-XX cWW cW-W 14 I.DT14 J.DA184 T-A WC 20-XX cWW cW-W 15 I.DA15 J.DT183 A-T WC 20-XX cWW cW-W 16 I.DC16 J.DG182 C-G WC 19-XIX cWW cW-W 17 I.DG17 J.DC181 G-C WC 19-XIX cWW cW-W 18 I.DC18 J.DG180 C-G WC 19-XIX cWW cW-W 19 I.DG19 J.DC179 G-C WC 19-XIX cWW cW-W 20 I.DG20 J.DC178 G-C WC 19-XIX cWW cW-W 21 I.DC21 J.DG177 C-G WC 19-XIX cWW cW-W 22 I.DC22 J.DG176 C-G WC 19-XIX cWW cW-W 23 I.DG23 J.DC175 G-C WC 19-XIX cWW cW-W 24 I.DC24 J.DG174 C-G WC 19-XIX cWW cW-W 25 I.DC25 J.DG173 C-G WC 19-XIX cWW cW-W 26 I.DC26 J.DG172 C-G WC 19-XIX cWW cW-W 27 I.DT27 J.DA171 T-A WC 20-XX cWW cW-W 28 I.DG28 J.DC170 G-C WC 19-XIX cWW cW-W 29 I.DG29 J.DC169 G-C WC 19-XIX cWW cW-W 30 I.DA30 J.DT168 A-T WC 20-XX cWW cW-W 31 I.DG31 J.DC167 G-C WC 19-XIX cWW cW-W 32 I.DA32 J.DT166 A-T WC 20-XX cWW cW-W 33 I.DA33 J.DT165 A-T WC 20-XX cWW cW-W 34 I.DT34 J.DA164 T-A WC 20-XX cWW cW-W 35 I.DC35 J.DG163 C-G WC 19-XIX cWW cW-W 36 I.DC36 J.DG162 C-G WC 19-XIX cWW cW-W 37 I.DC37 J.DG161 C-G WC 19-XIX cWW cW-W 38 I.DG38 J.DC160 G-C WC 19-XIX cWW cW-W 39 I.DG39 J.DC159 G-C WC 19-XIX cWW cW-W 40 I.DT40 J.DA158 T-A WC 20-XX cWW cW-W 41 I.DG41 J.DC157 G-C WC 19-XIX cWW cW-W 42 I.DC42 J.DG156 C-G WC 19-XIX cWW cW-W 43 I.DC43 J.DG155 C-G WC 19-XIX cWW cW-W 44 I.DG44 J.DC154 G-C WC 19-XIX cWW cW-W 45 I.DA45 J.DT153 A-T WC 20-XX cWW cW-W 46 I.DG46 J.DC152 G-C WC 19-XIX cWW cW-W 47 I.DG47 J.DC151 G-C WC 19-XIX cWW cW-W 48 I.DC48 J.DG150 C-G WC 19-XIX cWW cW-W 49 I.DC49 J.DG149 C-G WC 19-XIX cWW cW-W 50 I.DG50 J.DC148 G-C WC 19-XIX cWW cW-W 51 I.DC51 J.DG147 C-G WC 19-XIX cWW cW-W 52 I.DT52 J.DA146 T-A WC 20-XX cWW cW-W 53 I.DC53 J.DG145 C-G WC 19-XIX cWW cW-W 54 I.DA54 J.DT144 A-T WC 20-XX cWW cW-W 55 I.DA55 J.DT143 A-T WC 20-XX cWW cW-W 56 I.DT56 J.DA142 T-A WC 20-XX cWW cW-W 57 I.DT57 J.DA141 T-A WC 20-XX cWW cW-W 58 I.DG58 J.DC140 G-C WC 19-XIX cWW cW-W 59 I.DG59 J.DC139 G-C WC 19-XIX cWW cW-W 60 I.DT60 J.DA138 T-A WC 20-XX cWW cW-W 61 I.DC61 J.DG137 C-G WC 19-XIX cWW cW-W 62 I.DG62 J.DC136 G-C WC 19-XIX cWW cW-W 63 I.DT63 J.DA135 T-A WC 20-XX cWW cW-W 64 I.DA64 J.DT134 A-T WC 20-XX cWW cW-W 65 I.DG65 J.DC133 G-C WC 19-XIX cWW cW-W 66 I.DA66 J.DT132 A-T WC 20-XX cWW cW-W 67 I.DC67 J.DG131 C-G WC 19-XIX cWW cW-W 68 I.DA68 J.DT130 A-T WC 20-XX cWW cW-W 69 I.DG69 J.DC129 G-C WC 19-XIX cWW cW-W 70 I.DC70 J.DG128 C-G WC 19-XIX cWW cW-W 71 I.DT71 J.DA127 T-A WC 20-XX cWW cW-W 72 I.DC72 J.DG126 C-G WC 19-XIX cWW cW-W 73 I.DT73 J.DA125 T-A WC 20-XX cWW cW-W 74 I.DA74 J.DT124 A-T WC 20-XX cWW cW-W 75 I.DG75 J.DC123 G-C WC 19-XIX cWW cW-W 76 I.DC76 J.DG122 C-G WC 19-XIX cWW cW-W 77 I.DA77 J.DT121 A-T WC 20-XX cWW cW-W 78 I.DC78 J.DG120 C-G WC 19-XIX cWW cW-W 79 I.DC79 J.DG119 C-G WC 19-XIX cWW cW-W 80 I.DG80 J.DC118 G-C WC 19-XIX cWW cW-W 81 I.DC81 J.DG117 C-G WC 19-XIX cWW cW-W 82 I.DT82 J.DA116 T-A WC 20-XX cWW cW-W 83 I.DT83 J.DA115 T-A WC 20-XX cWW cW-W 84 I.DA84 J.DT114 A-T WC 20-XX cWW cW-W 85 I.DA85 J.DT113 A-T WC 20-XX cWW cW-W 86 I.DA86 J.DT112 A-T WC 20-XX cWW cW-W 87 I.DC87 J.DG111 C-G WC 19-XIX cWW cW-W 88 I.DG88 J.DC110 G-C WC 19-XIX cWW cW-W 89 I.DC89 J.DG109 C-G WC 19-XIX cWW cW-W 90 I.DA90 J.DT108 A-T WC 20-XX cWW cW-W 91 I.DC91 J.DG107 C-G WC 19-XIX cWW cW-W 92 I.DG92 J.DC106 G-C WC 19-XIX cWW cW-W 93 I.DT93 J.DA105 T-A WC 20-XX cWW cW-W 94 I.DA94 J.DT104 A-T WC 20-XX cWW cW-W 95 I.DC95 J.DG103 C-G WC 19-XIX cWW cW-W 96 I.DG96 J.DC102 G-C WC 19-XIX cWW cW-W 97 I.DC97 J.DG101 C-G WC 19-XIX cWW cW-W 98 I.DG98 J.DC100 G-C WC 19-XIX cWW cW-W 99 I.DC99 J.DG99 C-G WC 19-XIX cWW cW-W 100 I.DT100 J.DA98 T-A WC 20-XX cWW cW-W 101 I.DG101 J.DC97 G-C WC 19-XIX cWW cW-W 102 I.DT102 J.DA96 T-A WC 20-XX cWW cW-W 103 I.DC103 J.DG95 C-G WC 19-XIX cWW cW-W 104 I.DC104 J.DG94 C-G WC 19-XIX cWW cW-W 105 I.DC105 J.DG93 C-G WC 19-XIX cWW cW-W 106 I.DC106 J.DG92 C-G WC 19-XIX cWW cW-W 107 I.DC107 J.DG91 C-G WC 19-XIX cWW cW-W 108 I.DG108 J.DC90 G-C WC 19-XIX cWW cW-W 109 I.DC109 J.DG89 C-G WC 19-XIX cWW cW-W 110 I.DG110 J.DC88 G-C WC 19-XIX cWW cW-W 111 I.DT111 J.DA87 T-A WC 20-XX cWW cW-W 112 I.DT112 J.DA86 T-A WC 20-XX cWW cW-W 113 I.DT113 J.DA85 T-A WC 20-XX cWW cW-W 114 I.DT114 J.DA84 T-A WC 20-XX cWW cW-W 115 I.DA115 J.DT83 A-T WC 20-XX cWW cW-W 116 I.DA116 J.DT82 A-T WC 20-XX cWW cW-W 117 I.DC117 J.DG81 C-G WC 19-XIX cWW cW-W 118 I.DC118 J.DG80 C-G WC 19-XIX cWW cW-W 119 I.DG119 J.DC79 G-C WC 19-XIX cWW cW-W 120 I.DC120 J.DG78 C-G WC 19-XIX cWW cW-W 121 I.DC121 J.DG77 C-G WC 19-XIX cWW cW-W 122 I.DA122 J.DT76 A-T WC 20-XX cWW cW-W 123 I.DA123 J.DT75 A-T WC 20-XX cWW cW-W 124 I.DG124 J.DC74 G-C WC 19-XIX cWW cW-W 125 I.DG125 J.DC73 G-C WC 19-XIX cWW cW-W 126 I.DG126 J.DC72 G-C WC 19-XIX cWW cW-W 127 I.DG127 J.DC71 G-C WC 19-XIX cWW cW-W 128 I.DA128 J.DT70 A-T WC 20-XX cWW cW-W 129 I.DT129 J.DA69 T-A WC 20-XX cWW cW-W 130 I.DT130 J.DA68 T-A WC 20-XX cWW cW-W 131 I.DA131 J.DT67 A-T WC 20-XX cWW cW-W 132 I.DC132 J.DG66 C-G WC 19-XIX cWW cW-W 133 I.DT133 J.DA65 T-A WC 20-XX cWW cW-W 134 I.DC134 J.DG64 C-G WC 19-XIX cWW cW-W 135 I.DC135 J.DG63 C-G WC 19-XIX cWW cW-W 136 I.DC136 J.DG62 C-G WC 19-XIX cWW cW-W 137 I.DT137 J.DA61 T-A WC 20-XX cWW cW-W 138 I.DA138 J.DT60 A-T WC 20-XX cWW cW-W 139 I.DG139 J.DC59 G-C WC 19-XIX cWW cW-W 140 I.DT140 J.DA58 T-A WC 20-XX cWW cW-W 141 I.DC141 J.DG57 C-G WC 19-XIX cWW cW-W 142 I.DT142 J.DA56 T-A WC 20-XX cWW cW-W 143 I.DC143 J.DG55 C-G WC 19-XIX cWW cW-W 144 I.DC144 J.DG54 C-G WC 19-XIX cWW cW-W 145 I.DA145 J.DT53 A-T WC 20-XX cWW cW-W 146 I.DG146 J.DC52 G-C WC 19-XIX cWW cW-W 147 I.DG147 J.DC51 G-C WC 19-XIX cWW cW-W 148 I.DC148 J.DG50 C-G WC 19-XIX cWW cW-W 149 I.DA149 J.DT49 A-T WC 20-XX cWW cW-W 150 I.DC150 J.DG48 C-G WC 19-XIX cWW cW-W 151 I.DG151 J.DC47 G-C WC 19-XIX cWW cW-W 152 I.DT152 J.DA46 T-A WC 20-XX cWW cW-W 153 I.DG153 J.DC45 G-C WC 19-XIX cWW cW-W 154 I.DT154 J.DA44 T-A WC 20-XX cWW cW-W 155 I.DC155 J.DG43 C-G WC 19-XIX cWW cW-W 156 I.DA156 J.DT42 A-T WC 20-XX cWW cW-W 157 I.DG157 J.DC41 G-C WC 19-XIX cWW cW-W 158 I.DA158 J.DT40 A-T WC 20-XX cWW cW-W 159 I.DT159 J.DA39 T-A WC 20-XX cWW cW-W 160 I.DA160 J.DT38 A-T WC 20-XX cWW cW-W 161 I.DT161 J.DA37 T-A WC 20-XX cWW cW-W 162 I.DA162 J.DT36 A-T WC 20-XX cWW cW-W 163 I.DT163 J.DA35 T-A WC 20-XX cWW cW-W 164 I.DA164 J.DT34 A-T WC 20-XX cWW cW-W 165 I.DC165 J.DG33 C-G WC 19-XIX cWW cW-W 166 I.DA166 J.DT32 A-T WC 20-XX cWW cW-W 167 I.DT167 J.DA31 T-A WC 20-XX cWW cW-W 168 I.DC168 J.DG30 C-G WC 19-XIX cWW cW-W 169 I.DC169 J.DG29 C-G WC 19-XIX cWW cW-W 170 I.DT170 J.DA28 T-A WC 20-XX cWW cW-W 171 I.DG171 J.DC27 G-C WC 19-XIX cWW cW-W 172 I.DT172 J.DA26 T-A WC 20-XX cWW cW-W 173 I.DG173 J.DC25 G-C WC 19-XIX cWW cW-W 174 I.DC174 J.DG24 C-G WC 19-XIX cWW cW-W 175 I.DA175 J.DT23 A-T WC 20-XX cWW cW-W 176 I.DT176 J.DA22 T-A WC 20-XX cWW cW-W 177 I.DG177 J.DC21 G-C WC 19-XIX cWW cW-W 178 I.DT178 J.DA20 T-A WC 20-XX cWW cW-W 179 I.DA179 J.DT19 A-T WC 20-XX cWW cW-W 180 I.DT180 J.DA18 T-A WC 20-XX cWW cW-W 181 I.DT181 J.DA17 T-A WC 20-XX cWW cW-W 182 I.DG182 J.DC16 G-C WC 19-XIX cWW cW-W 183 I.DA183 J.DT15 A-T WC 20-XX cWW cW-W 184 I.DA184 J.DT14 A-T WC 20-XX cWW cW-W 185 I.DC185 J.DG13 C-G WC 19-XIX cWW cW-W 186 I.DA186 J.DT12 A-T WC 20-XX cWW cW-W 187 I.DG187 J.DC11 G-C WC 19-XIX cWW cW-W 188 I.DC188 J.DG10 C-G WC 19-XIX cWW cW-W 189 I.DG189 J.DC9 G-C WC 19-XIX cWW cW-W 190 I.DA190 J.DT8 A-T WC 20-XX cWW cW-W 191 I.DC191 J.DG7 C-G WC 19-XIX cWW cW-W 192 I.DC192 J.DG6 C-G WC 19-XIX cWW cW-W 193 I.DA193 J.DT5 A-T WC 20-XX cWW cW-W 194 I.DC194 J.DG4 C-G WC 19-XIX cWW cW-W 195 I.DC195 J.DG3 C-G WC 19-XIX cWW cW-W 196 I.DC196 J.DG2 C-G WC 19-XIX cWW cW-W 197 I.DC197 J.DG1 C-G WC 19-XIX cWW cW-W **************************************************************************** Nucleotides not involved in stacking interactions nts=1 G I.DG1 **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >7k63 nts=394 [whole] GGGCTGGACCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGACCACCCC&GGGGTGGTCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCGCGTATAGGGTCCAGCCC (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((&))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))) >7k63-I #1 nts=197 0.16(2.38) [chain] DNA GGGCTGGACCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGACCACCCC ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((( >7k63-J #2 nts=197 0.15(2.39) [chain] DNA GGGGTGGTCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCGCGTATAGGGTCCAGCCC ))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))) **************************************************************************** Summary of structural features of 394 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 G ( I.DG1 0.003 anti,~C2'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end 2 G ( I.DG2 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 3 G ( I.DG3 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 4 C ( I.DC4 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 5 T ( I.DT5 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 6 G ( I.DG6 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 7 G ( I.DG7 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 8 A ( I.DA8 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 9 C ( I.DC9 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 10 C ( I.DC10 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 11 C ( I.DC11 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 12 T ( I.DT12 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 13 A ( I.DA13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 14 T ( I.DT14 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 15 A ( I.DA15 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 16 C ( I.DC16 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 17 G ( I.DG17 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 18 C ( I.DC18 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 19 G ( I.DG19 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 20 G ( I.DG20 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 21 C ( I.DC21 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 22 C ( I.DC22 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 23 G ( I.DG23 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 24 C ( I.DC24 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 25 C ( I.DC25 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 26 C ( I.DC26 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 27 T ( I.DT27 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 28 G ( I.DG28 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 29 G ( I.DG29 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 30 A ( I.DA30 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 31 G ( I.DG31 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 32 A ( I.DA32 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 33 A ( I.DA33 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 34 T ( I.DT34 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 35 C ( I.DC35 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 36 C ( I.DC36 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 37 C ( I.DC37 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 38 G ( I.DG38 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 39 G ( I.DG39 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 40 T ( I.DT40 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 41 G ( I.DG41 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 42 C ( I.DC42 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 43 C ( I.DC43 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 44 G ( I.DG44 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 45 A ( I.DA45 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 46 G ( I.DG46 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 47 G ( I.DG47 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 48 C ( I.DC48 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 49 C ( I.DC49 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 50 G ( I.DG50 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 51 C ( I.DC51 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 52 T ( I.DT52 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 53 C ( I.DC53 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 54 A ( I.DA54 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 55 A ( I.DA55 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 56 T ( I.DT56 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 57 T ( I.DT57 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 58 G ( I.DG58 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 59 G ( I.DG59 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 60 T ( I.DT60 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 61 C ( I.DC61 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 62 G ( I.DG62 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 63 T ( I.DT63 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 64 A ( I.DA64 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 65 G ( I.DG65 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 66 A ( I.DA66 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 67 C ( I.DC67 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 68 A ( I.DA68 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 69 G ( I.DG69 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 70 C ( I.DC70 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 71 T ( I.DT71 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 72 C ( I.DC72 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 73 T ( I.DT73 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 74 A ( I.DA74 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 75 G ( I.DG75 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 76 C ( I.DC76 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 77 A ( I.DA77 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 78 C ( I.DC78 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 79 C ( I.DC79 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 80 G ( I.DG80 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 81 C ( I.DC81 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 82 T ( I.DT82 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 83 T ( I.DT83 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 84 A ( I.DA84 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 85 A ( I.DA85 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 86 A ( I.DA86 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 87 C ( I.DC87 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 88 G ( I.DG88 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 89 C ( I.DC89 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 90 A ( I.DA90 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 91 C ( I.DC91 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 92 G ( I.DG92 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 93 T ( I.DT93 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 94 A ( I.DA94 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 95 C ( I.DC95 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 96 G ( I.DG96 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 97 C ( I.DC97 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 98 G ( I.DG98 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 99 C ( I.DC99 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 100 T ( I.DT100 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 101 G ( I.DG101 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 102 T ( I.DT102 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 103 C ( I.DC103 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 104 C ( I.DC104 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 105 C ( I.DC105 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 106 C ( I.DC106 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 107 C ( I.DC107 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 108 G ( I.DG108 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 109 C ( I.DC109 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 110 G ( I.DG110 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 111 T ( I.DT111 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 112 T ( I.DT112 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 113 T ( I.DT113 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 114 T ( I.DT114 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 115 A ( I.DA115 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 116 A ( I.DA116 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 117 C ( I.DC117 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 118 C ( I.DC118 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 119 G ( I.DG119 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 120 C ( I.DC120 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 121 C ( I.DC121 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 122 A ( I.DA122 0.005 anti,BI,canonical,non-pair-contact,helix,stem 123 A ( I.DA123 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 124 G ( I.DG124 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 125 G ( I.DG125 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 126 G ( I.DG126 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 127 G ( I.DG127 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 128 A ( I.DA128 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 129 T ( I.DT129 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 130 T ( I.DT130 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 131 A ( I.DA131 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 132 C ( I.DC132 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 133 T ( I.DT133 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 134 C ( I.DC134 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 135 C ( I.DC135 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 136 C ( I.DC136 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 137 T ( I.DT137 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 138 A ( I.DA138 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 139 G ( I.DG139 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 140 T ( I.DT140 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 141 C ( I.DC141 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 142 T ( I.DT142 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 143 C ( I.DC143 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 144 C ( I.DC144 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 145 A ( I.DA145 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 146 G ( I.DG146 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 147 G ( I.DG147 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 148 C ( I.DC148 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 149 A ( I.DA149 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 150 C ( I.DC150 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 151 G ( I.DG151 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 152 T ( I.DT152 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 153 G ( I.DG153 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 154 T ( I.DT154 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 155 C ( I.DC155 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 156 A ( I.DA156 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 157 G ( I.DG157 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 158 A ( I.DA158 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 159 T ( I.DT159 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 160 A ( I.DA160 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 161 T ( I.DT161 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 162 A ( I.DA162 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 163 T ( I.DT163 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 164 A ( I.DA164 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 165 C ( I.DC165 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 166 A ( I.DA166 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 167 T ( I.DT167 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 168 C ( I.DC168 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 169 C ( I.DC169 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 170 T ( I.DT170 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 171 G ( I.DG171 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 172 T ( I.DT172 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 173 G ( I.DG173 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 174 C ( I.DC174 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 175 A ( I.DA175 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 176 T ( I.DT176 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 177 G ( I.DG177 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 178 T ( I.DT178 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 179 A ( I.DA179 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 180 T ( I.DT180 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 181 T ( I.DT181 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 182 G ( I.DG182 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 183 A ( I.DA183 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 184 A ( I.DA184 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 185 C ( I.DC185 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 186 A ( I.DA186 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 187 G ( I.DG187 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 188 C ( I.DC188 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 189 G ( I.DG189 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 190 A ( I.DA190 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 191 C ( I.DC191 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 192 C ( I.DC192 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 193 A ( I.DA193 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 194 C ( I.DC194 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 195 C ( I.DC195 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 196 C ( I.DC196 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 197 C ( I.DC197 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 198 G ) J.DG1 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 199 G ) J.DG2 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 200 G ) J.DG3 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 201 G ) J.DG4 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 202 T ) J.DT5 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 203 G ) J.DG6 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 204 G ) J.DG7 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 205 T ) J.DT8 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 206 C ) J.DC9 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 207 G ) J.DG10 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 208 C ) J.DC11 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 209 T ) J.DT12 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 210 G ) J.DG13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 211 T ) J.DT14 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 212 T ) J.DT15 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 213 C ) J.DC16 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 214 A ) J.DA17 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 215 A ) J.DA18 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 216 T ) J.DT19 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 217 A ) J.DA20 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 218 C ) J.DC21 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 219 A ) J.DA22 0.003 anti,BI,canonical,non-pair-contact,helix,stem 220 T ) J.DT23 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 221 G ) J.DG24 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 222 C ) J.DC25 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 223 A ) J.DA26 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 224 C ) J.DC27 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 225 A ) J.DA28 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 226 G ) J.DG29 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 227 G ) J.DG30 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 228 A ) J.DA31 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 229 T ) J.DT32 0.004 anti,BI,canonical,non-pair-contact,helix,stem 230 G ) J.DG33 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 231 T ) J.DT34 0.003 anti,BI,canonical,non-pair-contact,helix,stem 232 A ) J.DA35 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 233 T ) J.DT36 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 234 A ) J.DA37 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 235 T ) J.DT38 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 236 A ) J.DA39 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 237 T ) J.DT40 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 238 C ) J.DC41 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 239 T ) J.DT42 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 240 G ) J.DG43 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 241 A ) J.DA44 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 242 C ) J.DC45 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 243 A ) J.DA46 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 244 C ) J.DC47 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 245 G ) J.DG48 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 246 T ) J.DT49 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 247 G ) J.DG50 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 248 C ) J.DC51 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 249 C ) J.DC52 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 250 T ) J.DT53 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 251 G ) J.DG54 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 252 G ) J.DG55 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 253 A ) J.DA56 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 254 G ) J.DG57 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 255 A ) J.DA58 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 256 C ) J.DC59 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 257 T ) J.DT60 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 258 A ) J.DA61 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 259 G ) J.DG62 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 260 G ) J.DG63 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 261 G ) J.DG64 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 262 A ) J.DA65 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 263 G ) J.DG66 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 264 T ) J.DT67 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 265 A ) J.DA68 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 266 A ) J.DA69 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 267 T ) J.DT70 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 268 C ) J.DC71 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 269 C ) J.DC72 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 270 C ) J.DC73 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 271 C ) J.DC74 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 272 T ) J.DT75 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 273 T ) J.DT76 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 274 G ) J.DG77 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 275 G ) J.DG78 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 276 C ) J.DC79 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 277 G ) J.DG80 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 278 G ) J.DG81 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 279 T ) J.DT82 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 280 T ) J.DT83 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 281 A ) J.DA84 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 282 A ) J.DA85 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 283 A ) J.DA86 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 284 A ) J.DA87 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 285 C ) J.DC88 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 286 G ) J.DG89 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 287 C ) J.DC90 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 288 G ) J.DG91 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 289 G ) J.DG92 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 290 G ) J.DG93 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 291 G ) J.DG94 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 292 G ) J.DG95 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 293 A ) J.DA96 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 294 C ) J.DC97 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 295 A ) J.DA98 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 296 G ) J.DG99 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 297 C ) J.DC100 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 298 G ) J.DG101 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 299 C ) J.DC102 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 300 G ) J.DG103 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 301 T ) J.DT104 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 302 A ) J.DA105 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 303 C ) J.DC106 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 304 G ) J.DG107 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 305 T ) J.DT108 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 306 G ) J.DG109 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 307 C ) J.DC110 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 308 G ) J.DG111 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 309 T ) J.DT112 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 310 T ) J.DT113 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 311 T ) J.DT114 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 312 A ) J.DA115 0.009 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 313 A ) J.DA116 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 314 G ) J.DG117 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 315 C ) J.DC118 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 316 G ) J.DG119 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 317 G ) J.DG120 0.005 anti,BI,canonical,non-pair-contact,helix,stem 318 T ) J.DT121 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 319 G ) J.DG122 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 320 C ) J.DC123 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 321 T ) J.DT124 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 322 A ) J.DA125 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 323 G ) J.DG126 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 324 A ) J.DA127 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 325 G ) J.DG128 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 326 C ) J.DC129 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 327 T ) J.DT130 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 328 G ) J.DG131 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 329 T ) J.DT132 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 330 C ) J.DC133 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 331 T ) J.DT134 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 332 A ) J.DA135 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 333 C ) J.DC136 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 334 G ) J.DG137 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 335 A ) J.DA138 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 336 C ) J.DC139 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 337 C ) J.DC140 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 338 A ) J.DA141 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 339 A ) J.DA142 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 340 T ) J.DT143 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 341 T ) J.DT144 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 342 G ) J.DG145 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 343 A ) J.DA146 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 344 G ) J.DG147 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 345 C ) J.DC148 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 346 G ) J.DG149 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 347 G ) J.DG150 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 348 C ) J.DC151 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 349 C ) J.DC152 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 350 T ) J.DT153 0.003 anti,canonical,non-pair-contact,helix,stem 351 C ) J.DC154 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 352 G ) J.DG155 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 353 G ) J.DG156 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 354 C ) J.DC157 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 355 A ) J.DA158 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 356 C ) J.DC159 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 357 C ) J.DC160 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 358 G ) J.DG161 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 359 G ) J.DG162 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 360 G ) J.DG163 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 361 A ) J.DA164 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 362 T ) J.DT165 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 363 T ) J.DT166 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 364 C ) J.DC167 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 365 T ) J.DT168 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 366 C ) J.DC169 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 367 C ) J.DC170 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 368 A ) J.DA171 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 369 G ) J.DG172 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 370 G ) J.DG173 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 371 G ) J.DG174 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 372 C ) J.DC175 0.002 anti,BI,canonical,non-pair-contact,helix,stem 373 G ) J.DG176 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 374 G ) J.DG177 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 375 C ) J.DC178 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 376 C ) J.DC179 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 377 G ) J.DG180 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 378 C ) J.DC181 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 379 G ) J.DG182 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 380 T ) J.DT183 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 381 A ) J.DA184 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 382 T ) J.DT185 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 383 A ) J.DA186 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 384 G ) J.DG187 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 385 G ) J.DG188 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 386 G ) J.DG189 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 387 T ) J.DT190 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 388 C ) J.DC191 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 389 C ) J.DC192 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 390 A ) J.DA193 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 391 G ) J.DG194 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 392 C ) J.DC195 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 393 C ) J.DC196 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 394 C ) J.DC197 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end **************************************************************************** List of 7 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-stems.pdb -- an ensemble of stems 3 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 4 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 5 dssr-2ndstrs.ct -- secondary structure in connectivity table format 6 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 7 dssr-torsions.txt -- backbone torsion angles and suite names