**************************************************************************** Note: By default, each nucleotide is identified by chainId.name#. So a common case would be B.A1689, meaning adenosine #1689 on chain B. One-letter base names for modified nucleotides are put in lower case (e.g., 'c' for 5MC). For further information about the output notation, please refer to the DSSR User Manual. Questions and suggestions are *always* welcome on the 3DNA Forum. Command: x3dna-dssr -i=6gc6.pdb -o=6gc6.out File name: 6gc6.pdb no. of DNA/RNA chains: 1 [A=2092] no. of nucleotides: 2092 no. of atoms: 61404 no. of waters: 0 no. of metals: 0 **************************************************************************** List of 944 base pairs nt1 nt2 bp name Saenger LW DSSR 1 A.G1 A.C2902 G-C WC 19-XIX cWW cW-W 2 A.G2 A.C2901 G-C WC 19-XIX cWW cW-W 3 A.U3 A.A2900 U-A WC 20-XX cWW cW-W 4 A.U4 A.A2899 U-A WC 20-XX cWW cW-W 5 A.A5 A.U2898 A-U WC 20-XX cWW cW-W 6 A.A6 A.U2897 A-U WC 20-XX cWW cW-W 7 A.G7 A.C2896 G-C WC 19-XIX cWW cW-W 8 A.C8 A.G2895 C-G WC 19-XIX cWW cW-W 9 A.G9 A.A10 G+A Platform -- cSH cm+M 10 A.A10 A.U2629 A-U rHoogsteen 24-XXIV tHW tM-W 11 A.C11 A.U2629 C-U -- -- tHW tM-W 12 A.U12 A.A526 U-A rHoogsteen 24-XXIV tWH tW-M 13 A.A13 A.A14 A+A Platform -- cSH cm+M 14 A.G15 A.U525 G-U Wobble 28-XXVIII cWW cW-W 15 A.C16 A.G524 C-G WC 19-XIX cWW cW-W 16 A.G17 A.C523 G-C WC 19-XIX cWW cW-W 17 A.U18 A.A522 U-A WC 20-XX cWW cW-W 18 A.A19 A.U521 A-U WC 20-XX cWW cW-W 19 A.C20 A.G520 C-G WC 19-XIX cWW cW-W 20 A.A21 A.U519 A-U WC 20-XX cWW cW-W 21 A.C22 A.G518 C-G WC 19-XIX cWW cW-W 22 A.G23 A.C517 G-C -- -- cWW cW-W 23 A.G24 A.C516 G-C WC 19-XIX cWW cW-W 24 A.G26 A.A514 G-A Sheared 11-XI tSH tm-M 25 A.G26 A.A515 G-A -- -- tSH tm-M 26 A.G27 A.A513 G-A Sheared 11-XI tSH tm-M 27 A.A28 A.G512 A-G Sheared 11-XI tHS tM-m 28 A.U29 A.U511 U-U -- -- cWW cW-W 29 A.U29 A.G512 U-G -- -- cWS cW-m 30 A.G30 A.C510 G-C WC 19-XIX cWW cW-W 31 A.C31 A.G474 C-G ~Wobble -- cWW cW-W 32 A.C32 A.G474 C-G ~Wobble -- cWW cW-W 33 A.C33 A.A447 C-A ~rHoogsteen 25-XXV tWH tW-M 34 A.G35 A.C445 G-C WC 19-XIX cWW cW-W 35 A.G35 A.G450 G+G -- -- tSS tm+m 36 A.G36 A.C444 G-C WC 19-XIX cWW cW-W 37 A.C37 A.G442 C-G WC 19-XIX cWW cW-W 38 A.A38 A.U441 A-U WC 20-XX cWW cW-W 39 A.G39 A.C440 G-C WC 19-XIX cWW cW-W 40 A.U40 A.A439 U-A WC 20-XX cWW cW-W 41 A.C41 A.G438 C-G WC 19-XIX cWW cW-W 42 A.A42 A.U437 A-U WC 20-XX cWW cW-W 43 A.A44 A.U434 A-U WC 20-XX cWW cW-W 44 A.G45 A.C433 G-C WC 19-XIX cWW cW-W 45 A.G46 A.C179 G-C WC 19-XIX cWW cW-W 46 A.C47 A.G178 C-G WC 19-XIX cWW cW-W 47 A.G48 A.A49 G-A Platform -- cSW cm-W 48 A.A49 A.U120 A+U Hoogsteen 23-XXIII cHW cM+W 49 A.G51 A.A118 G-A Sheared 11-XI tSH tm-M 50 A.A52 A.A119 A+A -- -- tHH tM+M 51 A.A53 A.G117 A-G Sheared 11-XI tHS tM-m 52 A.G54 A.C116 G-C WC 19-XIX cWW cW-W 53 A.G54 A.A126 G+A -- -- t.W t.+W 54 A.G55 A.C115 G-C WC 19-XIX cWW cW-W 55 A.G55 A.A127 G+A Linker -- tSS tm+m 56 A.A56 A.U114 A-U WC 20-XX cWW cW-W 57 A.C57 A.G70 C-G WC 19-XIX cWW cW-W 58 A.G58 A.C69 G-C WC 19-XIX cWW cW-W 59 A.G58 A.A73 G+A Linker -- tSS tm+m 60 A.U59 A.G68 U-G -- -- cWW cW-W 61 A.G60 A.G88 G+G -- 06-VI cWH cW+M 62 A.C61 A.G93 C-G WC 19-XIX cWW cW-W 63 A.A63 A.A91 A+A -- 01-I tWW tW+W 64 A.A64 A.U90 A-U WC 20-XX cWW cW-W 65 A.U65 A.A89 U-A WC 20-XX cWW cW-W 66 A.U65 A.C456 U-C -- -- cSW cm-W 67 A.C66 A.G88 C-G WC 19-XIX cWW cW-W 68 A.U67 A.A74 U+A -- -- cWH cW+M 69 A.A74 A.G88 A-G -- -- cHH cM-M 70 A.G75 A.A111 G-A Imino 08-VIII cWW cW-W 71 A.C76 A.G110 C-G WC 19-XIX cWW cW-W 72 A.G77 A.C109 G-C WC 19-XIX cWW cW-W 73 A.U78 A.G108 U-G -- -- cWW cW-W 74 A.C79 A.G107 C-G WC 19-XIX cWW cW-W 75 A.G80 A.C106 G-C WC 19-XIX cWW cW-W 76 A.G80 A.A294 G+A Linker -- tSS tm+m 77 A.G81 A.C105 G-C WC 19-XIX cWW cW-W 78 A.U82 A.A104 U-A WC 20-XX cWW cW-W 79 A.A83 A.A103 A-A ~Sheared -- tSH tm-M 80 A.A84 A.G98 A+G Linker -- tWS tW+m 81 A.A84 A.A101 A-A -- -- tHW tM-W 82 A.G85 A.C97 G-C WC 19-XIX cWW cW-W 83 A.G85 A.A103 G+A Linker -- tSS tm+m 84 A.G86 A.C96 G-C WC 19-XIX cWW cW-W 85 A.U87 A.A95 U-A WC 20-XX cWW cW-W 86 A.G107 A.A346 G+A -- -- t.W t.+W 87 A.C116 A.A126 C-A -- -- cSW cm-W 88 A.G121 A.C130 G-C WC 19-XIX cWW cW-W 89 A.G122 A.C129 G-C WC 19-XIX cWW cW-W 90 A.G123 A.C128 G-C WC 19-XIX cWW cW-W 91 A.A131 A.U148 A-U WC 20-XX cWW cW-W 92 A.G132 A.C147 G-C WC 19-XIX cWW cW-W 93 A.U133 A.A146 U-A WC 20-XX cWW cW-W 94 A.G134 A.C145 G-C WC 19-XIX cWW cW-W 95 A.U135 A.A144 U-A WC 20-XX cWW cW-W 96 A.G136 A.C143 G-C WC 19-XIX cWW cW-W 97 A.U137 A.A142 U-A WC 20-XX cWW cW-W 98 A.U150 A.A176 U-A WC 20-XX cWW cW-W 99 A.C151 A.G175 C-G WC 19-XIX cWW cW-W 100 A.A152 A.U174 A-U WC 20-XX cWW cW-W 101 A.U153 A.A173 U-A WC 20-XX cWW cW-W 102 A.U154 A.A172 U-A WC 20-XX cWW cW-W 103 A.A155 A.U171 A-U WC 20-XX cWW cW-W 104 A.A156 A.U170 A-U WC 20-XX cWW cW-W 105 A.C157 A.G169 C-G WC 19-XIX cWW cW-W 106 A.U158 A.G168 U-G Wobble 28-XXVIII cWW cW-W 107 A.G159 A.A167 G-A Sheared 11-XI tSH tm-M 108 A.A160 A.U166 A-U rHoogsteen 24-XXIV tHW tM-W 109 A.A182 A.G215 A-G Imino 08-VIII cWW cW-W 110 A.C183 A.G214 C-G ~Wobble -- cWW cW-W 111 A.C184 A.G212 C-G WC 19-XIX cWW cW-W 112 A.C184 A.A213 C-A ~Wobble -- cWW cW-W 113 A.G185 A.C211 G-C WC 19-XIX cWW cW-W 114 A.G186 A.C210 G-C WC 19-XIX cWW cW-W 115 A.G187 A.C209 G-C WC 19-XIX cWW cW-W 116 A.G188 A.C208 G-C WC 19-XIX cWW cW-W 117 A.G189 A.A207 G-A -- -- tSH tm-M 118 A.A190 A.U206 A-U rHoogsteen 24-XXIV tHW tM-W 119 A.A191 A.A204 A+A -- 02-II tHH tM+M 120 A.C192 A.A203 C-A ~Sheared -- tHS tM-m 121 A.G194 A.C201 G-C WC 19-XIX cWW cW-W 122 A.G194 A.A251 G-A -- -- cSS cm-m 123 A.C198 A.G248 C-G WC 19-XIX cWW cW-W 124 A.G205 A.U206 G+U Platform -- cSH cm+M 125 A.G214 A.A216 G-A -- -- cWS cW-m 126 A.G215 A.A432 G+A -- -- tSW tm+W 127 A.A216 A.U431 A-U rHoogsteen 24-XXIV tHW tM-W 128 A.A217 A.U431 A-U -- -- tHW tM-W 129 A.G220 A.A428 G-A -- -- tWH tW-M 130 A.A221 A.U427 A-U rHoogsteen 24-XXIV tHW tM-W 131 A.A222 A.G232 A-G Sheared 11-XI tHS tM-m 132 A.A223 A.G407 A+G Linker -- tSS tm+m 133 A.U224 A.A231 U-A WC 20-XX cWW cW-W 134 A.C225 A.G230 C-G WC 19-XIX cWW cW-W 135 A.A226 A.C229 A-C -- -- tS. tm-. 136 A.A233 A.A428 A+A -- -- cWH cW+M 137 A.A233 A.A429 A+A -- -- tWW tW+W 138 A.U234 A.G263 U-G -- -- cW. cW-. 139 A.U234 A.A429 U+A rWC 21-XXI tWW tW+W 140 A.U234 A.A430 U+A rWC 21-XXI tWW tW+W 141 A.U235 A.A262 U-A WC 20-XX cWW cW-W 142 A.C236 A.G261 C-G WC 19-XIX cWW cW-W 143 A.C237 A.G260 C-G WC 19-XIX cWW cW-W 144 A.C238 A.G259 C-G WC 19-XIX cWW cW-W 145 A.C239 A.G258 C-G WC 19-XIX cWW cW-W 146 A.C240 A.C257 C-C -- -- tWW tW-W 147 A.A241 A.A256 A+A -- 02-II tHH tM+M 148 A.G242 A.U243 G+U Platform -- cSH cm+M 149 A.U243 A.A255 U-A rHoogsteen 24-XXIV tWH tW-M 150 A.A244 A.G254 A-G Sheared 11-XI tHS tM-m 151 A.G245 A.C253 G-C WC 19-XIX cWW cW-W 152 A.C246 A.G252 C-G WC 19-XIX cWW cW-W 153 A.G247 A.A251 G-A Sheared 11-XI tSH tm-M 154 A.G259 A.A621 G-A -- -- cSS cm-m 155 A.G260 A.A608 G+A -- -- tSW tm+W 156 A.G266 A.C426 G-C WC 19-XIX cWW cW-W 157 A.C267 A.G425 C-G WC 19-XIX cWW cW-W 158 A.C268 A.G424 C-G WC 19-XIX cWW cW-W 159 A.C269 A.G370 C-G WC 19-XIX cWW cW-W 160 A.G271 A.C366 G-C WC 19-XIX cWW cW-W 161 A.A272 A.U365 A-U WC 20-XX cWW cW-W 162 A.G273 A.C364 G-C WC 19-XIX cWW cW-W 163 A.C274 A.G363 C-G WC 19-XIX cWW cW-W 164 A.C275 A.A362 C-A -- -- tWH tW-M 165 A.U276 A.A278 U+A -- -- cSH cm+M 166 A.A279 A.G361 A-G Sheared 11-XI tHS tM-m 167 A.C281 A.G359 C-G WC 19-XIX cWW cW-W 168 A.A282 A.U358 A-U WC 20-XX cWW cW-W 169 A.G283 A.C357 G-C WC 19-XIX cWW cW-W 170 A.U284 A.G356 U-G Wobble 28-XXVIII cWW cW-W 171 A.G285 A.U355 G-U Wobble 28-XXVIII cWW cW-W 172 A.U286 A.A354 U-A WC 20-XX cWW cW-W 173 A.U288 A.A352 U-A WC 20-XX cWW cW-W 174 A.G289 A.C351 G-C WC 19-XIX cWW cW-W 175 A.U290 A.G350 U-G -- -- cWW cW-W 176 A.G291 A.U349 G-U Wobble 28-XXVIII cWW cW-W 177 A.U292 A.A348 U-A WC 20-XX cWW cW-W 178 A.U292 A.U349 U-U -- 16-XVI cWW cW-W 179 A.A294 A.A344 A-A -- -- tHW tM-W 180 A.G295 A.C343 G-C WC 19-XIX cWW cW-W 181 A.U296 A.A342 U-A WC 20-XX cWW cW-W 182 A.G297 A.C341 G-C WC 19-XIX cWW cW-W 183 A.G298 A.A340 G-A Sheared 11-XI tSH tm-M 184 A.A299 A.G338 A-G -- -- tHW tM-W 185 A.A300 A.G333 A+G Linker -- tSS tm+m 186 A.G301 A.C316 G-C WC 19-XIX cWW cW-W 187 A.C302 A.G315 C-G WC 19-XIX cWW cW-W 188 A.G303 A.C314 G-C WC 19-XIX cWW cW-W 189 A.U304 A.G313 U-G -- -- cWW cW-W 190 A.C305 A.G312 C-G WC 19-XIX cWW cW-W 191 A.U306 A.A310 U-A rHoogsteen 24-XXIV tWH tW-M 192 A.G307 A.A330 G+A -- 10-X tSW tm+W 193 A.G308 A.G329 G+G -- 04-IV tSS tm+m 194 A.G308 A.A477 G-A Sheared 11-XI tSH tm-M 195 A.G317 A.C334 G-C WC 19-XIX cWW cW-W 196 A.C318 A.G333 C-G WC 19-XIX cWW cW-W 197 A.G319 A.C323 G-C ~Wobble -- cWW cW-W 198 A.A322 A.U339 A-U -- -- cSW cm-W 199 A.C323 A.A1205 C-A -- -- tHW tM-W 200 A.G325 A.C337 G-C WC 19-XIX cWW cW-W 201 A.G326 A.C336 G-C WC 19-XIX cWW cW-W 202 A.G327 A.C335 G-C WC 19-XIX cWW cW-W 203 A.U328 A.A332 U-A rHoogsteen 24-XXIV tWH tW-M 204 A.A345 A.A346 A+A Platform -- cSH cm+M 205 A.A345 A.A347 A+A -- -- tSW tm+W 206 A.A371 A.A402 A+A -- 02-II tHH tM+M 207 A.G372 A.U373 G+U Platform -- cSH cm+M 208 A.U373 A.A401 U-A -- -- tWH tW-M 209 A.A374 A.G400 A-G Sheared 11-XI tHS tM-m 210 A.G375 A.U399 G-U Wobble 28-XXVIII cWW cW-W 211 A.G376 A.C398 G-C WC 19-XIX cWW cW-W 212 A.C378 A.G396 C-G WC 19-XIX cWW cW-W 213 A.C378 A.U397 C-U -- -- cWW cW-W 214 A.G380 A.C394 G-C WC 19-XIX cWW cW-W 215 A.G381 A.C393 G-C WC 19-XIX cWW cW-W 216 A.A382 A.U387 A-U -- -- cHH cM-M 217 A.A382 A.U392 A-U WC 20-XX cWW cW-W 218 A.C383 A.A391 C-A -- -- cW. cW-. 219 A.G406 A.C421 G-C WC 19-XIX cWW cW-W 220 A.G407 A.C420 G-C WC 19-XIX cWW cW-W 221 A.G408 A.U419 G-U -- -- cWW cW-W 222 A.G409 A.C418 G-C WC 19-XIX cWW cW-W 223 A.G410 A.C417 G-C WC 19-XIX cWW cW-W 224 A.A443 A.C1200 A-C -- -- cSS cm-m 225 A.A443 A.G1245 A+G Linker -- tSS tm+m 226 A.G446 A.A454 G+A -- 10-X tSW tm+W 227 A.U448 A.U1258 U-U -- -- cWS cW-m 228 A.A449 A.A454 A-A -- 05-V tWH tW-M 229 A.G452 A.A457 G+A Linker -- tSS tm+m 230 A.A457 A.A471 A+A -- 02-II tHH tM+M 231 A.G458 A.U459 G+U Platform -- cSH cm+M 232 A.U459 A.A470 U-A rHoogsteen 24-XXIV tWH tW-M 233 A.A460 A.G469 A-G Sheared 11-XI tHS tM-m 234 A.C461 A.G468 C-G WC 19-XIX cWW cW-W 235 A.C462 A.G467 C-G WC 19-XIX cWW cW-W 236 A.G463 A.A466 G-A Sheared 11-XI tSH tm-M 237 A.G465 A.U683 G-U -- -- cSS cm-m 238 A.A466 A.G682 A-G -- -- cSS cm-m 239 A.C475 A.A479 C-A -- -- tWH tW-M 240 A.C475 A.A505 C-A -- -- cSS cm-m 241 A.G476 A.A480 G-A Sheared 11-XI tSH tm-M 242 A.A479 A.A503 A+A -- 01-I tWW tW+W 243 A.A480 A.A505 A+A -- -- tWW tW+W 244 A.G481 A.C509 G-C WC 19-XIX cWW cW-W 245 A.A482 A.A497 A-A -- -- cSW cm-W 246 A.A482 A.A507 A+A -- -- tHH tM+M 247 A.C484 A.G496 C-G WC 19-XIX cWW cW-W 248 A.C485 A.G495 C-G WC 19-XIX cWW cW-W 249 A.C486 A.G494 C-G WC 19-XIX cWW cW-W 250 A.C487 A.G493 C-G WC 19-XIX cWW cW-W 251 A.C487 A.G494 C-G -- -- cWW cW-W 252 A.G488 A.A492 G-A Sheared 11-XI tSH tm-M 253 A.G498 A.G506 G-G -- -- cW. cW-. 254 A.U499 A.A503 U-A rHoogsteen 24-XXIV tWH tW-M 255 A.G500 A.A505 G-A Sheared 11-XI tSH tm-M 256 A.A514 A.C581 A-C -- -- cSS cm-m 257 A.A526 A.G2625 A+G Linker -- tSS tm+m 258 A.A529 A.U2041 A-U rHoogsteen 24-XXIV tHW tM-W 259 A.C531 A.G2018 C-G WC 19-XIX cWW cW-W 260 A.G533 A.C560 G-C WC 19-XIX cWW cW-W 261 A.U534 A.G559 U-G -- -- cWW cW-W 262 A.G535 A.U558 G-U Wobble 28-XXVIII cWW cW-W 263 A.G536 A.C557 G-C WC 19-XIX cWW cW-W 264 A.G537 A.A556 G-A Sheared 11-XI tSH tm-M 265 A.A538 A.G555 A-G -- -- tHS tM-m 266 A.G539 A.U554 G-U Wobble 28-XXVIII cWW cW-W 267 A.C540 A.G553 C-G WC 19-XIX cWW cW-W 268 A.A541 A.U552 A-U WC 20-XX cWW cW-W 269 A.C542 A.G551 C-G WC 19-XIX cWW cW-W 270 A.G543 A.C550 G-C WC 19-XIX cWW cW-W 271 A.C544 A.C550 C-C -- -- cWW cW-W 272 A.U562 A.A2033 U-A WC 20-XX cWW cW-W 273 A.A563 A.G578 A-G Imino 08-VIII cWW cW-W 274 A.C564 A.G577 C-G WC 19-XIX cWW cW-W 275 A.C565 A.U576 C-U -- -- cWW cW-W 276 A.U566 A.A575 U-A WC 20-XX cWW cW-W 277 A.U567 A.A575 U-A -- -- cWW cW-W 278 A.U568 A.A2030 U-A -- -- t.H t.-M 279 A.A572 A.A2033 A-A -- -- cW. cW-. 280 A.G579 A.C1261 G-C WC 19-XIX cWW cW-W 281 A.U580 A.A1260 U-A WC 20-XX cWW cW-W 282 A.C581 A.G1259 C-G WC 19-XIX cWW cW-W 283 A.A582 A.U1258 A-U WC 20-XX cWW cW-W 284 A.G583 A.C1257 G-C WC 19-XIX cWW cW-W 285 A.C584 A.G1256 C-G WC 19-XIX cWW cW-W 286 A.G585 A.A1254 G-A -- -- tSH tm-M 287 A.A586 A.G809 A+G -- -- tWS tW+m 288 A.A586 A.C1251 A-C -- -- tHW tM-W 289 A.C587 A.U810 C+U -- -- cHW cM+W 290 A.U588 A.A670 U+A -- -- tWS tW+m 291 A.U589 A.A668 U-A WC 20-XX cWW cW-W 292 A.A590 A.U667 A-U WC 20-XX cWW cW-W 293 A.U591 A.A666 U-A WC 20-XX cWW cW-W 294 A.A592 A.U665 A-U WC 20-XX cWW cW-W 295 A.U593 A.G664 U-G Wobble 28-XXVIII cWW cW-W 296 A.U594 A.G663 U-G Wobble 28-XXVIII cWW cW-W 297 A.C595 A.G662 C-G WC 19-XIX cWW cW-W 298 A.U596 A.A661 U-A WC 20-XX cWW cW-W 299 A.G597 A.C660 G-C WC 19-XIX cWW cW-W 300 A.U598 A.G659 U-G Wobble 28-XXVIII cWW cW-W 301 A.A599 A.U658 A-U WC 20-XX cWW cW-W 302 A.G600 A.U657 G-U Wobble 28-XXVIII cWW cW-W 303 A.C601 A.G656 C-G WC 19-XIX cWW cW-W 304 A.A603 A.G625 A+G Linker -- tWS tW+m 305 A.G604 A.C624 G-C WC 19-XIX cWW cW-W 306 A.G605 A.C623 G-C WC 19-XIX cWW cW-W 307 A.U606 A.G622 U-G -- -- cWW cW-W 308 A.U607 A.A621 U-A -- -- tWH tW-M 309 A.A608 A.G619 A-G -- -- tHW tM-W 310 A.A609 A.G619 A-G -- -- tHS tM-m 311 A.C610 A.G618 C-G WC 19-XIX cWW cW-W 312 A.C611 A.G617 C-G WC 19-XIX cWW cW-W 313 A.G612 A.A616 G-A Sheared 11-XI tSH tm-M 314 A.G628 A.C635 G-C WC 19-XIX cWW cW-W 315 A.G629 A.C634 G-C WC 19-XIX cWW cW-W 316 A.G630 A.A633 G-A Sheared 11-XI tSH tm-M 317 A.A637 A.G651 A+G Linker -- tSS tm+m 318 A.G638 A.C650 G-C WC 19-XIX cWW cW-W 319 A.U639 A.G649 U-G Wobble 28-XXVIII cWW cW-W 320 A.C640 A.G648 C-G WC 19-XIX cWW cW-W 321 A.U641 A.G647 U-G Wobble 28-XXVIII cWW cW-W 322 A.C671 A.G809 C-G WC 19-XIX cWW cW-W 323 A.C672 A.G808 C-G WC 19-XIX cWW cW-W 324 A.C673 A.U807 C-U -- -- cWW cW-W 325 A.G674 A.C806 G-C WC 19-XIX cWW cW-W 326 A.A675 A.U803 A-U rHoogsteen 24-XXIV tHW tM-W 327 A.A676 A.A802 A-A -- 05-V tHW tM-W 328 A.A677 A.A800 A+A -- 01-I tWW tW+W 329 A.C678 A.G799 C-G WC 19-XIX cWW cW-W 330 A.C679 A.G798 C-G WC 19-XIX cWW cW-W 331 A.C680 A.G797 C-G WC 19-XIX cWW cW-W 332 A.G681 A.C796 G-C WC 19-XIX cWW cW-W 333 A.G682 A.C795 G-C WC 19-XIX cWW cW-W 334 A.U683 A.A794 U-A WC 20-XX cWW cW-W 335 A.G684 A.G775 G-G -- 07-VII tWH tW-M 336 A.A685 A.U688 A+U -- -- tSW tm+W 337 A.A685 A.G778 A+G -- 10-X tWS tW+m 338 A.A685 A.C787 A-C -- -- cWS cW-m 339 A.C687 A.A1780 C-A -- -- cSW cm-W 340 A.A689 A.U773 A-U WC 20-XX cWW cW-W 341 A.G690 A.C772 G-C WC 19-XIX cWW cW-W 342 A.C691 A.G771 C-G WC 19-XIX cWW cW-W 343 A.C692 A.G770 C-G WC 19-XIX cWW cW-W 344 A.A693 A.U769 A-U WC 20-XX cWW cW-W 345 A.A693 A.A1353 A-A -- -- cSW cm-W 346 A.U694 A.G768 U-G Wobble 28-XXVIII cWW cW-W 347 A.G695 A.U767 G-U -- -- cWW cW-W 348 A.G696 A.U766 G-U Wobble 28-XXVIII cWW cW-W 349 A.G697 A.C765 G-C WC 19-XIX cWW cW-W 350 A.C698 A.G763 C-G WC 19-XIX cWW cW-W 351 A.A699 A.G733 A-G Sheared 11-XI tHS tM-m 352 A.A699 A.G1633 A-G -- -- cWS cW-m 353 A.G700 A.C732 G-C WC 19-XIX cWW cW-W 354 A.G701 A.C731 G-C WC 19-XIX cWW cW-W 355 A.U702 A.A730 U-A WC 20-XX cWW cW-W 356 A.U703 A.G728 U-G -- -- cWW cW-W 357 A.G704 A.A727 G-A Sheared 11-XI tSH tm-M 358 A.A705 A.G726 A-G Sheared 11-XI tHS tM-m 359 A.A706 A.G725 A-G Sheared 11-XI tHS tM-m 360 A.G707 A.U724 G-U Wobble 28-XXVIII cWW cW-W 361 A.G708 A.C723 G-C WC 19-XIX cWW cW-W 362 A.U709 A.A722 U-A WC 20-XX cWW cW-W 363 A.U710 A.A721 U-A WC 20-XX cWW cW-W 364 A.G711 A.U720 G-U Wobble 28-XXVIII cWW cW-W 365 A.G712 A.C719 G-C WC 19-XIX cWW cW-W 366 A.G713 A.A718 G-A -- -- tSH tm-M 367 A.U714 A.C717 U-C -- -- tSH tm-M 368 A.C736 A.G760 C-G WC 19-XIX cWW cW-W 369 A.C737 A.G759 C-G WC 19-XIX cWW cW-W 370 A.C740 A.G757 C-G WC 19-XIX cWW cW-W 371 A.U741 A.A756 U-A WC 20-XX cWW cW-W 372 A.A742 A.U755 A-U WC 20-XX cWW cW-W 373 A.A743 A.U754 A-U WC 20-XX cWW cW-W 374 A.U744 A.A753 U-A WC 20-XX cWW cW-W 375 A.G745 A.A750 G+A -- -- tSW tm+W 376 A.U747 A.A2014 U-A -- -- cWS cW-m 377 A.A749 A.A753 A-A -- -- cWS cW-m 378 A.A764 A.U1775 A+U Hoogsteen 23-XXIII cHW cM+W 379 A.A764 A.A1789 A-A -- -- cWS cW-m 380 A.G770 A.A1354 G+A Linker -- tSS tm+m 381 A.G774 A.G777 G-G -- -- cSS cm-m 382 A.G774 A.C787 G+C -- -- tWS tW+m 383 A.G775 A.C791 G-C WC 19-XIX cWW cW-W 384 A.G777 A.C787 G-C WC 19-XIX cWW cW-W 385 A.G778 A.C786 G-C WC 19-XIX cWW cW-W 386 A.U779 A.G785 U-G -- -- cWW cW-W 387 A.G780 A.A783 G-A Sheared 11-XI tSH tm-M 388 A.G808 A.A1254 G-A -- -- cSS cm-m 389 A.C812 A.G1195 C-G WC 19-XIX cWW cW-W 390 A.U813 A.A1194 U-A WC 20-XX cWW cW-W 391 A.U813 A.G1225 U-G -- -- cSS cm-m 392 A.C814 A.G1193 C-G WC 19-XIX cWW cW-W 393 A.C815 A.G1192 C-G WC 19-XIX cWW cW-W 394 A.C816 A.G1191 C-G WC 19-XIX cWW cW-W 395 A.C817 A.G1190 C-G WC 19-XIX cWW cW-W 396 A.G818 A.A1189 G-A Sheared 11-XI tSH tm-M 397 A.A819 A.G942 A+G Linker -- tSS tm+m 398 A.A819 A.U1188 A-U rHoogsteen 24-XXIV tHW tM-W 399 A.A820 A.A973 A+A -- -- tHH tM+M 400 A.A821 A.A972 A-A ~Sheared -- tHS tM-m 401 A.G822 A.C835 G-C WC 19-XIX cWW cW-W 402 A.C823 A.G834 C-G WC 19-XIX cWW cW-W 403 A.U824 A.A833 U-A WC 20-XX cWW cW-W 404 A.A825 A.U832 A-U WC 20-XX cWW cW-W 405 A.U826 A.G831 U-G Wobble 28-XXVIII cWW cW-W 406 A.C837 A.G942 C-G WC 19-XIX cWW cW-W 407 A.C838 A.G940 C-G WC 19-XIX cWW cW-W 408 A.U839 A.G939 U-G Wobble 28-XXVIII cWW cW-W 409 A.C840 A.G938 C-G WC 19-XIX cWW cW-W 410 A.G841 A.C937 G-C WC 19-XIX cWW cW-W 411 A.U842 A.A936 U-A WC 20-XX cWW cW-W 412 A.G843 A.C935 G-C WC 19-XIX cWW cW-W 413 A.A844 A.U934 A-U WC 20-XX cWW cW-W 414 A.U847 A.A933 U-A WC 20-XX cWW cW-W 415 A.C848 A.G930 C-G WC 19-XIX cWW cW-W 416 A.A849 A.U929 A-U WC 20-XX cWW cW-W 417 A.U850 A.A928 U-A WC 20-XX cWW cW-W 418 A.C851 A.G926 C-G WC 19-XIX cWW cW-W 419 A.C851 A.A927 C-A -- -- cWW cW-W 420 A.U852 A.A925 U-A WC 20-XX cWW cW-W 421 A.C853 A.G924 C-G WC 19-XIX cWW cW-W 422 A.C854 A.G923 C-G WC 19-XIX cWW cW-W 423 A.G855 A.C922 G-C WC 19-XIX cWW cW-W 424 A.G856 A.C921 G-C WC 19-XIX cWW cW-W 425 A.G857 A.A920 G-A Imino 08-VIII cWW cW-W 426 A.G858 A.U919 G-U -- -- cWW cW-W 427 A.G859 A.U860 G+U Platform -- cSH cm+M 428 A.U860 A.A917 U-A rHoogsteen 24-XXIV tWH tW-M 429 A.U860 A.A918 U-A -- -- tWH tW-M 430 A.A861 A.G916 A-G Sheared 11-XI tHS tM-m 431 A.G862 A.C915 G-C WC 19-XIX cWW cW-W 432 A.A863 A.U913 A-U WC 20-XX cWW cW-W 433 A.G864 A.A866 G+A -- -- cSH cm+M 434 A.G864 A.C912 G-C WC 19-XIX cWW cW-W 435 A.C865 A.A909 C-A ~rHoogsteen 25-XXV tWH tW-M 436 A.C867 A.C912 C-C -- -- cWS cW-m 437 A.U913 A.C915 U+C -- -- cWH cW+M 438 A.U931 A.G1166 U-G -- -- cWW cW-W 439 A.C946 A.G971 C-G WC 19-XIX cWW cW-W 440 A.A947 A.U970 A-U WC 20-XX cWW cW-W 441 A.C948 A.G969 C-G WC 19-XIX cWW cW-W 442 A.G949 A.C968 G-C WC 19-XIX cWW cW-W 443 A.G950 A.U967 G-U -- -- cWW cW-W 444 A.C951 A.G966 C-G WC 19-XIX cWW cW-W 445 A.G952 A.C965 G-C WC 19-XIX cWW cW-W 446 A.G953 A.C964 G-C WC 19-XIX cWW cW-W 447 A.G954 A.U963 G-U -- -- cWW cW-W 448 A.U955 A.G962 U-G Wobble 28-XXVIII cWW cW-W 449 A.G956 A.A960 G-A Sheared 11-XI tSH tm-M 450 A.A973 A.G1187 A-G -- -- cSS cm-m 451 A.G974 A.A990 G+A -- -- tHH tM+M 452 A.A975 A.A988 A-A -- -- tHS tM-m 453 A.G976 A.C987 G-C WC 19-XIX cWW cW-W 454 A.G977 A.C986 G-C WC 19-XIX cWW cW-W 455 A.G978 A.C985 G-C WC 19-XIX cWW cW-W 456 A.A981 A.G2027 A+G Linker -- tWS tW+m 457 A.C991 A.G1163 C-G WC 19-XIX cWW cW-W 458 A.C992 A.G1162 C-G WC 19-XIX cWW cW-W 459 A.G993 A.C1161 G-C WC 19-XIX cWW cW-W 460 A.C994 A.G1160 C-G WC 19-XIX cWW cW-W 461 A.A996 A.U1159 A-U WC 20-XX cWW cW-W 462 A.G997 A.C1158 G-C WC 19-XIX cWW cW-W 463 A.C998 A.G1157 C-G WC 19-XIX cWW cW-W 464 A.U999 A.A1155 U-A rHoogsteen 24-XXIV tWH tW-M 465 A.A1001 A.G1154 A-G Sheared 11-XI tHS tM-m 466 A.G1002 A.C1153 G-C WC 19-XIX cWW cW-W 467 A.G1003 A.A1010 G+A Linker -- tSS tm+m 468 A.G1003 A.C1152 G-C WC 19-XIX cWW cW-W 469 A.U1004 A.A1151 U-A WC 20-XX cWW cW-W 470 A.C1005 A.G1138 C-G WC 19-XIX cWW cW-W 471 A.C1006 A.G1137 C-G WC 19-XIX cWW cW-W 472 A.C1007 A.G1136 C-G WC 19-XIX cWW cW-W 473 A.A1008 A.A1009 A+A Platform -- cSH cm+M 474 A.G1011 A.C1150 G-C WC 19-XIX cWW cW-W 475 A.U1012 A.A1143 U+A Hoogsteen 23-XXIII cWH cW+M 476 A.C1013 A.G1149 C-G WC 19-XIX cWW cW-W 477 A.A1014 A.U1148 A-U WC 20-XX cWW cW-W 478 A.U1015 A.A1147 U-A WC 20-XX cWW cW-W 479 A.G1016 A.C1146 G-C WC 19-XIX cWW cW-W 480 A.G1017 A.C1145 G-C WC 19-XIX cWW cW-W 481 A.U1018 A.A1144 U-A WC 20-XX cWW cW-W 482 A.A1021 A.U1141 A+U rWC 21-XXI tWW tW+W 483 A.G1022 A.U1023 G+U Platform -- cSH cm+M 484 A.G1022 A.A1142 G+A -- -- tWW tW+W 485 A.G1024 A.C1140 G-C WC 19-XIX cWW cW-W 486 A.G1025 A.G1139 G+G -- -- tWW tW+W 487 A.G1026 A.A1127 G-A -- -- tWH tW-M 488 A.A1029 A.G1125 A-G Sheared 11-XI tHS tM-m 489 A.C1030 A.G1124 C-G WC 19-XIX cWW cW-W 490 A.G1031 A.C1123 G-C WC 19-XIX cWW cW-W 491 A.G1128 A.A1134 G-A -- -- cHH cM-M 492 A.G1131 A.A1133 G+A -- -- cSH cm+M 493 A.C1135 A.G1138 C-G -- -- tHH tM-M 494 A.G1139 A.A1143 G+A -- -- tSW tm+W 495 A.C1164 A.G1185 C-G WC 19-XIX cWW cW-W 496 A.A1165 A.U1184 A-U WC 20-XX cWW cW-W 497 A.G1166 A.U1183 G-U Wobble 28-XXVIII cWW cW-W 498 A.C1167 A.G1182 C-G WC 19-XIX cWW cW-W 499 A.G1168 A.U1181 G-U Wobble 28-XXVIII cWW cW-W 500 A.G1171 A.C1178 G-C WC 19-XIX cWW cW-W 501 A.C1172 A.G1177 C-G WC 19-XIX cWW cW-W 502 A.G1195 A.A1226 G+A Linker -- tSW tm+W 503 A.C1196 A.G1250 C-G WC 19-XIX cWW cW-W 504 A.G1197 A.U1249 G-U Wobble 28-XXVIII cWW cW-W 505 A.U1198 A.A1247 U-A WC 20-XX cWW cW-W 506 A.U1199 A.A1246 U-A WC 20-XX cWW cW-W 507 A.C1200 A.G1245 C-G WC 19-XIX cWW cW-W 508 A.U1201 A.A1244 U-A WC 20-XX cWW cW-W 509 A.G1202 A.C1243 G-C WC 19-XIX cWW cW-W 510 A.A1204 A.A1241 A+A -- -- tHH tM+M 511 A.A1204 A.U1242 A+U -- -- cH. cM+. 512 A.G1206 A.U1240 G-U Wobble 28-XXVIII cWW cW-W 513 A.C1207 A.G1239 C-G WC 19-XIX cWW cW-W 514 A.C1208 A.G1238 C-G WC 19-XIX cWW cW-W 515 A.G1212 A.A1237 G-A Sheared 11-XI tSH tm-M 516 A.A1213 A.G1236 A-G Sheared 11-XI tHS tM-m 517 A.A1214 A.G1235 A-G Sheared 11-XI tHS tM-m 518 A.G1215 A.U1234 G-U Wobble 28-XXVIII cWW cW-W 519 A.G1216 A.C1233 G-C WC 19-XIX cWW cW-W 520 A.U1217 A.G1232 U-G -- -- cWW cW-W 521 A.G1218 A.U1231 G-U Wobble 28-XXVIII cWW cW-W 522 A.U1219 A.A1230 U-A WC 20-XX cWW cW-W 523 A.G1220 A.C1229 G-C WC 19-XIX cWW cW-W 524 A.C1221 A.G1228 C-G WC 19-XIX cWW cW-W 525 A.U1222 A.G1227 U-G Wobble 28-XXVIII cWW cW-W 526 A.G1223 A.A1226 G-A -- -- tWH tW-M 527 A.A1262 A.U2017 A-U WC 20-XX cWW cW-W 528 A.U1263 A.U2016 U-U -- 16-XVI cWW cW-W 529 A.A1264 A.A2015 A-A ~Sheared -- tSH tm-M 530 A.A1265 A.A2014 A+A -- 02-II tHH tM+M 531 A.G1266 A.U1267 G+U Platform -- cSH cm+M 532 A.U1267 A.A2013 U-A rHoogsteen 24-XXIV tWH tW-M 533 A.A1268 A.G2012 A-G Sheared 11-XI tHS tM-m 534 A.A1269 A.U2011 A-U WC 20-XX cWW cW-W 535 A.C1270 A.G2010 C-G WC 19-XIX cWW cW-W 536 A.A1274 A.C1644 A+C -- -- tWS tW+m 537 A.A1276 A.U1294 A-U WC 20-XX cWW cW-W 538 A.G1277 A.C1293 G-C WC 19-XIX cWW cW-W 539 A.C1278 A.G1292 C-G WC 19-XIX cWW cW-W 540 A.G1279 A.C1291 G-C WC 19-XIX cWW cW-W 541 A.G1280 A.C1290 G-C WC 19-XIX cWW cW-W 542 A.G1281 A.C1289 G-C WC 19-XIX cWW cW-W 543 A.G1283 A.U1329 G-U -- -- cSW cm-W 544 A.G1288 A.U1326 G-U ~rHoogsteen -- tHW tM-W 545 A.C1295 A.G1645 C-G WC 19-XIX cWW cW-W 546 A.G1296 A.C1644 G-C WC 19-XIX cWW cW-W 547 A.C1297 A.G1643 C-G WC 19-XIX cWW cW-W 548 A.C1298 A.G1642 C-G WC 19-XIX cWW cW-W 549 A.G1299 A.A1641 G-A Sheared 11-XI tSH tm-M 550 A.G1303 A.C1625 G-C WC 19-XIX cWW cW-W 551 A.A1304 A.U1624 A-U WC 20-XX cWW cW-W 552 A.C1306 A.G1622 C-G WC 19-XIX cWW cW-W 553 A.C1306 A.G1623 C-G -- -- cWW cW-W 554 A.A1308 A.C1606 A-C -- -- tHW tM-W 555 A.G1309 A.C1605 G-C WC 19-XIX cWW cW-W 556 A.G1310 A.C1604 G-C WC 19-XIX cWW cW-W 557 A.G1310 A.A1610 G-A -- -- cSS cm-m 558 A.G1311 A.A1603 G-A -- -- tSH tm-M 559 A.U1313 A.A1603 U-A WC 20-XX cWW cW-W 560 A.C1314 A.G1338 C-G WC 19-XIX cWW cW-W 561 A.C1315 A.G1337 C-G WC 19-XIX cWW cW-W 562 A.U1316 A.A1336 U-A WC 20-XX cWW cW-W 563 A.G1317 A.C1335 G-C WC 19-XIX cWW cW-W 564 A.U1318 A.G1334 U-G Wobble 28-XXVIII cWW cW-W 565 A.C1319 A.G1333 C-G WC 19-XIX cWW cW-W 566 A.C1320 A.C1323 C+C -- -- tWW tW+W 567 A.C1320 A.G1331 C-G -- -- tWH tW-M 568 A.A1322 A.G1333 A-G -- -- cWS cW-m 569 A.G1324 A.C1330 G-C WC 19-XIX cWW cW-W 570 A.G1324 A.A1616 G+A -- -- cSH cm+M 571 A.G1324 A.U1647 G-U -- -- cSW cm-W 572 A.A1328 A.U1647 A+U rWC 21-XXI tWW tW+W 573 A.G1338 A.A1393 G+A Linker -- tSW tm+W 574 A.A1342 A.U1602 A-U rHoogsteen 24-XXIV tHW tM-W 575 A.G1343 A.A1384 G+A Linker -- tSS tm+m 576 A.G1343 A.C1404 G-C WC 19-XIX cWW cW-W 577 A.U1344 A.A1403 U-A WC 20-XX cWW cW-W 578 A.C1345 A.G1601 C-G WC 19-XIX cWW cW-W 579 A.G1346 A.C1600 G-C WC 19-XIX cWW cW-W 580 A.A1347 A.U1599 A-U WC 20-XX cWW cW-W 581 A.C1349 A.G1382 C-G WC 19-XIX cWW cW-W 582 A.C1350 A.G1381 C-G WC 19-XIX cWW cW-W 583 A.C1351 A.G1380 C-G WC 19-XIX cWW cW-W 584 A.U1352 A.A1378 U-A rHoogsteen 24-XXIV tWH tW-M 585 A.A1353 A.U1379 A-U WC 20-XX cWW cW-W 586 A.A1354 A.G1377 A-G Sheared 11-XI tHS tM-m 587 A.G1355 A.C1376 G-C WC 19-XIX cWW cW-W 588 A.G1356 A.U1375 G-U Wobble 28-XXVIII cWW cW-W 589 A.C1357 A.G1374 C-G WC 19-XIX cWW cW-W 590 A.A1359 A.U1372 A-U rHoogsteen 24-XXIV tHW tM-W 591 A.G1360 A.G1371 G-G ~Sheared -- tHS tM-m 592 A.G1361 A.C1370 G-C WC 19-XIX cWW cW-W 593 A.C1362 A.G1369 C-G WC 19-XIX cWW cW-W 594 A.C1363 A.G1368 C-G WC 19-XIX cWW cW-W 595 A.G1364 A.A1367 G-A Sheared 11-XI tSH tm-M 596 A.G1369 A.A1809 G+A -- -- tSW tm+W 597 A.G1369 A.A1810 G+A Linker -- tSS tm+m 598 A.A1385 A.U1402 A-U WC 20-XX cWW cW-W 599 A.C1386 A.G1401 C-G WC 19-XIX cWW cW-W 600 A.A1387 A.U1400 A-U WC 20-XX cWW cW-W 601 A.G1388 A.C1399 G-C WC 19-XIX cWW cW-W 602 A.G1389 A.C1398 G-C WC 19-XIX cWW cW-W 603 A.U1390 A.A1395 U-A rHoogsteen 24-XXIV tWH tW-M 604 A.U1391 A.A1393 U-A -- -- tWH tW-M 605 A.U1397 A.U1602 U+U -- -- tWW tW+W 606 A.U1405 A.A1597 U-A WC 20-XX cWW cW-W 607 A.U1406 A.A1596 U-A WC 20-XX cWW cW-W 608 A.G1407 A.C1595 G-C WC 19-XIX cWW cW-W 609 A.G1408 A.U1594 G-U -- -- cWW cW-W 610 A.U1409 A.A1593 U-A WC 20-XX cWW cW-W 611 A.G1410 A.C1592 G-C WC 19-XIX cWW cW-W 612 A.U1411 A.A1591 U-A WC 20-XX cWW cW-W 613 A.U1412 A.A1590 U-A WC 20-XX cWW cW-W 614 A.A1413 A.U1589 A-U WC 20-XX cWW cW-W 615 A.C1414 A.G1588 C-G WC 19-XIX cWW cW-W 616 A.U1415 A.G1587 U-G Wobble 28-XXVIII cWW cW-W 617 A.C1417 A.G1581 C-G WC 19-XIX cWW cW-W 618 A.C1417 A.C1582 C-C -- -- cWW cW-W 619 A.G1418 A.A1580 G-A Sheared 11-XI tSH tm-M 620 A.A1419 A.U1578 A-U rHoogsteen 24-XXIV tHW tM-W 621 A.G1421 A.C1577 G-C WC 19-XIX cWW cW-W 622 A.G1422 A.C1498 G+C -- -- tSW tm+W 623 A.G1422 A.U1576 G-U Wobble 28-XXVIII cWW cW-W 624 A.G1423 A.C1575 G-C WC 19-XIX cWW cW-W 625 A.G1424 A.C1574 G-C WC 19-XIX cWW cW-W 626 A.G1425 A.G1573 G-G -- -- t.H t.-M 627 A.G1426 A.A1572 G-A Sheared 11-XI tSH tm-M 628 A.A1427 A.A1571 A+A -- 02-II tHH tM+M 629 A.G1429 A.C1564 G-C WC 19-XIX cWW cW-W 630 A.G1430 A.U1563 G-U Wobble 28-XXVIII cWW cW-W 631 A.A1431 A.U1562 A-U WC 20-XX cWW cW-W 632 A.G1432 A.C1561 G-C WC 19-XIX cWW cW-W 633 A.A1433 A.G1560 A-G -- -- cWW cW-W 634 A.A1434 A.C1558 A+C ~rWobble 26-XXVI tWW tW+W 635 A.G1435 A.C1557 G-C WC 19-XIX cWW cW-W 636 A.G1436 A.A1515 G+A Linker -- tSS tm+m 637 A.G1436 A.C1556 G-C WC 19-XIX cWW cW-W 638 A.C1437 A.G1555 C-G WC 19-XIX cWW cW-W 639 A.U1438 A.A1553 U-A rHoogsteen 24-XXIV tWH tW-M 640 A.A1439 A.A1552 A-A -- -- tHS tM-m 641 A.U1440 A.A1551 U-A WC 20-XX cWW cW-W 642 A.G1441 A.C1550 G-C WC 19-XIX cWW cW-W 643 A.U1442 A.A1549 U-A WC 20-XX cWW cW-W 644 A.U1443 A.A1548 U-A WC 20-XX cWW cW-W 645 A.G1444 A.C1547 G-C WC 19-XIX cWW cW-W 646 A.G1445 A.U1466 G-U Wobble 28-XXVIII cWW cW-W 647 A.C1446 A.G1465 C-G WC 19-XIX cWW cW-W 648 A.C1447 A.G1464 C-G WC 19-XIX cWW cW-W 649 A.G1448 A.C1463 G-C WC 19-XIX cWW cW-W 650 A.G1449 A.C1462 G-C WC 19-XIX cWW cW-W 651 A.G1450 A.G1452 G-G -- -- cSW cm-W 652 A.G1450 A.C1461 G-C WC 19-XIX cWW cW-W 653 A.C1451 A.G1459 C-G WC 19-XIX cWW cW-W 654 A.G1455 A.C2704 G-C WC 19-XIX cWW cW-W 655 A.G1456 A.C2703 G-C WC 19-XIX cWW cW-W 656 A.U1457 A.G2702 U-G Wobble 28-XXVIII cWW cW-W 657 A.G1465 A.A1545 G+A Linker -- tSS tm+m 658 A.U1467 A.A1525 U-A WC 20-XX cWW cW-W 659 A.U1468 A.G1524 U-G -- -- cWW cW-W 660 A.A1469 A.A1522 A+A -- 02-II tHH tM+M 661 A.A1470 A.G1521 A-G Sheared 11-XI tHS tM-m 662 A.G1471 A.U1520 G-U Wobble 28-XXVIII cWW cW-W 663 A.C1472 A.G1519 C-G WC 19-XIX cWW cW-W 664 A.G1473 A.C1518 G-C WC 19-XIX cWW cW-W 665 A.U1474 A.G1517 U-G Wobble 28-XXVIII cWW cW-W 666 A.G1475 A.G1516 G-G -- -- tSH tm-M 667 A.U1476 A.A1515 U-A rHoogsteen 24-XXIV tWH tW-M 668 A.A1477 A.G1514 A-G Sheared 11-XI tHS tM-m 669 A.G1478 A.U1513 G-U -- -- cWW cW-W 670 A.G1479 A.C1512 G-C WC 19-XIX cWW cW-W 671 A.C1480 A.G1511 C-G WC 19-XIX cWW cW-W 672 A.U1481 A.G1510 U-G Wobble 28-XXVIII cWW cW-W 673 A.G1482 A.C1507 G-C WC 19-XIX cWW cW-W 674 A.G1483 A.U1506 G-U -- -- cWW cW-W 675 A.U1484 A.A1505 U-A WC 20-XX cWW cW-W 676 A.U1485 A.A1504 U-A WC 20-XX cWW cW-W 677 A.U1486 A.A1503 U-A WC 20-XX cWW cW-W 678 A.U1487 A.A1502 U-A WC 20-XX cWW cW-W 679 A.C1488 A.G1501 C-G WC 19-XIX cWW cW-W 680 A.C1489 A.G1500 C-G WC 19-XIX cWW cW-W 681 A.G1491 A.C1499 G-C WC 19-XIX cWW cW-W 682 A.G1492 A.C1498 G-C WC 19-XIX cWW cW-W 683 A.A1495 A.U1578 A-U -- -- c.S c.-m 684 A.A1496 A.C1577 A-C -- -- cWS cW-m 685 A.G1516 A.C1732 G-C WC 19-XIX cWW cW-W 686 A.C1526 A.G1546 C-G WC 19-XIX cWW cW-W 687 A.G1527 A.A1545 G-A Sheared 11-XI tSH tm-M 688 A.A1528 A.G1543 A-G Sheared 11-XI tHS tM-m 689 A.G1529 A.U1542 G-U Wobble 28-XXVIII cWW cW-W 690 A.G1530 A.C1541 G-C WC 19-XIX cWW cW-W 691 A.C1531 A.G1540 C-G WC 19-XIX cWW cW-W 692 A.A1532 A.U1539 A-U WC 20-XX cWW cW-W 693 A.C1533 A.G1538 C-G WC 19-XIX cWW cW-W 694 A.U1534 A.G1537 U+G -- -- tSW tm+W 695 A.C1565 A.G1568 C-G WC 19-XIX cWW cW-W 696 A.A1608 A.U1621 A-U rHoogsteen 24-XXIV tHW tM-W 697 A.C1611 A.G1620 C-G WC 19-XIX cWW cW-W 698 A.C1612 A.G1619 C-G WC 19-XIX cWW cW-W 699 A.G1627 A.C1639 G-C WC 19-XIX cWW cW-W 700 A.G1628 A.C1638 G-C WC 19-XIX cWW cW-W 701 A.U1629 A.C1638 U-C -- -- cWW cW-W 702 A.A1630 A.U1636 A-U ~Wobble -- cWW cW-W 703 A.G1631 A.A1635 G-A Sheared 11-XI tSH tm-M 704 A.U1648 A.A2009 U-A WC 20-XX cWW cW-W 705 A.G1649 A.C2008 G-C WC 19-XIX cWW cW-W 706 A.A1650 A.U2007 A-U WC 20-XX cWW cW-W 707 A.G1651 A.C2006 G-C WC 19-XIX cWW cW-W 708 A.A1652 A.A2005 A-A -- -- cWH cW-M 709 A.G1653 A.A2005 G-A -- -- c.W c.-W 710 A.A1655 A.A2005 A-A ~Sheared -- tHS tM-m 711 A.C1656 A.G2004 C-G WC 19-XIX cWW cW-W 712 A.U1657 A.A2003 U-A WC 20-XX cWW cW-W 713 A.C1658 A.G2002 C-G WC 19-XIX cWW cW-W 714 A.G1659 A.C2001 G-C WC 19-XIX cWW cW-W 715 A.G1660 A.C2000 G-C WC 19-XIX cWW cW-W 716 A.G1660 A.U2689 G-U -- -- -- -- 717 A.G1661 A.C1999 G-C WC 19-XIX cWW cW-W 718 A.U1662 A.A1998 U-A WC 20-XX cWW cW-W 719 A.G1663 A.C1997 G-C WC 19-XIX cWW cW-W 720 A.A1664 A.G1992 A-G -- -- cHH cM-M 721 A.A1664 A.C1996 A+C ~rWobble 26-XXVI tWW tW+W 722 A.A1665 A.U1995 A-U WC 20-XX cWW cW-W 723 A.G1666 A.C1994 G-C WC 19-XIX cWW cW-W 724 A.G1667 A.A1669 G+A -- -- cSH cm+M 725 A.G1667 A.U1993 G-U -- -- -- -- 726 A.A1668 A.A1676 A+A -- -- tWW tW+W 727 A.A1668 A.U1991 A-U rHoogsteen 24-XXIV tHW tM-W 728 A.A1669 A.U1993 A-U WC 20-XX cWW cW-W 729 A.G1674 A.A1677 G+A -- -- tSW tm+W 730 A.G1674 A.C1990 G-C WC 19-XIX cWW cW-W 731 A.U1680 A.G1763 U-G -- -- tSH tm-M 732 A.G1682 A.C1706 G-C WC 19-XIX cWW cW-W 733 A.U1683 A.A1705 U-A WC 20-XX cWW cW-W 734 A.G1684 A.C1704 G-C WC 19-XIX cWW cW-W 735 A.C1685 A.G1703 C-G WC 19-XIX cWW cW-W 736 A.C1686 A.G1702 C-G WC 19-XIX cWW cW-W 737 A.U1688 A.A1700 U-A -- -- tSH tm-M 738 A.A1689 A.A1698 A+A -- 02-II tHH tM+M 739 A.A1690 A.G1697 A-G Sheared 11-XI tHS tM-m 740 A.C1691 A.G1696 C-G WC 19-XIX cWW cW-W 741 A.U1692 A.G1695 U+G -- -- tWW tW+W 742 A.U1693 A.A1829 U-A WC 20-XX cWW cW-W 743 A.G1707 A.U1751 G-U Wobble 28-XXVIII cWW cW-W 744 A.C1708 A.G1750 C-G WC 19-XIX cWW cW-W 745 A.U1709 A.A1749 U-A WC 20-XX cWW cW-W 746 A.U1709 A.G2859 U-G -- -- cSS cm-m 747 A.G1710 A.C1748 G-C WC 19-XIX cWW cW-W 748 A.A1711 A.U1747 A-U WC 20-XX cWW cW-W 749 A.U1712 A.A1746 U-A WC 20-XX cWW cW-W 750 A.A1713 A.A1745 A+A -- -- tWW tW+W 751 A.G1715 A.U1716 G+U Platform -- cSH cm+M 752 A.U1716 A.A1744 U-A rHoogsteen 24-XXIV tWH tW-M 753 A.A1717 A.G1743 A-G Sheared 11-XI tHS tM-m 754 A.G1718 A.U1742 G-U Wobble 28-XXVIII cWW cW-W 755 A.G1719 A.C1741 G-C WC 19-XIX cWW cW-W 756 A.U1720 A.G1740 U-G Wobble 28-XXVIII cWW cW-W 757 A.G1721 A.A1739 G-A Sheared 11-XI tSH tm-M 758 A.A1722 A.G1738 A-G Sheared 11-XI tHS tM-m 759 A.G1724 A.U1736 G-U Wobble 28-XXVIII cWW cW-W 760 A.G1724 A.G1737 G-G -- -- cWS cW-m 761 A.U1725 A.A1735 U-A WC 20-XX cWW cW-W 762 A.C1726 A.G1734 C-G WC 19-XIX cWW cW-W 763 A.C1727 A.G1734 C-G -- -- cWW cW-W 764 A.C1728 A.G1731 C-G -- -- cWW cW-W 765 A.C1728 A.G1733 C-G WC 19-XIX cWW cW-W 766 A.U1729 A.G1731 U-G ~Sheared -- tHS tM-m 767 A.G1750 A.A2860 G+A Linker -- tSW tm+W 768 A.C1752 A.G1756 C-G WC 19-XIX cWW cW-W 769 A.A1754 A.C2716 A-C -- -- cWS cW-m 770 A.A1755 A.G2694 A+G -- 10-X tWS tW+m 771 A.C1764 A.G1988 C-G WC 19-XIX cWW cW-W 772 A.U1765 A.A1987 U-A WC 20-XX cWW cW-W 773 A.G1766 A.C1986 G-C WC 19-XIX cWW cW-W 774 A.G1767 A.C1985 G-C WC 19-XIX cWW cW-W 775 A.C1768 A.G1984 C-G WC 19-XIX cWW cW-W 776 A.U1769 A.G1983 U-G Wobble 28-XXVIII cWW cW-W 777 A.G1770 A.U1982 G-U Wobble 28-XXVIII cWW cW-W 778 A.C1771 A.G1980 C-G WC 19-XIX cWW cW-W 779 A.A1772 A.U1979 A-U WC 20-XX cWW cW-W 780 A.A1773 A.A1791 A-A -- -- tHW tM-W 781 A.C1774 A.C1790 C-C ~Sheared -- tHS tM-m 782 A.G1776 A.C1788 G-C WC 19-XIX cWW cW-W 783 A.U1777 A.A1787 U-A WC 20-XX cWW cW-W 784 A.A1791 A.G1828 A-G Sheared 11-XI tHS tM-m 785 A.G1792 A.U1827 G-U Wobble 28-XXVIII cWW cW-W 786 A.C1793 A.G1826 C-G WC 19-XIX cWW cW-W 787 A.A1794 A.U1825 A-U WC 20-XX cWW cW-W 788 A.C1795 A.G1824 C-G WC 19-XIX cWW cW-W 789 A.U1796 A.G1823 U-G -- -- cWW cW-W 790 A.G1797 A.C1822 G-C WC 19-XIX cWW cW-W 791 A.U1798 A.A1821 U-A WC 20-XX cWW cW-W 792 A.G1799 A.U1818 G+U -- -- tWS tW+m 793 A.C1800 A.G1817 C+G -- -- tWW tW+W 794 A.A1802 A.A1815 A+A -- 02-II tHH tM+M 795 A.A1803 A.G1814 A-G Sheared 11-XI tHS tM-m 796 A.C1804 A.G1813 C-G WC 19-XIX cWW cW-W 797 A.A1805 A.U1812 A-U WC 20-XX cWW cW-W 798 A.C1806 A.G1811 C-G WC 19-XIX cWW cW-W 799 A.G1807 A.A1810 G-A Sheared 11-XI tSH tm-M 800 A.A1829 A.U1976 A-U -- -- tHW tM-W 801 A.C1830 A.G1975 C-G WC 19-XIX cWW cW-W 802 A.G1831 A.C1974 G-C WC 19-XIX cWW cW-W 803 A.C1832 A.G1973 C-G WC 19-XIX cWW cW-W 804 A.C1833 A.G1972 C-G WC 19-XIX cWW cW-W 805 A.U1834 A.A1970 U+A -- -- cWH cW+M 806 A.G1992 A.C1996 G-C -- -- cWW cW-W 807 A.A2019 A.G2035 A-G -- -- cWW cW-W 808 A.A2020 A.U2034 A-U WC 20-XX cWW cW-W 809 A.C2023 A.G2040 C-G WC 19-XIX cWW cW-W 810 A.G2024 A.U2039 G-U Wobble 28-XXVIII cWW cW-W 811 A.C2025 A.G2038 C-G WC 19-XIX cWW cW-W 812 A.U2026 A.A2037 U-A WC 20-XX cWW cW-W 813 A.G2027 A.C2036 G-C WC 19-XIX cWW cW-W 814 A.U2028 A.A2033 U-A rHoogsteen 24-XXIV tWH tW-M 815 A.C2043 A.G2625 C-G WC 19-XIX cWW cW-W 816 A.C2044 A.G2624 C-G WC 19-XIX cWW cW-W 817 A.C2045 A.G2623 C-G WC 19-XIX cWW cW-W 818 A.G2046 A.U2622 G-U Wobble 28-XXVIII cWW cW-W 819 A.C2047 A.G2621 C-G WC 19-XIX cWW cW-W 820 A.C2047 A.A2823 C-A -- -- cSW cm-W 821 A.G2048 A.C2620 G-C WC 19-XIX cWW cW-W 822 A.G2049 A.C2619 G-C WC 19-XIX cWW cW-W 823 A.C2050 A.G2618 C-G WC 19-XIX cWW cW-W 824 A.A2051 A.A2052 A+A Platform -- cSH cm+M 825 A.A2052 A.U2617 A-U WC 20-XX cWW cW-W 826 A.G2053 A.C2616 G-C WC 19-XIX cWW cW-W 827 A.A2054 A.A2614 A-A -- -- cWW cW-W 828 A.A2054 A.U2615 A-U -- -- cWW cW-W 829 A.G2056 A.C2612 G-C WC 19-XIX cWW cW-W 830 A.G2057 A.C2611 G-C WC 19-XIX cWW cW-W 831 A.C2626 A.G2777 C-G WC 19-XIX cWW cW-W 832 A.G2627 A.A2781 G+A Linker -- tSW tm+W 833 A.G2630 A.C2788 G-C WC 19-XIX cWW cW-W 834 A.G2631 A.C2787 G-C WC 19-XIX cWW cW-W 835 A.A2632 A.U2786 A-U WC 20-XX cWW cW-W 836 A.G2633 A.C2785 G-C WC 19-XIX cWW cW-W 837 A.A2634 A.U2784 A-U WC 20-XX cWW cW-W 838 A.A2635 A.U2783 A-U WC 20-XX cWW cW-W 839 A.C2636 A.G2782 C-G WC 19-XIX cWW cW-W 840 A.U2637 A.A2776 U-A rHoogsteen 24-XXIV tWH tW-M 841 A.G2638 A.A2778 G-A -- -- tSH tm-M 842 A.A2639 A.G2775 A-G Sheared 11-XI tHS tM-m 843 A.G2640 A.C2774 G-C WC 19-XIX cWW cW-W 844 A.G2641 A.C2773 G-C WC 19-XIX cWW cW-W 845 A.G2642 A.C2772 G-C WC 19-XIX cWW cW-W 846 A.G2643 A.C2771 G-C WC 19-XIX cWW cW-W 847 A.G2644 A.G2770 G-G -- -- cWH cW-M 848 A.C2646 A.G2674 C-G WC 19-XIX cWW cW-W 849 A.U2647 A.G2673 U-G -- -- cWW cW-W 850 A.G2648 A.U2672 G-U -- -- cWW cW-W 851 A.C2649 A.G2671 C-G WC 19-XIX cWW cW-W 852 A.U2650 A.A2670 U-A WC 20-XX cWW cW-W 853 A.C2651 A.G2669 C-G WC 19-XIX cWW cW-W 854 A.C2652 A.G2668 C-G WC 19-XIX cWW cW-W 855 A.U2653 A.C2667 U-C -- -- cWW cW-W 856 A.G2655 A.U2656 G+U Platform -- cSH cm+M 857 A.U2656 A.A2665 U-A -- -- tWH tW-M 858 A.A2657 A.G2664 A-G Sheared 11-XI tHS tM-m 859 A.C2658 A.G2663 C-G WC 19-XIX cWW cW-W 860 A.G2659 A.A2662 G-A Sheared 11-XI tSH tm-M 861 A.A2675 A.G2732 A-G -- -- cWW cW-W 862 A.C2676 A.G2731 C-G WC 19-XIX cWW cW-W 863 A.G2677 A.C2730 G-C WC 19-XIX cWW cW-W 864 A.C2678 A.G2729 C-G WC 19-XIX cWW cW-W 865 A.A2679 A.U2728 A-U WC 20-XX cWW cW-W 866 A.U2680 A.A2727 U-A WC 20-XX cWW cW-W 867 A.C2681 A.A2725 C-A ~rHoogsteen 25-XXV tWH tW-M 868 A.U2684 A.A2725 U-A WC 20-XX cWW cW-W 869 A.G2685 A.U2724 G-U -- -- cWW cW-W 870 A.G2686 A.C2723 G-C WC 19-XIX cWW cW-W 871 A.U2687 A.G2722 U-G Wobble 28-XXVIII cWW cW-W 872 A.G2688 A.A2721 G-A Sheared 11-XI tSH tm-M 873 A.C2691 A.G2718 C-G WC 19-XIX cWW cW-W 874 A.G2692 A.C2717 G-C WC 19-XIX cWW cW-W 875 A.G2693 A.C2716 G-C WC 19-XIX cWW cW-W 876 A.G2694 A.C2715 G-C WC 19-XIX cWW cW-W 877 A.U2695 A.G2714 U-G Wobble 28-XXVIII cWW cW-W 878 A.U2696 A.A2711 U-A WC 20-XX cWW cW-W 879 A.G2697 A.C2710 G-C WC 19-XIX cWW cW-W 880 A.U2698 A.G2709 U-G Wobble 28-XXVIII cWW cW-W 881 A.C2699 A.G2708 C-G WC 19-XIX cWW cW-W 882 A.A2700 A.U2707 A-U WC 20-XX cWW cW-W 883 A.U2701 A.A2706 U-A WC 20-XX cWW cW-W 884 A.U2720 A.A2873 U+A Hoogsteen 23-XXIII cWH cW+M 885 A.A2734 A.G2770 A-G Sheared 11-XI tHS tM-m 886 A.G2735 A.U2769 G-U -- -- cWW cW-W 887 A.A2736 A.U2768 A-U WC 20-XX cWW cW-W 888 A.G2737 A.C2767 G-C WC 19-XIX cWW cW-W 889 A.A2738 A.A2766 A-A -- -- cWW cW-W 890 A.U2739 A.A2764 U-A -- -- tWH tW-M 891 A.A2741 A.G2763 A-G Sheared 11-XI tHS tM-m 892 A.G2742 A.C2762 G-C WC 19-XIX cWW cW-W 893 A.G2744 A.C2760 G-C WC 19-XIX cWW cW-W 894 A.C2745 A.G2759 C-G WC 19-XIX cWW cW-W 895 A.U2746 A.U2756 U-U Calcutta -- tWH tW-M 896 A.G2747 A.A2757 G-A Sheared 11-XI tSH tm-M 897 A.A2748 A.U2754 A-U rHoogsteen 24-XXIV tHW tM-W 898 A.A2749 A.A2753 A-A -- 05-V tHW tM-W 899 A.A2750 A.C2752 A+C -- -- tSH tm+M 900 A.U2756 A.A2758 U+A -- -- cWH cW+M 901 A.G2777 A.U2779 G+U -- -- cSH cm+M 902 A.C2789 A.G2894 C-G WC 19-XIX cWW cW-W 903 A.G2791 A.C2805 G-C WC 19-XIX cWW cW-W 904 A.A2792 A.U2804 A-U WC 20-XX cWW cW-W 905 A.C2793 A.G2803 C-G WC 19-XIX cWW cW-W 906 A.C2794 A.G2802 C-G WC 19-XIX cWW cW-W 907 A.C2795 A.G2801 C-G WC 19-XIX cWW cW-W 908 A.U2796 A.A2799 U-A WC 20-XX cWW cW-W 909 A.C2806 A.G2892 C-G WC 19-XIX cWW cW-W 910 A.U2807 A.U2891 U-U -- 16-XVI cWW cW-W 911 A.A2810 A.G2890 A-G Sheared 11-XI tHS tM-m 912 A.G2811 A.C2889 G-C WC 19-XIX cWW cW-W 913 A.G2812 A.C2888 G-C WC 19-XIX cWW cW-W 914 A.A2813 A.A2887 A-A -- -- cWW cW-W 915 A.C2815 A.G2831 C-G WC 19-XIX cWW cW-W 916 A.G2816 A.C2830 G-C WC 19-XIX cWW cW-W 917 A.G2816 A.A2883 G-A -- -- cSS cm-m 918 A.U2817 A.A2829 U-A WC 20-XX cWW cW-W 919 A.U2817 A.U2836 U+U -- -- tSS tm+m 920 A.U2818 A.G2828 U-G Wobble 28-XXVIII cWW cW-W 921 A.G2819 A.C2827 G-C WC 19-XIX cWW cW-W 922 A.G2834 A.A2883 G-A Sheared 11-XI tSH tm-M 923 A.U2836 A.A2879 U+A -- -- t.H t.+M 924 A.U2836 A.A2882 U-A WC 20-XX cWW cW-W 925 A.A2837 A.U2881 A-U WC 20-XX cWW cW-W 926 A.G2838 A.C2880 G-C WC 19-XIX cWW cW-W 927 A.G2839 A.U2878 G-U Wobble 28-XXVIII cWW cW-W 928 A.C2840 A.G2877 C-G WC 19-XIX cWW cW-W 929 A.C2841 A.G2876 C-G WC 19-XIX cWW cW-W 930 A.G2842 A.C2875 G-C WC 19-XIX cWW cW-W 931 A.G2843 A.C2874 G-C WC 19-XIX cWW cW-W 932 A.G2846 A.C2870 G-C WC 19-XIX cWW cW-W 933 A.U2847 A.G2869 U-G Wobble 28-XXVIII cWW cW-W 934 A.G2848 A.A2868 G-A Sheared 11-XI tSH tm-M 935 A.U2849 A.U2866 U+U -- -- tSS tm+m 936 A.A2850 A.A2868 A-A -- -- tHS tM-m 937 A.A2851 A.U2866 A+U -- -- cH. cM+. 938 A.G2852 A.U2865 G-U Wobble 28-XXVIII cWW cW-W 939 A.C2853 A.G2864 C-G WC 19-XIX cWW cW-W 940 A.G2854 A.C2863 G-C WC 19-XIX cWW cW-W 941 A.C2855 A.G2862 C-G WC 19-XIX cWW cW-W 942 A.A2856 A.U2861 A-U WC 20-XX cWW cW-W 943 A.G2857 A.A2860 G-A Sheared 11-XI tSH tm-M 944 A.A2879 A.A2882 A-A -- -- cHH cM-M **************************************************************************** List of 97 multiplets 1 nts=3 GCG A.G35,A.C445,A.G450 2 nts=3 GAU A.G48,A.A49,A.U120 3 nts=3 GCA A.G54,A.C116,A.A126 4 nts=3 GCA A.G55,A.C115,A.A127 5 nts=3 GCA A.G58,A.C69,A.A73 6 nts=3 GCG A.G60,A.C66,A.G88 7 nts=3 UAC A.U65,A.A89,A.C456 8 nts=3* UAG A.U67,A.A74,A.G88 9 nts=3 AGA A.A84,A.G98,A.A101 10 nts=3 AGA A.A182,A.G215,A.A432 11 nts=3 AGU A.A190,A.G205,A.U206 12 nts=3 AGC A.A223,A.G407,A.C420 13 nts=3 UGA A.U234,A.G263,A.A430 14 nts=3 GUA A.G242,A.U243,A.A255 15 nts=3 ACG A.A300,A.C318,A.G333 16 nts=3 GCA A.G319,A.C323,A.A1205 17 nts=3 GUA A.G372,A.U373,A.A401 18 nts=3 ACG A.A443,A.C1200,A.G1245 19 nts=3 GAA A.G446,A.A449,A.A454 20 nts=3 UAU A.U448,A.A582,A.U1258 21 nts=3 GAA A.G452,A.A457,A.A471 22 nts=3 GUA A.G458,A.U459,A.A470 23 nts=3 GUA A.G465,A.U683,A.A794 24 nts=3 AAA A.A482,A.A497,A.A507 25 nts=3 UUA A.U562,A.U2028,A.A2033 26 nts=3 ACG A.A586,A.C671,A.G809 27 nts=3 GGC A.G684,A.G775,A.C791 28 nts=3 AGG A.A699,A.G733,A.G1633 29 nts=3 UAA A.U744,A.A749,A.A753 30 nts=3 UAA A.U747,A.A1265,A.A2014 31 nts=3 GGC A.G774,A.G777,A.C787 32 nts=3 UAG A.U813,A.A1194,A.G1225 33 nts=3 AAG A.A820,A.A973,A.G1187 34 nts=3 GUA A.G859,A.U860,A.A917 35 nts=3 GUC A.G862,A.U913,A.C915 36 nts=3 GAC A.G864,A.A866,A.C912 37 nts=3 UGU A.U931,A.G1166,A.U1183 38 nts=3 AGC A.A981,A.G2027,A.C2036 39 nts=3 GAC A.G1003,A.A1010,A.C1152 40 nts=3 CCG A.C1005,A.C1135,A.G1138 41 nts=3 GUA A.G1022,A.U1023,A.A1142 42 nts=3 AGC A.A1274,A.G1296,A.C1644 43 nts=3 GCA A.G1310,A.C1604,A.A1610 44 nts=3 GUA A.G1311,A.U1313,A.A1603 45 nts=3 CAG A.C1319,A.A1322,A.G1333 46 nts=3 CCG A.C1320,A.C1323,A.G1331 47 nts=3 GAC A.G1343,A.A1384,A.C1404 48 nts=3 AAU A.A1419,A.A1495,A.U1578 49 nts=3 GAC A.G1421,A.A1496,A.C1577 50 nts=3 GGC A.G1450,A.G1452,A.C1461 51 nts=3 GGC A.G1475,A.G1516,A.C1732 52 nts=3 GAA A.G1653,A.A1655,A.A2005 53 nts=3 GCU A.G1660,A.C2000,A.U2689 54 nts=3 AGC A.A1664,A.G1992,A.C1996 55 nts=3 GAU A.G1667,A.A1669,A.U1993 56 nts=3 AAU A.A1668,A.A1676,A.U1991 57 nts=3 GAC A.G1674,A.A1677,A.C1990 58 nts=3 UAU A.U1693,A.A1829,A.U1976 59 nts=3 UAG A.U1709,A.A1749,A.G2859 60 nts=3 GUA A.G1715,A.U1716,A.A1744 61 nts=3 AGC A.A1754,A.G2693,A.C2716 62 nts=3 AGC A.A1755,A.G2694,A.C2715 63 nts=3 AAG A.A1773,A.A1791,A.G1828 64 nts=3 CGA A.C2047,A.G2621,A.A2823 65 nts=3 AAU A.A2051,A.A2052,A.U2617 66 nts=3 AAU A.A2054,A.A2614,A.U2615 67 nts=3 CGU A.C2626,A.G2777,A.U2779 68 nts=3 GUA A.G2655,A.U2656,A.A2665 69 nts=3 CUA A.C2681,A.U2684,A.A2725 70 nts=3* UUA A.U2746,A.U2756,A.A2758 71 nts=3 UAU A.U2849,A.A2851,A.U2866 72 nts=4 UACG A.U12,A.A526,A.C2043,A.G2625 73 nts=4 GACG A.G26,A.A514,A.C581,A.G1259 74 nts=4 CGAA A.C79,A.G107,A.A345,A.A346 75 nts=4 GCAA A.G80,A.C106,A.A294,A.A344 76 nts=4 AGCA A.A83,A.G85,A.C97,A.A103 77 nts=4 CGAU A.C183,A.G214,A.A216,A.U431 78 nts=4 GCGA A.G194,A.C201,A.G247,A.A251 79 nts=4 CGAG A.C237,A.G260,A.A608,A.G619 80 nts=4 CGUA A.C238,A.G259,A.U607,A.A621 81 nts=4 CAUA A.C475,A.A479,A.U499,A.A503 82 nts=4 GAGA A.G476,A.A480,A.G500,A.A505 83 nts=4 GCGA A.G585,A.C672,A.G808,A.A1254 84 nts=4 AUGC A.A685,A.U688,A.G777,A.C787 85 nts=4 AUGC A.A685,A.U688,A.G778,A.C786 86 nts=4 AUAU A.A693,A.U769,A.A1353,A.U1379 87 nts=4 CGGA A.C812,A.G1195,A.G1223,A.A1226 88 nts=4 ACGU A.A819,A.C837,A.G942,A.U1188 89 nts=4 UGGA A.U1012,A.G1025,A.G1139,A.A1143 90 nts=4 CGUA A.C1314,A.G1338,A.U1391,A.A1393 91 nts=4 GCAU A.G1324,A.C1330,A.A1616,A.U1647 92 nts=4 CGGA A.C1362,A.G1369,A.G1807,A.A1810 93 nts=4 GUAC A.G1436,A.U1476,A.A1515,A.C1556 94 nts=4 CGGA A.C1446,A.G1465,A.G1527,A.A1545 95 nts=4 CGGA A.C1708,A.G1750,A.G2857,A.A2860 96 nts=4 GCGA A.G2816,A.C2830,A.G2834,A.A2883 97 nts=5 UAUAA A.U2817,A.A2829,A.U2836,A.A2879,A.A2882 **************************************************************************** List of 62 helices Note: a helix is defined by base-stacking interactions, regardless of bp type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=8 strand-1 5'-GGUUAAGC-3' bp-type |||||||| strand-2 3'-CCAAUUCG-5' helix-form AAAAAAA 1 A.G1 A.C2902 G-C WC 19-XIX cWW cW-W 2 A.G2 A.C2901 G-C WC 19-XIX cWW cW-W 3 A.U3 A.A2900 U-A WC 20-XX cWW cW-W 4 A.U4 A.A2899 U-A WC 20-XX cWW cW-W 5 A.A5 A.U2898 A-U WC 20-XX cWW cW-W 6 A.A6 A.U2897 A-U WC 20-XX cWW cW-W 7 A.G7 A.C2896 G-C WC 19-XIX cWW cW-W 8 A.C8 A.G2895 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#2[5] bps=41 strand-1 5'-UAGCGUACACGGGGAUGCCAGGCAGUCAAGACCGGGGGAAC-3' bp-type ..||||||||.|....||..||||||||||.||||||.... strand-2 3'-AAUGCAUGUGCCAAGUCGAACCGUCAGUUCGGGCCCCAUAA-5' helix-form xxAAAAAAA..x....xxxx.xAA.AAx.x.xAAA...x. 1 A.U12 A.A526 U-A rHoogsteen 24-XXIV tWH tW-M 2 A.A13 A.A14 A+A Platform -- cSH cm+M 3 A.G15 A.U525 G-U Wobble 28-XXVIII cWW cW-W 4 A.C16 A.G524 C-G WC 19-XIX cWW cW-W 5 A.G17 A.C523 G-C WC 19-XIX cWW cW-W 6 A.U18 A.A522 U-A WC 20-XX cWW cW-W 7 A.A19 A.U521 A-U WC 20-XX cWW cW-W 8 A.C20 A.G520 C-G WC 19-XIX cWW cW-W 9 A.A21 A.U519 A-U WC 20-XX cWW cW-W 10 A.C22 A.G518 C-G WC 19-XIX cWW cW-W 11 A.G23 A.C517 G-C -- -- cWW cW-W 12 A.G24 A.C516 G-C WC 19-XIX cWW cW-W 13 A.G26 A.A514 G-A Sheared 11-XI tSH tm-M 14 A.G27 A.A513 G-A Sheared 11-XI tSH tm-M 15 A.A28 A.G512 A-G Sheared 11-XI tHS tM-m 16 A.U29 A.U511 U-U -- -- cWW cW-W 17 A.G30 A.C510 G-C WC 19-XIX cWW cW-W 18 A.C32 A.G474 C-G WC 19-XIX cWW cW-W 19 A.C33 A.A447 C-A ~rHoogsteen 25-XXV tWH tW-M 20 A.A454 A.A449 A-A -- 05-V tHW tM-W 21 A.G35 A.C445 G-C WC 19-XIX cWW cW-W 22 A.G36 A.C444 G-C WC 19-XIX cWW cW-W 23 A.C37 A.G442 C-G WC 19-XIX cWW cW-W 24 A.A38 A.U441 A-U WC 20-XX cWW cW-W 25 A.G39 A.C440 G-C WC 19-XIX cWW cW-W 26 A.U40 A.A439 U-A WC 20-XX cWW cW-W 27 A.C41 A.G438 C-G WC 19-XIX cWW cW-W 28 A.A42 A.U437 A-U WC 20-XX cWW cW-W 29 A.A44 A.U434 A-U WC 20-XX cWW cW-W 30 A.G45 A.C433 G-C WC 19-XIX cWW cW-W 31 A.A182 A.G215 A-G Imino 08-VIII cWW cW-W 32 A.C183 A.G214 C-G WC 19-XIX cWW cW-W 33 A.C184 A.G212 C-G WC 19-XIX cWW cW-W 34 A.G185 A.C211 G-C WC 19-XIX cWW cW-W 35 A.G186 A.C210 G-C WC 19-XIX cWW cW-W 36 A.G187 A.C209 G-C WC 19-XIX cWW cW-W 37 A.G188 A.C208 G-C WC 19-XIX cWW cW-W 38 A.G189 A.A207 G-A -- -- tSH tm-M 39 A.A190 A.U206 A-U rHoogsteen 24-XXIV tHW tM-W 40 A.A191 A.A204 A+A -- 02-II tHH tM+M 41 A.C192 A.A203 C-A ~Sheared -- tHS tM-m -------------------------------------------------------------------------- helix#3[1] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G46 A.C179 G-C WC 19-XIX cWW cW-W 2 A.C47 A.G178 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#4[3] bps=15 strand-1 5'-AGAAGGACGUAGAUA-3' bp-type ....|||||..|||. strand-2 3'-UAAGCCUGCGUCUAA-5' helix-form x.x.AAx.Axx... 1 A.A49 A.U120 A+U Hoogsteen 23-XXIII cHW cM+W 2 A.G51 A.A118 G-A Sheared 11-XI tSH tm-M 3 A.A52 A.A119 A+A -- -- tHH tM+M 4 A.A53 A.G117 A-G Sheared 11-XI tHS tM-m 5 A.G54 A.C116 G-C WC 19-XIX cWW cW-W 6 A.G55 A.C115 G-C WC 19-XIX cWW cW-W 7 A.A56 A.U114 A-U WC 20-XX cWW cW-W 8 A.C57 A.G70 C-G WC 19-XIX cWW cW-W 9 A.G58 A.C69 G-C WC 19-XIX cWW cW-W 10 A.U59 A.G68 U-G -- -- cWW cW-W 11 A.A74 A.U67 A+U -- -- cHW cM+W 12 A.G88 A.C66 G-C WC 19-XIX cWW cW-W 13 A.A89 A.U65 A-U WC 20-XX cWW cW-W 14 A.U90 A.A64 U-A WC 20-XX cWW cW-W 15 A.A91 A.A63 A+A -- 01-I tWW tW+W -------------------------------------------------------------------------- helix#5[3] bps=13 strand-1 5'-GCGUCGGUAAGGU-3' bp-type .||.||||..||| strand-2 3'-AGCGGCCAAACCA-5' helix-form .AAAAA..xxA. 1 A.G75 A.A111 G-A Imino 08-VIII cWW cW-W 2 A.C76 A.G110 C-G WC 19-XIX cWW cW-W 3 A.G77 A.C109 G-C WC 19-XIX cWW cW-W 4 A.U78 A.G108 U-G -- -- cWW cW-W 5 A.C79 A.G107 C-G WC 19-XIX cWW cW-W 6 A.G80 A.C106 G-C WC 19-XIX cWW cW-W 7 A.G81 A.C105 G-C WC 19-XIX cWW cW-W 8 A.U82 A.A104 U-A WC 20-XX cWW cW-W 9 A.A83 A.A103 A-A ~Sheared -- tSH tm-M 10 A.A84 A.A101 A-A -- -- tHW tM-W 11 A.G85 A.C97 G-C WC 19-XIX cWW cW-W 12 A.G86 A.C96 G-C WC 19-XIX cWW cW-W 13 A.U87 A.A95 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#6[2] bps=10 strand-1 5'-CCCAGUGUGU-3' bp-type |||||||||| strand-2 3'-GGGUCACACA-5' helix-form .AxAAAAAA 1 A.C128 A.G123 C-G WC 19-XIX cWW cW-W 2 A.C129 A.G122 C-G WC 19-XIX cWW cW-W 3 A.C130 A.G121 C-G WC 19-XIX cWW cW-W 4 A.A131 A.U148 A-U WC 20-XX cWW cW-W 5 A.G132 A.C147 G-C WC 19-XIX cWW cW-W 6 A.U133 A.A146 U-A WC 20-XX cWW cW-W 7 A.G134 A.C145 G-C WC 19-XIX cWW cW-W 8 A.U135 A.A144 U-A WC 20-XX cWW cW-W 9 A.G136 A.C143 G-C WC 19-XIX cWW cW-W 10 A.U137 A.A142 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#7[1] bps=11 strand-1 5'-UCAUUAACUGA-3' bp-type |||||||||.. strand-2 3'-AGUAAUUGGAU-5' helix-form .AAAAAA... 1 A.U150 A.A176 U-A WC 20-XX cWW cW-W 2 A.C151 A.G175 C-G WC 19-XIX cWW cW-W 3 A.A152 A.U174 A-U WC 20-XX cWW cW-W 4 A.U153 A.A173 U-A WC 20-XX cWW cW-W 5 A.U154 A.A172 U-A WC 20-XX cWW cW-W 6 A.A155 A.U171 A-U WC 20-XX cWW cW-W 7 A.A156 A.U170 A-U WC 20-XX cWW cW-W 8 A.C157 A.G169 C-G WC 19-XIX cWW cW-W 9 A.U158 A.G168 U-G Wobble 28-XXVIII cWW cW-W 10 A.G159 A.A167 G-A Sheared 11-XI tSH tm-M 11 A.A160 A.U166 A-U rHoogsteen 24-XXIV tHW tM-W -------------------------------------------------------------------------- helix#8[1] bps=6 strand-1 5'-GAGCCC-3' bp-type ..|||| strand-2 3'-AUCGGG-5' helix-form .x.Ax 1 A.G220 A.A428 G-A -- -- tWH tW-M 2 A.A221 A.U427 A-U rHoogsteen 24-XXIV tHW tM-W 3 A.G266 A.C426 G-C WC 19-XIX cWW cW-W 4 A.C267 A.G425 C-G WC 19-XIX cWW cW-W 5 A.C268 A.G424 C-G WC 19-XIX cWW cW-W 6 A.C269 A.G370 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#9[1] bps=4 strand-1 5'-AUCA-3' bp-type .||. strand-2 3'-GAGC-5' helix-form xA. 1 A.A222 A.G232 A-G Sheared 11-XI tHS tM-m 2 A.U224 A.A231 U-A WC 20-XX cWW cW-W 3 A.C225 A.G230 C-G WC 19-XIX cWW cW-W 4 A.A226 A.C229 A-C -- -- tS. tm-. -------------------------------------------------------------------------- helix#10[2] bps=14 strand-1 5'-AUUCCCCCAUAGCG-3' bp-type ..|||||....||. strand-2 3'-AAAGGGGCAGGCGA-5' helix-form .xAAAA..xx.A. 1 A.A233 A.A429 A+A -- -- tWW tW+W 2 A.U234 A.A430 U+A rWC 21-XXI tWW tW+W 3 A.U235 A.A262 U-A WC 20-XX cWW cW-W 4 A.C236 A.G261 C-G WC 19-XIX cWW cW-W 5 A.C237 A.G260 C-G WC 19-XIX cWW cW-W 6 A.C238 A.G259 C-G WC 19-XIX cWW cW-W 7 A.C239 A.G258 C-G WC 19-XIX cWW cW-W 8 A.C240 A.C257 C-C -- -- tWW tW-W 9 A.A241 A.A256 A+A -- 02-II tHH tM+M 10 A.U243 A.G242 U+G Platform -- cHS cM+m 11 A.A244 A.G254 A-G Sheared 11-XI tHS tM-m 12 A.G245 A.C253 G-C WC 19-XIX cWW cW-W 13 A.C246 A.G252 C-G WC 19-XIX cWW cW-W 14 A.G247 A.A251 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#11[6] bps=30 strand-1 5'-GAGCCAGCAGUGAUGUGUAAGUGGAAGGGU-3' bp-type ||||...||||||||.||..|||...|||. strand-2 3'-CUCGAUAGUCGUUACGUAAACACAUGCCCA-5' helix-form .AA.xxx....xx.A..xx..A.xxxAAx 1 A.G271 A.C366 G-C WC 19-XIX cWW cW-W 2 A.A272 A.U365 A-U WC 20-XX cWW cW-W 3 A.G273 A.C364 G-C WC 19-XIX cWW cW-W 4 A.C274 A.G363 C-G WC 19-XIX cWW cW-W 5 A.C275 A.A362 C-A -- -- tWH tW-M 6 A.A278 A.U276 A+U -- -- cHS cM+m 7 A.G361 A.A279 G-A Sheared 11-XI tSH tm-M 8 A.C281 A.G359 C-G WC 19-XIX cWW cW-W 9 A.A282 A.U358 A-U WC 20-XX cWW cW-W 10 A.G283 A.C357 G-C WC 19-XIX cWW cW-W 11 A.U284 A.G356 U-G Wobble 28-XXVIII cWW cW-W 12 A.G285 A.U355 G-U Wobble 28-XXVIII cWW cW-W 13 A.U286 A.A354 U-A WC 20-XX cWW cW-W 14 A.U288 A.A352 U-A WC 20-XX cWW cW-W 15 A.G289 A.C351 G-C WC 19-XIX cWW cW-W 16 A.U290 A.G350 U-G -- -- cWW cW-W 17 A.G291 A.U349 G-U Wobble 28-XXVIII cWW cW-W 18 A.U292 A.A348 U-A WC 20-XX cWW cW-W 19 A.A346 A.A345 A+A Platform -- cHS cM+m 20 A.A294 A.A344 A-A -- -- tHW tM-W 21 A.G295 A.C343 G-C WC 19-XIX cWW cW-W 22 A.U296 A.A342 U-A WC 20-XX cWW cW-W 23 A.G297 A.C341 G-C WC 19-XIX cWW cW-W 24 A.G298 A.A340 G-A Sheared 11-XI tSH tm-M 25 A.A322 A.U339 A-U -- -- cSW cm-W 26 A.A299 A.G338 A-G -- -- tHW tM-W 27 A.G325 A.C337 G-C WC 19-XIX cWW cW-W 28 A.G326 A.C336 G-C WC 19-XIX cWW cW-W 29 A.G327 A.C335 G-C WC 19-XIX cWW cW-W 30 A.U328 A.A332 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#12[2] bps=13 strand-1 5'-CGCGCGUCUGGAA-3' bp-type ||||||.|..... strand-2 3'-GCGCGCGGAAAGC-5' helix-form xAx.AAAxxxx. 1 A.C323 A.G319 C-G WC 19-XIX cWW cW-W 2 A.G333 A.C318 G-C WC 19-XIX cWW cW-W 3 A.C334 A.G317 C-G WC 19-XIX cWW cW-W 4 A.G301 A.C316 G-C WC 19-XIX cWW cW-W 5 A.C302 A.G315 C-G WC 19-XIX cWW cW-W 6 A.G303 A.C314 G-C WC 19-XIX cWW cW-W 7 A.U304 A.G313 U-G -- -- cWW cW-W 8 A.C305 A.G312 C-G WC 19-XIX cWW cW-W 9 A.U306 A.A310 U-A rHoogsteen 24-XXIV tWH tW-M 10 A.G307 A.A330 G+A -- 10-X tSW tm+W 11 A.G308 A.A477 G-A Sheared 11-XI tSH tm-M 12 A.A480 A.G476 A-G Sheared 11-XI tHS tM-m 13 A.A479 A.C475 A-C -- -- tHW tM-W -------------------------------------------------------------------------- helix#13[2] bps=10 strand-1 5'-AUAGGCGGAC-3' bp-type ...||||||. strand-2 3'-AAGUCGCCUA-5' helix-form x...xx... 1 A.A371 A.A402 A+A -- 02-II tHH tM+M 2 A.U373 A.A401 U-A -- -- tWH tW-M 3 A.A374 A.G400 A-G Sheared 11-XI tHS tM-m 4 A.G375 A.U399 G-U Wobble 28-XXVIII cWW cW-W 5 A.G376 A.C398 G-C WC 19-XIX cWW cW-W 6 A.C378 A.G396 C-G WC 19-XIX cWW cW-W 7 A.G380 A.C394 G-C WC 19-XIX cWW cW-W 8 A.G381 A.C393 G-C WC 19-XIX cWW cW-W 9 A.A382 A.U392 A-U WC 20-XX cWW cW-W 10 A.C383 A.A391 C-A -- -- cW. cW-. -------------------------------------------------------------------------- helix#14[2] bps=5 strand-1 5'-GGGGG-3' bp-type ||.|| strand-2 3'-CCUCC-5' helix-form A.AA 1 A.G406 A.C421 G-C WC 19-XIX cWW cW-W 2 A.G407 A.C420 G-C WC 19-XIX cWW cW-W 3 A.G408 A.U419 G-U -- -- cWW cW-W 4 A.G409 A.C418 G-C WC 19-XIX cWW cW-W 5 A.G410 A.C417 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#15[1] bps=6 strand-1 5'-AUACCG-3' bp-type ...||. strand-2 3'-AAGGGA-5' helix-form x..A. 1 A.A457 A.A471 A+A -- 02-II tHH tM+M 2 A.U459 A.A470 U-A rHoogsteen 24-XXIV tWH tW-M 3 A.A460 A.G469 A-G Sheared 11-XI tHS tM-m 4 A.C461 A.G468 C-G WC 19-XIX cWW cW-W 5 A.C462 A.G467 C-G WC 19-XIX cWW cW-W 6 A.G463 A.A466 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#16[1] bps=9 strand-1 5'-AGGGGAGUG-3' bp-type .||||.... strand-2 3'-GCCCCAGAA-5' helix-form ...Axxxx 1 A.A492 A.G488 A-G Sheared 11-XI tHS tM-m 2 A.G493 A.C487 G-C WC 19-XIX cWW cW-W 3 A.G494 A.C486 G-C WC 19-XIX cWW cW-W 4 A.G495 A.C485 G-C WC 19-XIX cWW cW-W 5 A.G496 A.C484 G-C WC 19-XIX cWW cW-W 6 A.A497 A.A482 A-A -- -- cWS cW-m 7 A.G498 A.G506 G-G -- -- cW. cW-. 8 A.U499 A.A503 U-A rHoogsteen 24-XXIV tWH tW-M 9 A.G500 A.A505 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#17[1] bps=6 strand-1 5'-ACGCUG-3' bp-type .||||| strand-2 3'-UGUGAC-5' helix-form x..A. 1 A.A529 A.U2041 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.C2023 A.G2040 C-G WC 19-XIX cWW cW-W 3 A.G2024 A.U2039 G-U Wobble 28-XXVIII cWW cW-W 4 A.C2025 A.G2038 C-G WC 19-XIX cWW cW-W 5 A.U2026 A.A2037 U-A WC 20-XX cWW cW-W 6 A.G2027 A.C2036 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#18[2] bps=11 strand-1 5'-GUGGGAGCACG-3' bp-type |.||..||||| strand-2 3'-CGUCAGUGUGC-5' helix-form ......AAAA 1 A.G533 A.C560 G-C WC 19-XIX cWW cW-W 2 A.U534 A.G559 U-G -- -- cWW cW-W 3 A.G535 A.U558 G-U Wobble 28-XXVIII cWW cW-W 4 A.G536 A.C557 G-C WC 19-XIX cWW cW-W 5 A.G537 A.A556 G-A Sheared 11-XI tSH tm-M 6 A.A538 A.G555 A-G -- -- tHS tM-m 7 A.G539 A.U554 G-U Wobble 28-XXVIII cWW cW-W 8 A.C540 A.G553 C-G WC 19-XIX cWW cW-W 9 A.A541 A.U552 A-U WC 20-XX cWW cW-W 10 A.C542 A.G551 C-G WC 19-XIX cWW cW-W 11 A.G543 A.C550 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#19[0] bps=7 strand-1 5'-AUGGGAA-3' bp-type |.|.|.| strand-2 3'-UCCACGU-5' helix-form .A.xx. 1 A.A575 A.U566 A-U WC 20-XX cWW cW-W 2 A.U576 A.C565 U-C -- -- cWW cW-W 3 A.G577 A.C564 G-C WC 19-XIX cWW cW-W 4 A.G578 A.A563 G-A Imino 08-VIII cWW cW-W 5 A.G2018 A.C531 G-C WC 19-XIX cWW cW-W 6 A.A2019 A.G2035 A-G -- -- cWW cW-W 7 A.A2020 A.U2034 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#20[3] bps=19 strand-1 5'-CCCCGAAACCCGGUGGGUG-3' bp-type .||.|...|||||||||.. strand-2 3'-UGGUCUAAGGGCCACCCGA-5' helix-form xAAAx.x.AAAAAxxA.x 1 A.C587 A.U810 C+U -- -- cHW cM+W 2 A.C671 A.G809 C-G WC 19-XIX cWW cW-W 3 A.C672 A.G808 C-G WC 19-XIX cWW cW-W 4 A.C673 A.U807 C-U -- -- cWW cW-W 5 A.G674 A.C806 G-C WC 19-XIX cWW cW-W 6 A.A675 A.U803 A-U rHoogsteen 24-XXIV tHW tM-W 7 A.A676 A.A802 A-A -- 05-V tHW tM-W 8 A.A677 A.A800 A+A -- 01-I tWW tW+W 9 A.C678 A.G799 C-G WC 19-XIX cWW cW-W 10 A.C679 A.G798 C-G WC 19-XIX cWW cW-W 11 A.C680 A.G797 C-G WC 19-XIX cWW cW-W 12 A.G681 A.C796 G-C WC 19-XIX cWW cW-W 13 A.G682 A.C795 G-C WC 19-XIX cWW cW-W 14 A.U683 A.A794 U-A WC 20-XX cWW cW-W 15 A.G775 A.C791 G-C WC 19-XIX cWW cW-W 16 A.G777 A.C787 G-C WC 19-XIX cWW cW-W 17 A.G778 A.C786 G-C WC 19-XIX cWW cW-W 18 A.U779 A.G785 U-G -- -- cWW cW-W 19 A.G780 A.A783 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#21[1] bps=14 strand-1 5'-UUAUAUUCUGUAGC-3' bp-type .||||||||||||| strand-2 3'-AAUAUGGGACGUUG-5' helix-form xAAA..AAAAAAA 1 A.U588 A.A670 U+A -- -- tWS tW+m 2 A.U589 A.A668 U-A WC 20-XX cWW cW-W 3 A.A590 A.U667 A-U WC 20-XX cWW cW-W 4 A.U591 A.A666 U-A WC 20-XX cWW cW-W 5 A.A592 A.U665 A-U WC 20-XX cWW cW-W 6 A.U593 A.G664 U-G Wobble 28-XXVIII cWW cW-W 7 A.U594 A.G663 U-G Wobble 28-XXVIII cWW cW-W 8 A.C595 A.G662 C-G WC 19-XIX cWW cW-W 9 A.U596 A.A661 U-A WC 20-XX cWW cW-W 10 A.G597 A.C660 G-C WC 19-XIX cWW cW-W 11 A.U598 A.G659 U-G Wobble 28-XXVIII cWW cW-W 12 A.A599 A.U658 A-U WC 20-XX cWW cW-W 13 A.G600 A.U657 G-U Wobble 28-XXVIII cWW cW-W 14 A.C601 A.G656 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#22[2] bps=9 strand-1 5'-AGGUUACCG-3' bp-type .||...||. strand-2 3'-GCCGAGGGA-5' helix-form ....x.A. 1 A.A603 A.G625 A+G Linker -- tWS tW+m 2 A.G604 A.C624 G-C WC 19-XIX cWW cW-W 3 A.G605 A.C623 G-C WC 19-XIX cWW cW-W 4 A.U606 A.G622 U-G -- -- cWW cW-W 5 A.U607 A.A621 U-A -- -- tWH tW-M 6 A.A609 A.G619 A-G -- -- tHS tM-m 7 A.C610 A.G618 C-G WC 19-XIX cWW cW-W 8 A.C611 A.G617 C-G WC 19-XIX cWW cW-W 9 A.G612 A.A616 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#23[1] bps=3 strand-1 5'-GGG-3' bp-type ||. strand-2 3'-CCA-5' helix-form A. 1 A.G628 A.C635 G-C WC 19-XIX cWW cW-W 2 A.G629 A.C634 G-C WC 19-XIX cWW cW-W 3 A.G630 A.A633 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#24[1] bps=5 strand-1 5'-AGUCU-3' bp-type .|||| strand-2 3'-GCGGG-5' helix-form ...A 1 A.A637 A.G651 A+G Linker -- tSS tm+m 2 A.G638 A.C650 G-C WC 19-XIX cWW cW-W 3 A.U639 A.G649 U-G Wobble 28-XXVIII cWW cW-W 4 A.C640 A.G648 C-G WC 19-XIX cWW cW-W 5 A.U641 A.G647 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#25[2] bps=12 strand-1 5'-CUAGCCAUGGGC-3' bp-type ..||||||.||| strand-2 3'-AAUCGGUGUUCG-5' helix-form xxAAAA...Ax 1 A.C687 A.A1780 C-A -- -- cSW cm-W 2 A.U688 A.A685 U+A -- -- tWS tW+m 3 A.A689 A.U773 A-U WC 20-XX cWW cW-W 4 A.G690 A.C772 G-C WC 19-XIX cWW cW-W 5 A.C691 A.G771 C-G WC 19-XIX cWW cW-W 6 A.C692 A.G770 C-G WC 19-XIX cWW cW-W 7 A.A693 A.U769 A-U WC 20-XX cWW cW-W 8 A.U694 A.G768 U-G Wobble 28-XXVIII cWW cW-W 9 A.G695 A.U767 G-U -- -- cWW cW-W 10 A.G696 A.U766 G-U Wobble 28-XXVIII cWW cW-W 11 A.G697 A.C765 G-C WC 19-XIX cWW cW-W 12 A.C698 A.G763 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#26[4] bps=24 strand-1 5'-CACUAACUGGAGACCGCCCUAAUG-3' bp-type ..||||||....|||.|||||||. strand-2 3'-UGGGUUGGAAGUUGGAGGGAUUAA-5' helix-form ...AAAA....xAA.xAxAAA.x 1 A.C717 A.U714 C-U -- -- tHS tM-m 2 A.A718 A.G713 A-G -- -- tHS tM-m 3 A.C719 A.G712 C-G WC 19-XIX cWW cW-W 4 A.U720 A.G711 U-G Wobble 28-XXVIII cWW cW-W 5 A.A721 A.U710 A-U WC 20-XX cWW cW-W 6 A.A722 A.U709 A-U WC 20-XX cWW cW-W 7 A.C723 A.G708 C-G WC 19-XIX cWW cW-W 8 A.U724 A.G707 U-G Wobble 28-XXVIII cWW cW-W 9 A.G725 A.A706 G-A Sheared 11-XI tSH tm-M 10 A.G726 A.A705 G-A Sheared 11-XI tSH tm-M 11 A.A727 A.G704 A-G Sheared 11-XI tHS tM-m 12 A.G728 A.U703 G-U -- -- cWW cW-W 13 A.A730 A.U702 A-U WC 20-XX cWW cW-W 14 A.C731 A.G701 C-G WC 19-XIX cWW cW-W 15 A.C732 A.G700 C-G WC 19-XIX cWW cW-W 16 A.G733 A.A699 G-A Sheared 11-XI tSH tm-M 17 A.C736 A.G760 C-G WC 19-XIX cWW cW-W 18 A.C737 A.G759 C-G WC 19-XIX cWW cW-W 19 A.C740 A.G757 C-G WC 19-XIX cWW cW-W 20 A.U741 A.A756 U-A WC 20-XX cWW cW-W 21 A.A742 A.U755 A-U WC 20-XX cWW cW-W 22 A.A743 A.U754 A-U WC 20-XX cWW cW-W 23 A.U744 A.A753 U-A WC 20-XX cWW cW-W 24 A.G745 A.A750 G+A -- -- tSW tm+W -------------------------------------------------------------------------- helix#27[5] bps=31 strand-1 5'-GUAGCCCUCGUGAUCAUCUCCGGGGUAGAGC-3' bp-type |||||||||||||||||||||||....|||. strand-2 3'-UAUCGGGGGCACUAGUAGAGGCCAUAGCUCA-5' helix-form ..AAxxAAAAAAxxAAx.AAA...x..x.x 1 A.G831 A.U826 G-U Wobble 28-XXVIII cWW cW-W 2 A.U832 A.A825 U-A WC 20-XX cWW cW-W 3 A.A833 A.U824 A-U WC 20-XX cWW cW-W 4 A.G834 A.C823 G-C WC 19-XIX cWW cW-W 5 A.C835 A.G822 C-G WC 19-XIX cWW cW-W 6 A.C837 A.G942 C-G WC 19-XIX cWW cW-W 7 A.C838 A.G940 C-G WC 19-XIX cWW cW-W 8 A.U839 A.G939 U-G Wobble 28-XXVIII cWW cW-W 9 A.C840 A.G938 C-G WC 19-XIX cWW cW-W 10 A.G841 A.C937 G-C WC 19-XIX cWW cW-W 11 A.U842 A.A936 U-A WC 20-XX cWW cW-W 12 A.G843 A.C935 G-C WC 19-XIX cWW cW-W 13 A.A844 A.U934 A-U WC 20-XX cWW cW-W 14 A.U847 A.A933 U-A WC 20-XX cWW cW-W 15 A.C848 A.G930 C-G WC 19-XIX cWW cW-W 16 A.A849 A.U929 A-U WC 20-XX cWW cW-W 17 A.U850 A.A928 U-A WC 20-XX cWW cW-W 18 A.C851 A.G926 C-G WC 19-XIX cWW cW-W 19 A.U852 A.A925 U-A WC 20-XX cWW cW-W 20 A.C853 A.G924 C-G WC 19-XIX cWW cW-W 21 A.C854 A.G923 C-G WC 19-XIX cWW cW-W 22 A.G855 A.C922 G-C WC 19-XIX cWW cW-W 23 A.G856 A.C921 G-C WC 19-XIX cWW cW-W 24 A.G857 A.A920 G-A Imino 08-VIII cWW cW-W 25 A.G858 A.U919 G-U -- -- cWW cW-W 26 A.U860 A.A917 U-A rHoogsteen 24-XXIV tWH tW-M 27 A.A861 A.G916 A-G Sheared 11-XI tHS tM-m 28 A.G862 A.C915 G-C WC 19-XIX cWW cW-W 29 A.A863 A.U913 A-U WC 20-XX cWW cW-W 30 A.G864 A.C912 G-C WC 19-XIX cWW cW-W 31 A.C865 A.A909 C-A ~rHoogsteen 25-XXV tWH tW-M -------------------------------------------------------------------------- helix#28[6] bps=32 strand-1 5'-AGUCCGUCGUGAAUAGGGGAGCGUUCUGAGCC-3' bp-type .|.|||.||||....|||||||||||||.||| strand-2 3'-GUGGGCGGCACAGAGCCCCUCGUAAGACUUGG-5' helix-form x.AAAAAAAAxxx..A.AA.x.x.AA.xx.A 1 A.A960 A.G956 A-G Sheared 11-XI tHS tM-m 2 A.G962 A.U955 G-U Wobble 28-XXVIII cWW cW-W 3 A.U963 A.G954 U-G -- -- cWW cW-W 4 A.C964 A.G953 C-G WC 19-XIX cWW cW-W 5 A.C965 A.G952 C-G WC 19-XIX cWW cW-W 6 A.G966 A.C951 G-C WC 19-XIX cWW cW-W 7 A.U967 A.G950 U-G -- -- cWW cW-W 8 A.C968 A.G949 C-G WC 19-XIX cWW cW-W 9 A.G969 A.C948 G-C WC 19-XIX cWW cW-W 10 A.U970 A.A947 U-A WC 20-XX cWW cW-W 11 A.G971 A.C946 G-C WC 19-XIX cWW cW-W 12 A.A972 A.A821 A-A ~Sheared -- tSH tm-M 13 A.A973 A.G1187 A-G -- -- cSS cm-m 14 A.U1188 A.A819 U-A rHoogsteen 24-XXIV tWH tW-M 15 A.A1189 A.G818 A-G Sheared 11-XI tHS tM-m 16 A.G1190 A.C817 G-C WC 19-XIX cWW cW-W 17 A.G1191 A.C816 G-C WC 19-XIX cWW cW-W 18 A.G1192 A.C815 G-C WC 19-XIX cWW cW-W 19 A.G1193 A.C814 G-C WC 19-XIX cWW cW-W 20 A.A1194 A.U813 A-U WC 20-XX cWW cW-W 21 A.G1195 A.C812 G-C WC 19-XIX cWW cW-W 22 A.C1196 A.G1250 C-G WC 19-XIX cWW cW-W 23 A.G1197 A.U1249 G-U Wobble 28-XXVIII cWW cW-W 24 A.U1198 A.A1247 U-A WC 20-XX cWW cW-W 25 A.U1199 A.A1246 U-A WC 20-XX cWW cW-W 26 A.C1200 A.G1245 C-G WC 19-XIX cWW cW-W 27 A.U1201 A.A1244 U-A WC 20-XX cWW cW-W 28 A.G1202 A.C1243 G-C WC 19-XIX cWW cW-W 29 A.A1204 A.U1242 A+U -- -- cH. cM+. 30 A.G1206 A.U1240 G-U Wobble 28-XXVIII cWW cW-W 31 A.C1207 A.G1239 C-G WC 19-XIX cWW cW-W 32 A.C1208 A.G1238 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#29[1] bps=5 strand-1 5'-GAGGG-3' bp-type ..||| strand-2 3'-AACCC-5' helix-form x.AA 1 A.G974 A.A990 G+A -- -- tHH tM+M 2 A.A975 A.A988 A-A -- -- tHS tM-m 3 A.G976 A.C987 G-C WC 19-XIX cWW cW-W 4 A.G977 A.C986 G-C WC 19-XIX cWW cW-W 5 A.G978 A.C985 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#30[1] bps=5 strand-1 5'-AGGGA-3' bp-type .|||. strand-2 3'-ACCCU-5' helix-form xAAx 1 A.A1009 A.A1008 A+A Platform -- cHS cM+m 2 A.G1136 A.C1007 G-C WC 19-XIX cWW cW-W 3 A.G1137 A.C1006 G-C WC 19-XIX cWW cW-W 4 A.G1138 A.C1005 G-C WC 19-XIX cWW cW-W 5 A.A1143 A.U1012 A+U Hoogsteen 23-XXIII cHW cM+W -------------------------------------------------------------------------- helix#31[0] bps=4 strand-1 5'-AGCG-3' bp-type ..|. strand-2 5'-UUGG-3' helix-form xx. 1 A.A1021 A.U1141 A+U rWC 21-XXI tWW tW+W 2 A.G1022 A.U1023 G+U Platform -- cSH cm+M 3 A.C1140 A.G1024 C-G WC 19-XIX cWW cW-W 4 A.G1139 A.G1025 G+G -- -- tWW tW+W -------------------------------------------------------------------------- helix#32[1] bps=3 strand-1 5'-ACG-3' bp-type .|| strand-2 3'-GGC-5' helix-form .. 1 A.A1029 A.G1125 A-G Sheared 11-XI tHS tM-m 2 A.C1030 A.G1124 C-G WC 19-XIX cWW cW-W 3 A.G1031 A.C1123 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#33[6] bps=26 strand-1 5'-ACCAUGCACCGAGCUGCGGCAGCGGC-3' bp-type ||||||||||..|||||||||||||| strand-2 3'-UGGUACGUGGAUCGACGCCGUUGUCG-5' helix-form A.AA.xxAA.xx.Ax.AAx.AA.x. 1 A.A1144 A.U1018 A-U WC 20-XX cWW cW-W 2 A.C1145 A.G1017 C-G WC 19-XIX cWW cW-W 3 A.C1146 A.G1016 C-G WC 19-XIX cWW cW-W 4 A.A1147 A.U1015 A-U WC 20-XX cWW cW-W 5 A.U1148 A.A1014 U-A WC 20-XX cWW cW-W 6 A.G1149 A.C1013 G-C WC 19-XIX cWW cW-W 7 A.C1150 A.G1011 C-G WC 19-XIX cWW cW-W 8 A.A1151 A.U1004 A-U WC 20-XX cWW cW-W 9 A.C1152 A.G1003 C-G WC 19-XIX cWW cW-W 10 A.C1153 A.G1002 C-G WC 19-XIX cWW cW-W 11 A.G1154 A.A1001 G-A Sheared 11-XI tSH tm-M 12 A.A1155 A.U999 A-U rHoogsteen 24-XXIV tHW tM-W 13 A.G1157 A.C998 G-C WC 19-XIX cWW cW-W 14 A.C1158 A.G997 C-G WC 19-XIX cWW cW-W 15 A.U1159 A.A996 U-A WC 20-XX cWW cW-W 16 A.G1160 A.C994 G-C WC 19-XIX cWW cW-W 17 A.C1161 A.G993 C-G WC 19-XIX cWW cW-W 18 A.G1162 A.C992 G-C WC 19-XIX cWW cW-W 19 A.G1163 A.C991 G-C WC 19-XIX cWW cW-W 20 A.C1164 A.G1185 C-G WC 19-XIX cWW cW-W 21 A.A1165 A.U1184 A-U WC 20-XX cWW cW-W 22 A.G1166 A.U1183 G-U Wobble 28-XXVIII cWW cW-W 23 A.C1167 A.G1182 C-G WC 19-XIX cWW cW-W 24 A.G1168 A.U1181 G-U Wobble 28-XXVIII cWW cW-W 25 A.G1171 A.C1178 G-C WC 19-XIX cWW cW-W 26 A.C1172 A.G1177 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#34[2] bps=12 strand-1 5'-GAAGGUGUGCUG-3' bp-type ...||.|||||. strand-2 3'-AGGUCGUACGGA-5' helix-form ...A...AAA. 1 A.G1212 A.A1237 G-A Sheared 11-XI tSH tm-M 2 A.A1213 A.G1236 A-G Sheared 11-XI tHS tM-m 3 A.A1214 A.G1235 A-G Sheared 11-XI tHS tM-m 4 A.G1215 A.U1234 G-U Wobble 28-XXVIII cWW cW-W 5 A.G1216 A.C1233 G-C WC 19-XIX cWW cW-W 6 A.U1217 A.G1232 U-G -- -- cWW cW-W 7 A.G1218 A.U1231 G-U Wobble 28-XXVIII cWW cW-W 8 A.U1219 A.A1230 U-A WC 20-XX cWW cW-W 9 A.G1220 A.C1229 G-C WC 19-XIX cWW cW-W 10 A.C1221 A.G1228 C-G WC 19-XIX cWW cW-W 11 A.U1222 A.G1227 U-G Wobble 28-XXVIII cWW cW-W 12 A.G1223 A.A1226 G-A -- -- tWH tW-M -------------------------------------------------------------------------- helix#35[3] bps=20 strand-1 5'-CAGCUGACAUAUUAACUGAG-3' bp-type ..|||||||.....|||||| strand-2 3'-AGCGACUGUUAAAGUGACUC-5' helix-form xxAAAAAx..xx..Ax.AA 1 A.C1251 A.A586 C-A -- -- tWH tW-M 2 A.A1254 A.G585 A-G -- -- tHS tM-m 3 A.G1256 A.C584 G-C WC 19-XIX cWW cW-W 4 A.C1257 A.G583 C-G WC 19-XIX cWW cW-W 5 A.U1258 A.A582 U-A WC 20-XX cWW cW-W 6 A.G1259 A.C581 G-C WC 19-XIX cWW cW-W 7 A.A1260 A.U580 A-U WC 20-XX cWW cW-W 8 A.C1261 A.G579 C-G WC 19-XIX cWW cW-W 9 A.A1262 A.U2017 A-U WC 20-XX cWW cW-W 10 A.U1263 A.U2016 U-U -- 16-XVI cWW cW-W 11 A.A1264 A.A2015 A-A ~Sheared -- tSH tm-M 12 A.U747 A.A2014 U-A -- -- cWS cW-m 13 A.U1267 A.A2013 U-A rHoogsteen 24-XXIV tWH tW-M 14 A.A1268 A.G2012 A-G Sheared 11-XI tHS tM-m 15 A.A1269 A.U2011 A-U WC 20-XX cWW cW-W 16 A.C1270 A.G2010 C-G WC 19-XIX cWW cW-W 17 A.U1648 A.A2009 U-A WC 20-XX cWW cW-W 18 A.G1649 A.C2008 G-C WC 19-XIX cWW cW-W 19 A.A1650 A.U2007 A-U WC 20-XX cWW cW-W 20 A.G1651 A.C2006 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#36[3] bps=15 strand-1 5'-CCCGCUCGCCGGGAG-3' bp-type ||||||||||.|||. strand-2 3'-GGGCGAGCGGACCUA-5' helix-form .AAAAx..A.x.x. 1 A.C1289 A.G1281 C-G WC 19-XIX cWW cW-W 2 A.C1290 A.G1280 C-G WC 19-XIX cWW cW-W 3 A.C1291 A.G1279 C-G WC 19-XIX cWW cW-W 4 A.G1292 A.C1278 G-C WC 19-XIX cWW cW-W 5 A.C1293 A.G1277 C-G WC 19-XIX cWW cW-W 6 A.U1294 A.A1276 U-A WC 20-XX cWW cW-W 7 A.C1295 A.G1645 C-G WC 19-XIX cWW cW-W 8 A.G1296 A.C1644 G-C WC 19-XIX cWW cW-W 9 A.C1297 A.G1643 C-G WC 19-XIX cWW cW-W 10 A.C1298 A.G1642 C-G WC 19-XIX cWW cW-W 11 A.G1299 A.A1641 G-A Sheared 11-XI tSH tm-M 12 A.G1627 A.C1639 G-C WC 19-XIX cWW cW-W 13 A.G1628 A.C1638 G-C WC 19-XIX cWW cW-W 14 A.A1630 A.U1636 A-U WC 20-XX cWW cW-W 15 A.G1631 A.A1635 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#37[2] bps=6 strand-1 5'-GACACC-3' bp-type |||.|| strand-2 3'-CUGUGG-5' helix-form AxxxA 1 A.G1303 A.C1625 G-C WC 19-XIX cWW cW-W 2 A.A1304 A.U1624 A-U WC 20-XX cWW cW-W 3 A.C1306 A.G1622 C-G WC 19-XIX cWW cW-W 4 A.A1608 A.U1621 A-U rHoogsteen 24-XXIV tHW tM-W 5 A.C1611 A.G1620 C-G WC 19-XIX cWW cW-W 6 A.C1612 A.G1619 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#38[1] bps=4 strand-1 5'-AGGU-3' bp-type .||| strand-2 3'-CCCA-5' helix-form ..x 1 A.A1308 A.C1606 A-C -- -- tHW tM-W 2 A.G1309 A.C1605 G-C WC 19-XIX cWW cW-W 3 A.G1310 A.C1604 G-C WC 19-XIX cWW cW-W 4 A.U1313 A.A1603 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#39[1] bps=10 strand-1 5'-CCUGUCCGUG-3' bp-type ||||||.|.. strand-2 3'-GGACGGGCAU-5' helix-form AAAAAxxxx 1 A.C1314 A.G1338 C-G WC 19-XIX cWW cW-W 2 A.C1315 A.G1337 C-G WC 19-XIX cWW cW-W 3 A.U1316 A.A1336 U-A WC 20-XX cWW cW-W 4 A.G1317 A.C1335 G-C WC 19-XIX cWW cW-W 5 A.U1318 A.G1334 U-G Wobble 28-XXVIII cWW cW-W 6 A.C1319 A.G1333 C-G WC 19-XIX cWW cW-W 7 A.C1320 A.G1331 C-G -- -- tWH tW-M 8 A.G1324 A.C1330 G-C WC 19-XIX cWW cW-W 9 A.U1647 A.A1328 U+A rWC 21-XXI tWW tW+W 10 A.G1288 A.U1326 G-U ~rHoogsteen -- tHW tM-W -------------------------------------------------------------------------- helix#40[4] bps=19 strand-1 5'-ACGACCCUAAGGCAGGCCG-3' bp-type .||||||.|.|||..|||. strand-2 3'-UGCUGGGAUGCUGUGCGGA-5' helix-form x..xAAx.x...x...A. 1 A.A1342 A.U1602 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.C1345 A.G1601 C-G WC 19-XIX cWW cW-W 3 A.G1346 A.C1600 G-C WC 19-XIX cWW cW-W 4 A.A1347 A.U1599 A-U WC 20-XX cWW cW-W 5 A.C1349 A.G1382 C-G WC 19-XIX cWW cW-W 6 A.C1350 A.G1381 C-G WC 19-XIX cWW cW-W 7 A.C1351 A.G1380 C-G WC 19-XIX cWW cW-W 8 A.U1352 A.A1378 U-A rHoogsteen 24-XXIV tWH tW-M 9 A.A1353 A.U1379 A-U WC 20-XX cWW cW-W 10 A.A1354 A.G1377 A-G Sheared 11-XI tHS tM-m 11 A.G1355 A.C1376 G-C WC 19-XIX cWW cW-W 12 A.G1356 A.U1375 G-U Wobble 28-XXVIII cWW cW-W 13 A.C1357 A.G1374 C-G WC 19-XIX cWW cW-W 14 A.A1359 A.U1372 A-U rHoogsteen 24-XXIV tHW tM-W 15 A.G1360 A.G1371 G-G ~Sheared -- tHS tM-m 16 A.G1361 A.C1370 G-C WC 19-XIX cWW cW-W 17 A.C1362 A.G1369 C-G WC 19-XIX cWW cW-W 18 A.C1363 A.G1368 C-G WC 19-XIX cWW cW-W 19 A.G1364 A.A1367 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#41[4] bps=20 strand-1 5'-AACCUGUACUUGGUGUUACU-3' bp-type ..||||||||||.||||||| strand-2 3'-UUGGACAUGAACUACAAUGG-5' helix-form xxAAA.xAx.AAAAAA... 1 A.A1393 A.U1391 A-U -- -- tHW tM-W 2 A.A1395 A.U1390 A-U rHoogsteen 24-XXIV tHW tM-W 3 A.C1398 A.G1389 C-G WC 19-XIX cWW cW-W 4 A.C1399 A.G1388 C-G WC 19-XIX cWW cW-W 5 A.U1400 A.A1387 U-A WC 20-XX cWW cW-W 6 A.G1401 A.C1386 G-C WC 19-XIX cWW cW-W 7 A.U1402 A.A1385 U-A WC 20-XX cWW cW-W 8 A.A1403 A.U1344 A-U WC 20-XX cWW cW-W 9 A.C1404 A.G1343 C-G WC 19-XIX cWW cW-W 10 A.U1405 A.A1597 U-A WC 20-XX cWW cW-W 11 A.U1406 A.A1596 U-A WC 20-XX cWW cW-W 12 A.G1407 A.C1595 G-C WC 19-XIX cWW cW-W 13 A.G1408 A.U1594 G-U -- -- cWW cW-W 14 A.U1409 A.A1593 U-A WC 20-XX cWW cW-W 15 A.G1410 A.C1592 G-C WC 19-XIX cWW cW-W 16 A.U1411 A.A1591 U-A WC 20-XX cWW cW-W 17 A.U1412 A.A1590 U-A WC 20-XX cWW cW-W 18 A.A1413 A.U1589 A-U WC 20-XX cWW cW-W 19 A.C1414 A.G1588 C-G WC 19-XIX cWW cW-W 20 A.U1415 A.G1587 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#42[1] bps=10 strand-1 5'-CGAGGGGGGA-3' bp-type |..||||... strand-2 3'-GAUCUCCGAA-5' helix-form .xxAAA... 1 A.C1417 A.G1581 C-G WC 19-XIX cWW cW-W 2 A.G1418 A.A1580 G-A Sheared 11-XI tSH tm-M 3 A.A1419 A.U1578 A-U rHoogsteen 24-XXIV tHW tM-W 4 A.G1421 A.C1577 G-C WC 19-XIX cWW cW-W 5 A.G1422 A.U1576 G-U Wobble 28-XXVIII cWW cW-W 6 A.G1423 A.C1575 G-C WC 19-XIX cWW cW-W 7 A.G1424 A.C1574 G-C WC 19-XIX cWW cW-W 8 A.G1425 A.G1573 G-G -- -- t.H t.-M 9 A.G1426 A.A1572 G-A Sheared 11-XI tSH tm-M 10 A.A1427 A.A1571 A+A -- 02-II tHH tM+M -------------------------------------------------------------------------- helix#43[4] bps=24 strand-1 5'-GCCCGGUCAACAAAGCCCGCUUCC-3' bp-type ||||||||||||..|||..||||| strand-2 3'-CGGGCCGGUUGUAUCGGAAGAGGG-5' helix-form xAAAA.xAAAA..xAA.x.AAAx 1 A.G1459 A.C1451 G-C WC 19-XIX cWW cW-W 2 A.C1461 A.G1450 C-G WC 19-XIX cWW cW-W 3 A.C1462 A.G1449 C-G WC 19-XIX cWW cW-W 4 A.C1463 A.G1448 C-G WC 19-XIX cWW cW-W 5 A.G1464 A.C1447 G-C WC 19-XIX cWW cW-W 6 A.G1465 A.C1446 G-C WC 19-XIX cWW cW-W 7 A.U1466 A.G1445 U-G Wobble 28-XXVIII cWW cW-W 8 A.C1547 A.G1444 C-G WC 19-XIX cWW cW-W 9 A.A1548 A.U1443 A-U WC 20-XX cWW cW-W 10 A.A1549 A.U1442 A-U WC 20-XX cWW cW-W 11 A.C1550 A.G1441 C-G WC 19-XIX cWW cW-W 12 A.A1551 A.U1440 A-U WC 20-XX cWW cW-W 13 A.A1552 A.A1439 A-A -- -- tSH tm-M 14 A.A1553 A.U1438 A-U rHoogsteen 24-XXIV tHW tM-W 15 A.G1555 A.C1437 G-C WC 19-XIX cWW cW-W 16 A.C1556 A.G1436 C-G WC 19-XIX cWW cW-W 17 A.C1557 A.G1435 C-G WC 19-XIX cWW cW-W 18 A.C1558 A.A1434 C+A ~rWobble 26-XXVI tWW tW+W 19 A.G1560 A.A1433 G-A -- -- cWW cW-W 20 A.C1561 A.G1432 C-G WC 19-XIX cWW cW-W 21 A.U1562 A.A1431 U-A WC 20-XX cWW cW-W 22 A.U1563 A.G1430 U-G Wobble 28-XXVIII cWW cW-W 23 A.C1564 A.G1429 C-G WC 19-XIX cWW cW-W 24 A.C1565 A.G1568 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#44[2] bps=10 strand-1 5'-GGUUUUCCGG-3' bp-type |.|||||||| strand-2 3'-CUAAAAGGCC-5' helix-form .AA..AAxA 1 A.G1482 A.C1507 G-C WC 19-XIX cWW cW-W 2 A.G1483 A.U1506 G-U -- -- cWW cW-W 3 A.U1484 A.A1505 U-A WC 20-XX cWW cW-W 4 A.U1485 A.A1504 U-A WC 20-XX cWW cW-W 5 A.U1486 A.A1503 U-A WC 20-XX cWW cW-W 6 A.U1487 A.A1502 U-A WC 20-XX cWW cW-W 7 A.C1488 A.G1501 C-G WC 19-XIX cWW cW-W 8 A.C1489 A.G1500 C-G WC 19-XIX cWW cW-W 9 A.G1491 A.C1499 G-C WC 19-XIX cWW cW-W 10 A.G1492 A.C1498 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#45[3] bps=24 strand-1 5'-GGCUGAGGCGUGAGACGAGGCACU-3' bp-type |||...|||||...||..|||||. strand-2 3'-UCGGAUCUGCGAAUUGAGUCGUGG-5' helix-form .AA..xx.AA..x.x.x..AAA. 1 A.G1510 A.U1481 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1511 A.C1480 G-C WC 19-XIX cWW cW-W 3 A.C1512 A.G1479 C-G WC 19-XIX cWW cW-W 4 A.U1513 A.G1478 U-G -- -- cWW cW-W 5 A.G1514 A.A1477 G-A Sheared 11-XI tSH tm-M 6 A.A1515 A.U1476 A-U rHoogsteen 24-XXIV tHW tM-W 7 A.G1516 A.C1732 G-C WC 19-XIX cWW cW-W 8 A.G1517 A.U1474 G-U Wobble 28-XXVIII cWW cW-W 9 A.C1518 A.G1473 C-G WC 19-XIX cWW cW-W 10 A.G1519 A.C1472 G-C WC 19-XIX cWW cW-W 11 A.U1520 A.G1471 U-G Wobble 28-XXVIII cWW cW-W 12 A.G1521 A.A1470 G-A Sheared 11-XI tSH tm-M 13 A.A1522 A.A1469 A+A -- 02-II tHH tM+M 14 A.G1524 A.U1468 G-U -- -- cWW cW-W 15 A.A1525 A.U1467 A-U WC 20-XX cWW cW-W 16 A.C1526 A.G1546 C-G WC 19-XIX cWW cW-W 17 A.G1527 A.A1545 G-A Sheared 11-XI tSH tm-M 18 A.A1528 A.G1543 A-G Sheared 11-XI tHS tM-m 19 A.G1529 A.U1542 G-U Wobble 28-XXVIII cWW cW-W 20 A.G1530 A.C1541 G-C WC 19-XIX cWW cW-W 21 A.C1531 A.G1540 C-G WC 19-XIX cWW cW-W 22 A.A1532 A.U1539 A-U WC 20-XX cWW cW-W 23 A.C1533 A.G1538 C-G WC 19-XIX cWW cW-W 24 A.U1534 A.G1537 U+G -- -- tSW tm+W -------------------------------------------------------------------------- helix#46[4] bps=24 strand-1 5'-GCUCGGGUGGAGAAGCUGGCUGCA-3' bp-type .||||||||.|||.|||||||||| strand-2 3'-AGAGCCCACCUCUUCGACCGGUGU-5' helix-form xAAA.AA.xx.xxxxA.....x. 1 A.G1653 A.A2005 G-A -- -- c.W c.-W 2 A.C1656 A.G2004 C-G WC 19-XIX cWW cW-W 3 A.U1657 A.A2003 U-A WC 20-XX cWW cW-W 4 A.C1658 A.G2002 C-G WC 19-XIX cWW cW-W 5 A.G1659 A.C2001 G-C WC 19-XIX cWW cW-W 6 A.G1660 A.C2000 G-C WC 19-XIX cWW cW-W 7 A.G1661 A.C1999 G-C WC 19-XIX cWW cW-W 8 A.U1662 A.A1998 U-A WC 20-XX cWW cW-W 9 A.G1663 A.C1997 G-C WC 19-XIX cWW cW-W 10 A.G1992 A.C1996 G-C -- -- cWW cW-W 11 A.A1665 A.U1995 A-U WC 20-XX cWW cW-W 12 A.G1666 A.C1994 G-C WC 19-XIX cWW cW-W 13 A.A1669 A.U1993 A-U WC 20-XX cWW cW-W 14 A.A1668 A.U1991 A-U rHoogsteen 24-XXIV tHW tM-W 15 A.G1674 A.C1990 G-C WC 19-XIX cWW cW-W 16 A.C1764 A.G1988 C-G WC 19-XIX cWW cW-W 17 A.U1765 A.A1987 U-A WC 20-XX cWW cW-W 18 A.G1766 A.C1986 G-C WC 19-XIX cWW cW-W 19 A.G1767 A.C1985 G-C WC 19-XIX cWW cW-W 20 A.C1768 A.G1984 C-G WC 19-XIX cWW cW-W 21 A.U1769 A.G1983 U-G Wobble 28-XXVIII cWW cW-W 22 A.G1770 A.U1982 G-U Wobble 28-XXVIII cWW cW-W 23 A.C1771 A.G1980 C-G WC 19-XIX cWW cW-W 24 A.A1772 A.U1979 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#47[1] bps=10 strand-1 5'-GUGCCUAACU-3' bp-type |||||...|. strand-2 3'-CACGGAAGGG-5' helix-form AAAAxx... 1 A.G1682 A.C1706 G-C WC 19-XIX cWW cW-W 2 A.U1683 A.A1705 U-A WC 20-XX cWW cW-W 3 A.G1684 A.C1704 G-C WC 19-XIX cWW cW-W 4 A.C1685 A.G1703 C-G WC 19-XIX cWW cW-W 5 A.C1686 A.G1702 C-G WC 19-XIX cWW cW-W 6 A.U1688 A.A1700 U-A -- -- tSH tm-M 7 A.A1689 A.A1698 A+A -- 02-II tHH tM+M 8 A.A1690 A.G1697 A-G Sheared 11-XI tHS tM-m 9 A.C1691 A.G1696 C-G WC 19-XIX cWW cW-W 10 A.U1692 A.G1695 U+G -- -- tWW tW+W -------------------------------------------------------------------------- helix#48[3] bps=20 strand-1 5'-GGGAUGAGCUGAAAUCAGUC-3' bp-type .||||..|||...||||||| strand-2 3'-UCCUGAGUGGAUAUAGUCGG-5' helix-form xx..x......x..AAAAx 1 A.G1731 A.U1729 G-U ~Sheared -- tSH tm-M 2 A.G1733 A.C1728 G-C WC 19-XIX cWW cW-W 3 A.G1734 A.C1726 G-C WC 19-XIX cWW cW-W 4 A.A1735 A.U1725 A-U WC 20-XX cWW cW-W 5 A.U1736 A.G1724 U-G Wobble 28-XXVIII cWW cW-W 6 A.G1738 A.A1722 G-A Sheared 11-XI tSH tm-M 7 A.A1739 A.G1721 A-G Sheared 11-XI tHS tM-m 8 A.G1740 A.U1720 G-U Wobble 28-XXVIII cWW cW-W 9 A.C1741 A.G1719 C-G WC 19-XIX cWW cW-W 10 A.U1742 A.G1718 U-G Wobble 28-XXVIII cWW cW-W 11 A.G1743 A.A1717 G-A Sheared 11-XI tSH tm-M 12 A.A1744 A.U1716 A-U rHoogsteen 24-XXIV tHW tM-W 13 A.A1745 A.A1713 A+A -- -- tWW tW+W 14 A.A1746 A.U1712 A-U WC 20-XX cWW cW-W 15 A.U1747 A.A1711 U-A WC 20-XX cWW cW-W 16 A.C1748 A.G1710 C-G WC 19-XIX cWW cW-W 17 A.A1749 A.U1709 A-U WC 20-XX cWW cW-W 18 A.G1750 A.C1708 G-C WC 19-XIX cWW cW-W 19 A.U1751 A.G1707 U-G Wobble 28-XXVIII cWW cW-W 20 A.C1752 A.G1756 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#49[1] bps=5 strand-1 5'-ACUGU-3' bp-type ...|| strand-2 3'-ACACA-5' helix-form .xx. 1 A.A1773 A.A1791 A-A -- -- tHW tM-W 2 A.C1774 A.C1790 C-C ~Sheared -- tHS tM-m 3 A.U1775 A.A764 U+A Hoogsteen 23-XXIII cWH cW+M 4 A.G1776 A.C1788 G-C WC 19-XIX cWW cW-W 5 A.U1777 A.A1787 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#50[2] bps=7 strand-1 5'-GCACUGU-3' bp-type ||||.|| strand-2 3'-UGUGGCA-5' helix-form .A.AAA 1 A.G1792 A.U1827 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1793 A.G1826 C-G WC 19-XIX cWW cW-W 3 A.A1794 A.U1825 A-U WC 20-XX cWW cW-W 4 A.C1795 A.G1824 C-G WC 19-XIX cWW cW-W 5 A.U1796 A.G1823 U-G -- -- cWW cW-W 6 A.G1797 A.C1822 G-C WC 19-XIX cWW cW-W 7 A.U1798 A.A1821 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#51[1] bps=8 strand-1 5'-GCAACACG-3' bp-type ....|||. strand-2 3'-UGAGGUGA-5' helix-form .x..... 1 A.G1799 A.U1818 G+U -- -- tWS tW+m 2 A.C1800 A.G1817 C+G -- -- tWW tW+W 3 A.A1802 A.A1815 A+A -- 02-II tHH tM+M 4 A.A1803 A.G1814 A-G Sheared 11-XI tHS tM-m 5 A.C1804 A.G1813 C-G WC 19-XIX cWW cW-W 6 A.A1805 A.U1812 A-U WC 20-XX cWW cW-W 7 A.C1806 A.G1811 C-G WC 19-XIX cWW cW-W 8 A.G1807 A.A1810 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#52[1] bps=6 strand-1 5'-ACGCCU-3' bp-type |||||. strand-2 3'-UGCGGA-5' helix-form x.A.x 1 A.A1829 A.U1693 A-U WC 20-XX cWW cW-W 2 A.C1830 A.G1975 C-G WC 19-XIX cWW cW-W 3 A.G1831 A.C1974 G-C WC 19-XIX cWW cW-W 4 A.C1832 A.G1973 C-G WC 19-XIX cWW cW-W 5 A.C1833 A.G1972 C-G WC 19-XIX cWW cW-W 6 A.U1834 A.A1970 U+A -- -- cWH cW+M -------------------------------------------------------------------------- helix#53[1] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G2056 A.C2612 G-C WC 19-XIX cWW cW-W 2 A.G2057 A.C2611 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#54[3] bps=13 strand-1 5'-UCUGCCGUGGGCG-3' bp-type .|||||||||||. strand-2 3'-AGACGGCGCCCGA-5' helix-form .AxAAAAxAAxx 1 A.U2615 A.A2054 U-A -- -- cWW cW-W 2 A.C2616 A.G2053 C-G WC 19-XIX cWW cW-W 3 A.U2617 A.A2052 U-A WC 20-XX cWW cW-W 4 A.G2618 A.C2050 G-C WC 19-XIX cWW cW-W 5 A.C2619 A.G2049 C-G WC 19-XIX cWW cW-W 6 A.C2620 A.G2048 C-G WC 19-XIX cWW cW-W 7 A.G2621 A.C2047 G-C WC 19-XIX cWW cW-W 8 A.U2622 A.G2046 U-G Wobble 28-XXVIII cWW cW-W 9 A.G2623 A.C2045 G-C WC 19-XIX cWW cW-W 10 A.G2624 A.C2044 G-C WC 19-XIX cWW cW-W 11 A.G2625 A.C2043 G-C WC 19-XIX cWW cW-W 12 A.C2626 A.G2777 C-G WC 19-XIX cWW cW-W 13 A.G2627 A.A2781 G+A Linker -- tSW tm+W -------------------------------------------------------------------------- helix#55[3] bps=24 strand-1 5'-AGGACGGAGUGGACGCAUUGGUGA-3' bp-type .|...||||..|.||||||.||.. strand-2 3'-GCAUUCCUCGUCGGCGUAAUCGAU-5' helix-form ...x.AAA...x.AA.Ax.A..x 1 A.A2662 A.G2659 A-G Sheared 11-XI tHS tM-m 2 A.G2663 A.C2658 G-C WC 19-XIX cWW cW-W 3 A.G2664 A.A2657 G-A Sheared 11-XI tSH tm-M 4 A.A2665 A.U2656 A-U -- -- tHW tM-W 5 A.C2667 A.U2653 C-U -- -- cWW cW-W 6 A.G2668 A.C2652 G-C WC 19-XIX cWW cW-W 7 A.G2669 A.C2651 G-C WC 19-XIX cWW cW-W 8 A.A2670 A.U2650 A-U WC 20-XX cWW cW-W 9 A.G2671 A.C2649 G-C WC 19-XIX cWW cW-W 10 A.U2672 A.G2648 U-G -- -- cWW cW-W 11 A.G2673 A.U2647 G-U -- -- cWW cW-W 12 A.G2674 A.C2646 G-C WC 19-XIX cWW cW-W 13 A.A2675 A.G2732 A-G -- -- cWW cW-W 14 A.C2676 A.G2731 C-G WC 19-XIX cWW cW-W 15 A.G2677 A.C2730 G-C WC 19-XIX cWW cW-W 16 A.C2678 A.G2729 C-G WC 19-XIX cWW cW-W 17 A.A2679 A.U2728 A-U WC 20-XX cWW cW-W 18 A.U2680 A.A2727 U-A WC 20-XX cWW cW-W 19 A.U2684 A.A2725 U-A WC 20-XX cWW cW-W 20 A.G2685 A.U2724 G-U -- -- cWW cW-W 21 A.G2686 A.C2723 G-C WC 19-XIX cWW cW-W 22 A.U2687 A.G2722 U-G Wobble 28-XXVIII cWW cW-W 23 A.G2688 A.A2721 G-A Sheared 11-XI tSH tm-M 24 A.A2873 A.U2720 A+U Hoogsteen 23-XXIII cHW cM+W -------------------------------------------------------------------------- helix#56[3] bps=14 strand-1 5'-CGGGUUGUCAUGGU-3' bp-type |||||||||||||| strand-2 3'-GCCCGACGGUACCG-5' helix-form AA..xAAAAAxAA 1 A.C2691 A.G2718 C-G WC 19-XIX cWW cW-W 2 A.G2692 A.C2717 G-C WC 19-XIX cWW cW-W 3 A.G2693 A.C2716 G-C WC 19-XIX cWW cW-W 4 A.G2694 A.C2715 G-C WC 19-XIX cWW cW-W 5 A.U2695 A.G2714 U-G Wobble 28-XXVIII cWW cW-W 6 A.U2696 A.A2711 U-A WC 20-XX cWW cW-W 7 A.G2697 A.C2710 G-C WC 19-XIX cWW cW-W 8 A.U2698 A.G2709 U-G Wobble 28-XXVIII cWW cW-W 9 A.C2699 A.G2708 C-G WC 19-XIX cWW cW-W 10 A.A2700 A.U2707 A-U WC 20-XX cWW cW-W 11 A.U2701 A.A2706 U-A WC 20-XX cWW cW-W 12 A.G1455 A.C2704 G-C WC 19-XIX cWW cW-W 13 A.G1456 A.C2703 G-C WC 19-XIX cWW cW-W 14 A.U1457 A.G2702 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#57[4] bps=30 strand-1 5'-CAUAAGCCGAACUUGCCCCGAAGUUCUCCC-3' bp-type .....|||...||..||||...|||||||| strand-2 3'-AAAGUCGGAUAGAGAGGGGAGUCAAGAGGG-5' helix-form ..xxx.x.xx....xAAA.xxx.AAA.Ax 1 A.C2752 A.A2750 C+A -- -- tHS tM+m 2 A.A2753 A.A2749 A-A -- 05-V tWH tW-M 3 A.U2754 A.A2748 U-A rHoogsteen 24-XXIV tWH tW-M 4 A.A2757 A.G2747 A-G Sheared 11-XI tHS tM-m 5 A.A2758 A.U2756 A+U -- -- cHW cM+W 6 A.G2759 A.C2745 G-C WC 19-XIX cWW cW-W 7 A.C2760 A.G2744 C-G WC 19-XIX cWW cW-W 8 A.C2762 A.G2742 C-G WC 19-XIX cWW cW-W 9 A.G2763 A.A2741 G-A Sheared 11-XI tSH tm-M 10 A.A2764 A.U2739 A-U -- -- tHW tM-W 11 A.A2766 A.A2738 A-A -- -- cWW cW-W 12 A.C2767 A.G2737 C-G WC 19-XIX cWW cW-W 13 A.U2768 A.A2736 U-A WC 20-XX cWW cW-W 14 A.U2769 A.G2735 U-G -- -- cWW cW-W 15 A.G2770 A.A2734 G-A Sheared 11-XI tSH tm-M 16 A.C2771 A.G2643 C-G WC 19-XIX cWW cW-W 17 A.C2772 A.G2642 C-G WC 19-XIX cWW cW-W 18 A.C2773 A.G2641 C-G WC 19-XIX cWW cW-W 19 A.C2774 A.G2640 C-G WC 19-XIX cWW cW-W 20 A.G2775 A.A2639 G-A Sheared 11-XI tSH tm-M 21 A.A2778 A.G2638 A-G -- -- tHS tM-m 22 A.A2776 A.U2637 A-U rHoogsteen 24-XXIV tHW tM-W 23 A.G2782 A.C2636 G-C WC 19-XIX cWW cW-W 24 A.U2783 A.A2635 U-A WC 20-XX cWW cW-W 25 A.U2784 A.A2634 U-A WC 20-XX cWW cW-W 26 A.C2785 A.G2633 C-G WC 19-XIX cWW cW-W 27 A.U2786 A.A2632 U-A WC 20-XX cWW cW-W 28 A.C2787 A.G2631 C-G WC 19-XIX cWW cW-W 29 A.C2788 A.G2630 C-G WC 19-XIX cWW cW-W 30 A.C2789 A.G2894 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#58[1] bps=8 strand-1 5'-AGGGUCCU-3' bp-type |||||||. strand-2 3'-UCCCAGGU-5' helix-form xAAAAx. 1 A.A2799 A.U2796 A-U WC 20-XX cWW cW-W 2 A.G2801 A.C2795 G-C WC 19-XIX cWW cW-W 3 A.G2802 A.C2794 G-C WC 19-XIX cWW cW-W 4 A.G2803 A.C2793 G-C WC 19-XIX cWW cW-W 5 A.U2804 A.A2792 U-A WC 20-XX cWW cW-W 6 A.C2805 A.G2791 C-G WC 19-XIX cWW cW-W 7 A.C2806 A.G2892 C-G WC 19-XIX cWW cW-W 8 A.U2807 A.U2891 U-U -- 16-XVI cWW cW-W -------------------------------------------------------------------------- helix#59[2] bps=9 strand-1 5'-AGGACGUUG-3' bp-type .||.||||| strand-2 3'-GCCAGCAGC-5' helix-form .A.xA... 1 A.A2810 A.G2890 A-G Sheared 11-XI tHS tM-m 2 A.G2811 A.C2889 G-C WC 19-XIX cWW cW-W 3 A.G2812 A.C2888 G-C WC 19-XIX cWW cW-W 4 A.A2813 A.A2887 A-A -- -- cWW cW-W 5 A.C2815 A.G2831 C-G WC 19-XIX cWW cW-W 6 A.G2816 A.C2830 G-C WC 19-XIX cWW cW-W 7 A.U2817 A.A2829 U-A WC 20-XX cWW cW-W 8 A.U2818 A.G2828 U-G Wobble 28-XXVIII cWW cW-W 9 A.G2819 A.C2827 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#60[2] bps=9 strand-1 5'-GUAGGCCGG-3' bp-type .|||||||| strand-2 3'-AAUCUGGCC-5' helix-form xAAx.AAA 1 A.G2834 A.A2883 G-A Sheared 11-XI tSH tm-M 2 A.U2836 A.A2882 U-A WC 20-XX cWW cW-W 3 A.A2837 A.U2881 A-U WC 20-XX cWW cW-W 4 A.G2838 A.C2880 G-C WC 19-XIX cWW cW-W 5 A.G2839 A.U2878 G-U Wobble 28-XXVIII cWW cW-W 6 A.C2840 A.G2877 C-G WC 19-XIX cWW cW-W 7 A.C2841 A.G2876 C-G WC 19-XIX cWW cW-W 8 A.G2842 A.C2875 G-C WC 19-XIX cWW cW-W 9 A.G2843 A.C2874 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#61[1] bps=3 strand-1 5'-GUG-3' bp-type ||. strand-2 3'-CGA-5' helix-form .. 1 A.G2846 A.C2870 G-C WC 19-XIX cWW cW-W 2 A.U2847 A.G2869 U-G Wobble 28-XXVIII cWW cW-W 3 A.G2848 A.A2868 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#62[1] bps=7 strand-1 5'-AGCGCAG-3' bp-type .|||||. strand-2 3'-UUGCGUA-5' helix-form ..AAA. 1 A.A2851 A.U2866 A+U -- -- cH. cM+. 2 A.G2852 A.U2865 G-U Wobble 28-XXVIII cWW cW-W 3 A.C2853 A.G2864 C-G WC 19-XIX cWW cW-W 4 A.G2854 A.C2863 G-C WC 19-XIX cWW cW-W 5 A.C2855 A.G2862 C-G WC 19-XIX cWW cW-W 6 A.A2856 A.U2861 A-U WC 20-XX cWW cW-W 7 A.G2857 A.A2860 G-A Sheared 11-XI tSH tm-M **************************************************************************** List of 135 stems Note: a stem is defined as a helix consisting of only canonical WC/wobble pairs, with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=8 strand-1 5'-GGUUAAGC-3' bp-type |||||||| strand-2 3'-CCAAUUCG-5' helix-form AAAAAAA 1 A.G1 A.C2902 G-C WC 19-XIX cWW cW-W 2 A.G2 A.C2901 G-C WC 19-XIX cWW cW-W 3 A.U3 A.A2900 U-A WC 20-XX cWW cW-W 4 A.U4 A.A2899 U-A WC 20-XX cWW cW-W 5 A.A5 A.U2898 A-U WC 20-XX cWW cW-W 6 A.A6 A.U2897 A-U WC 20-XX cWW cW-W 7 A.G7 A.C2896 G-C WC 19-XIX cWW cW-W 8 A.C8 A.G2895 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#2[#2] bps=8 strand-1 5'-GCGUACAC-3' bp-type |||||||| strand-2 3'-UGCAUGUG-5' helix-form AAAAAAA 1 A.G15 A.U525 G-U Wobble 28-XXVIII cWW cW-W 2 A.C16 A.G524 C-G WC 19-XIX cWW cW-W 3 A.G17 A.C523 G-C WC 19-XIX cWW cW-W 4 A.U18 A.A522 U-A WC 20-XX cWW cW-W 5 A.A19 A.U521 A-U WC 20-XX cWW cW-W 6 A.C20 A.G520 C-G WC 19-XIX cWW cW-W 7 A.A21 A.U519 A-U WC 20-XX cWW cW-W 8 A.C22 A.G518 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#3[#2] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G35 A.C445 G-C WC 19-XIX cWW cW-W 2 A.G36 A.C444 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#4[#2] bps=6 strand-1 5'-CAGUCA-3' bp-type |||||| strand-2 3'-GUCAGU-5' helix-form AA.AA 1 A.C37 A.G442 C-G WC 19-XIX cWW cW-W 2 A.A38 A.U441 A-U WC 20-XX cWW cW-W 3 A.G39 A.C440 G-C WC 19-XIX cWW cW-W 4 A.U40 A.A439 U-A WC 20-XX cWW cW-W 5 A.C41 A.G438 C-G WC 19-XIX cWW cW-W 6 A.A42 A.U437 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#5[#2] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.A44 A.U434 A-U WC 20-XX cWW cW-W 2 A.G45 A.C433 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#6[#3] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G46 A.C179 G-C WC 19-XIX cWW cW-W 2 A.C47 A.G178 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#7[#4] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form AA 1 A.G54 A.C116 G-C WC 19-XIX cWW cW-W 2 A.G55 A.C115 G-C WC 19-XIX cWW cW-W 3 A.A56 A.U114 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#8[#4] bps=2 strand-1 5'-CG-3' bp-type || strand-2 3'-GC-5' helix-form . 1 A.C57 A.G70 C-G WC 19-XIX cWW cW-W 2 A.G58 A.C69 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#9[#4] bps=3 strand-1 5'-AUC-3' bp-type ||| strand-2 3'-UAG-5' helix-form .. 1 A.A64 A.U90 A-U WC 20-XX cWW cW-W 2 A.U65 A.A89 U-A WC 20-XX cWW cW-W 3 A.C66 A.G88 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#10[#5] bps=2 strand-1 5'-CG-3' bp-type || strand-2 3'-GC-5' helix-form A 1 A.C76 A.G110 C-G WC 19-XIX cWW cW-W 2 A.G77 A.C109 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#11[#5] bps=4 strand-1 5'-CGGU-3' bp-type |||| strand-2 3'-GCCA-5' helix-form AA. 1 A.C79 A.G107 C-G WC 19-XIX cWW cW-W 2 A.G80 A.C106 G-C WC 19-XIX cWW cW-W 3 A.G81 A.C105 G-C WC 19-XIX cWW cW-W 4 A.U82 A.A104 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#12[#5] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form A. 1 A.G85 A.C97 G-C WC 19-XIX cWW cW-W 2 A.G86 A.C96 G-C WC 19-XIX cWW cW-W 3 A.U87 A.A95 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#13[#6] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form A. 1 A.G121 A.C130 G-C WC 19-XIX cWW cW-W 2 A.G122 A.C129 G-C WC 19-XIX cWW cW-W 3 A.G123 A.C128 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#14[#6] bps=7 strand-1 5'-AGUGUGU-3' bp-type ||||||| strand-2 3'-UCACACA-5' helix-form AAAAAA 1 A.A131 A.U148 A-U WC 20-XX cWW cW-W 2 A.G132 A.C147 G-C WC 19-XIX cWW cW-W 3 A.U133 A.A146 U-A WC 20-XX cWW cW-W 4 A.G134 A.C145 G-C WC 19-XIX cWW cW-W 5 A.U135 A.A144 U-A WC 20-XX cWW cW-W 6 A.G136 A.C143 G-C WC 19-XIX cWW cW-W 7 A.U137 A.A142 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#15[#7] bps=9 strand-1 5'-UCAUUAACU-3' bp-type ||||||||| strand-2 3'-AGUAAUUGG-5' helix-form .AAAAAA. 1 A.U150 A.A176 U-A WC 20-XX cWW cW-W 2 A.C151 A.G175 C-G WC 19-XIX cWW cW-W 3 A.A152 A.U174 A-U WC 20-XX cWW cW-W 4 A.U153 A.A173 U-A WC 20-XX cWW cW-W 5 A.U154 A.A172 U-A WC 20-XX cWW cW-W 6 A.A155 A.U171 A-U WC 20-XX cWW cW-W 7 A.A156 A.U170 A-U WC 20-XX cWW cW-W 8 A.C157 A.G169 C-G WC 19-XIX cWW cW-W 9 A.U158 A.G168 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#16[#2] bps=5 strand-1 5'-CGGGG-3' bp-type ||||| strand-2 3'-GCCCC-5' helix-form AAA. 1 A.C184 A.G212 C-G WC 19-XIX cWW cW-W 2 A.G185 A.C211 G-C WC 19-XIX cWW cW-W 3 A.G186 A.C210 G-C WC 19-XIX cWW cW-W 4 A.G187 A.C209 G-C WC 19-XIX cWW cW-W 5 A.G188 A.C208 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#17[#9] bps=2 strand-1 5'-UC-3' bp-type || strand-2 3'-AG-5' helix-form A 1 A.U224 A.A231 U-A WC 20-XX cWW cW-W 2 A.C225 A.G230 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#18[#10] bps=5 strand-1 5'-UCCCC-3' bp-type ||||| strand-2 3'-AGGGG-5' helix-form AAAA 1 A.U235 A.A262 U-A WC 20-XX cWW cW-W 2 A.C236 A.G261 C-G WC 19-XIX cWW cW-W 3 A.C237 A.G260 C-G WC 19-XIX cWW cW-W 4 A.C238 A.G259 C-G WC 19-XIX cWW cW-W 5 A.C239 A.G258 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#19[#10] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G245 A.C253 G-C WC 19-XIX cWW cW-W 2 A.C246 A.G252 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#20[#8] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form .A 1 A.G266 A.C426 G-C WC 19-XIX cWW cW-W 2 A.C267 A.G425 C-G WC 19-XIX cWW cW-W 3 A.C268 A.G424 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#21[#11] bps=4 strand-1 5'-GAGC-3' bp-type |||| strand-2 3'-CUCG-5' helix-form .AA 1 A.G271 A.C366 G-C WC 19-XIX cWW cW-W 2 A.A272 A.U365 A-U WC 20-XX cWW cW-W 3 A.G273 A.C364 G-C WC 19-XIX cWW cW-W 4 A.C274 A.G363 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#22[#11] bps=6 strand-1 5'-CAGUGU-3' bp-type |||||| strand-2 3'-GUCGUA-5' helix-form ..... 1 A.C281 A.G359 C-G WC 19-XIX cWW cW-W 2 A.A282 A.U358 A-U WC 20-XX cWW cW-W 3 A.G283 A.C357 G-C WC 19-XIX cWW cW-W 4 A.U284 A.G356 U-G Wobble 28-XXVIII cWW cW-W 5 A.G285 A.U355 G-U Wobble 28-XXVIII cWW cW-W 6 A.U286 A.A354 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#23[#11] bps=2 strand-1 5'-UG-3' bp-type || strand-2 3'-AC-5' helix-form . 1 A.U288 A.A352 U-A WC 20-XX cWW cW-W 2 A.G289 A.C351 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#24[#11] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-UA-5' helix-form . 1 A.G291 A.U349 G-U Wobble 28-XXVIII cWW cW-W 2 A.U292 A.A348 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#25[#11] bps=3 strand-1 5'-GUG-3' bp-type ||| strand-2 3'-CAC-5' helix-form .A 1 A.G295 A.C343 G-C WC 19-XIX cWW cW-W 2 A.U296 A.A342 U-A WC 20-XX cWW cW-W 3 A.G297 A.C341 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#26[#12] bps=3 strand-1 5'-GCG-3' bp-type ||| strand-2 3'-CGC-5' helix-form .A 1 A.G301 A.C316 G-C WC 19-XIX cWW cW-W 2 A.C302 A.G315 C-G WC 19-XIX cWW cW-W 3 A.G303 A.C314 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#27[#12] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G317 A.C334 G-C WC 19-XIX cWW cW-W 2 A.C318 A.G333 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#28[#11] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form AA 1 A.G325 A.C337 G-C WC 19-XIX cWW cW-W 2 A.G326 A.C336 G-C WC 19-XIX cWW cW-W 3 A.G327 A.C335 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#29[#13] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.G375 A.U399 G-U Wobble 28-XXVIII cWW cW-W 2 A.G376 A.C398 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#30[#13] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form .. 1 A.G380 A.C394 G-C WC 19-XIX cWW cW-W 2 A.G381 A.C393 G-C WC 19-XIX cWW cW-W 3 A.A382 A.U392 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#31[#14] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G406 A.C421 G-C WC 19-XIX cWW cW-W 2 A.G407 A.C420 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#32[#14] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G409 A.C418 G-C WC 19-XIX cWW cW-W 2 A.G410 A.C417 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#33[#15] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C461 A.G468 C-G WC 19-XIX cWW cW-W 2 A.C462 A.G467 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#34[#16] bps=4 strand-1 5'-CCCC-3' bp-type |||| strand-2 3'-GGGG-5' helix-form A.. 1 A.C484 A.G496 C-G WC 19-XIX cWW cW-W 2 A.C485 A.G495 C-G WC 19-XIX cWW cW-W 3 A.C486 A.G494 C-G WC 19-XIX cWW cW-W 4 A.C487 A.G493 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#35[#18] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.G535 A.U558 G-U Wobble 28-XXVIII cWW cW-W 2 A.G536 A.C557 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#36[#18] bps=5 strand-1 5'-GCACG-3' bp-type ||||| strand-2 3'-UGUGC-5' helix-form AAAA 1 A.G539 A.U554 G-U Wobble 28-XXVIII cWW cW-W 2 A.C540 A.G553 C-G WC 19-XIX cWW cW-W 3 A.A541 A.U552 A-U WC 20-XX cWW cW-W 4 A.C542 A.G551 C-G WC 19-XIX cWW cW-W 5 A.G543 A.C550 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#37[#35] bps=6 strand-1 5'-GUCAGC-3' bp-type |||||| strand-2 3'-CAGUCG-5' helix-form AAAAA 1 A.G579 A.C1261 G-C WC 19-XIX cWW cW-W 2 A.U580 A.A1260 U-A WC 20-XX cWW cW-W 3 A.C581 A.G1259 C-G WC 19-XIX cWW cW-W 4 A.A582 A.U1258 A-U WC 20-XX cWW cW-W 5 A.G583 A.C1257 G-C WC 19-XIX cWW cW-W 6 A.C584 A.G1256 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#38[#21] bps=13 strand-1 5'-UAUAUUCUGUAGC-3' bp-type ||||||||||||| strand-2 3'-AUAUGGGACGUUG-5' helix-form AAA..AAAAAAA 1 A.U589 A.A668 U-A WC 20-XX cWW cW-W 2 A.A590 A.U667 A-U WC 20-XX cWW cW-W 3 A.U591 A.A666 U-A WC 20-XX cWW cW-W 4 A.A592 A.U665 A-U WC 20-XX cWW cW-W 5 A.U593 A.G664 U-G Wobble 28-XXVIII cWW cW-W 6 A.U594 A.G663 U-G Wobble 28-XXVIII cWW cW-W 7 A.C595 A.G662 C-G WC 19-XIX cWW cW-W 8 A.U596 A.A661 U-A WC 20-XX cWW cW-W 9 A.G597 A.C660 G-C WC 19-XIX cWW cW-W 10 A.U598 A.G659 U-G Wobble 28-XXVIII cWW cW-W 11 A.A599 A.U658 A-U WC 20-XX cWW cW-W 12 A.G600 A.U657 G-U Wobble 28-XXVIII cWW cW-W 13 A.C601 A.G656 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#39[#22] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G604 A.C624 G-C WC 19-XIX cWW cW-W 2 A.G605 A.C623 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#40[#22] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C610 A.G618 C-G WC 19-XIX cWW cW-W 2 A.C611 A.G617 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#41[#23] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G628 A.C635 G-C WC 19-XIX cWW cW-W 2 A.G629 A.C634 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#42[#24] bps=4 strand-1 5'-GUCU-3' bp-type |||| strand-2 3'-CGGG-5' helix-form ..A 1 A.G638 A.C650 G-C WC 19-XIX cWW cW-W 2 A.U639 A.G649 U-G Wobble 28-XXVIII cWW cW-W 3 A.C640 A.G648 C-G WC 19-XIX cWW cW-W 4 A.U641 A.G647 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#43[#20] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C671 A.G809 C-G WC 19-XIX cWW cW-W 2 A.C672 A.G808 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#44[#20] bps=6 strand-1 5'-CCCGGU-3' bp-type |||||| strand-2 3'-GGGCCA-5' helix-form AAAAA 1 A.C678 A.G799 C-G WC 19-XIX cWW cW-W 2 A.C679 A.G798 C-G WC 19-XIX cWW cW-W 3 A.C680 A.G797 C-G WC 19-XIX cWW cW-W 4 A.G681 A.C796 G-C WC 19-XIX cWW cW-W 5 A.G682 A.C795 G-C WC 19-XIX cWW cW-W 6 A.U683 A.A794 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#45[#25] bps=6 strand-1 5'-AGCCAU-3' bp-type |||||| strand-2 3'-UCGGUG-5' helix-form AAAA. 1 A.A689 A.U773 A-U WC 20-XX cWW cW-W 2 A.G690 A.C772 G-C WC 19-XIX cWW cW-W 3 A.C691 A.G771 C-G WC 19-XIX cWW cW-W 4 A.C692 A.G770 C-G WC 19-XIX cWW cW-W 5 A.A693 A.U769 A-U WC 20-XX cWW cW-W 6 A.U694 A.G768 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#46[#25] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-UC-5' helix-form A 1 A.G696 A.U766 G-U Wobble 28-XXVIII cWW cW-W 2 A.G697 A.C765 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#47[#26] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form AA 1 A.G700 A.C732 G-C WC 19-XIX cWW cW-W 2 A.G701 A.C731 G-C WC 19-XIX cWW cW-W 3 A.U702 A.A730 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#48[#26] bps=6 strand-1 5'-GGUUGG-3' bp-type |||||| strand-2 3'-UCAAUC-5' helix-form AAAA. 1 A.G707 A.U724 G-U Wobble 28-XXVIII cWW cW-W 2 A.G708 A.C723 G-C WC 19-XIX cWW cW-W 3 A.U709 A.A722 U-A WC 20-XX cWW cW-W 4 A.U710 A.A721 U-A WC 20-XX cWW cW-W 5 A.G711 A.U720 G-U Wobble 28-XXVIII cWW cW-W 6 A.G712 A.C719 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#49[#26] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C736 A.G760 C-G WC 19-XIX cWW cW-W 2 A.C737 A.G759 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#50[#26] bps=5 strand-1 5'-CUAAU-3' bp-type ||||| strand-2 3'-GAUUA-5' helix-form AAA. 1 A.C740 A.G757 C-G WC 19-XIX cWW cW-W 2 A.U741 A.A756 U-A WC 20-XX cWW cW-W 3 A.A742 A.U755 A-U WC 20-XX cWW cW-W 4 A.A743 A.U754 A-U WC 20-XX cWW cW-W 5 A.U744 A.A753 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#51[#20] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G777 A.C787 G-C WC 19-XIX cWW cW-W 2 A.G778 A.C786 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#52[#28] bps=6 strand-1 5'-CUCCCC-3' bp-type |||||| strand-2 3'-GAGGGG-5' helix-form .AA.A 1 A.C812 A.G1195 C-G WC 19-XIX cWW cW-W 2 A.U813 A.A1194 U-A WC 20-XX cWW cW-W 3 A.C814 A.G1193 C-G WC 19-XIX cWW cW-W 4 A.C815 A.G1192 C-G WC 19-XIX cWW cW-W 5 A.C816 A.G1191 C-G WC 19-XIX cWW cW-W 6 A.C817 A.G1190 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#53[#27] bps=5 strand-1 5'-GCUAU-3' bp-type ||||| strand-2 3'-CGAUG-5' helix-form AA.. 1 A.G822 A.C835 G-C WC 19-XIX cWW cW-W 2 A.C823 A.G834 C-G WC 19-XIX cWW cW-W 3 A.U824 A.A833 U-A WC 20-XX cWW cW-W 4 A.A825 A.U832 A-U WC 20-XX cWW cW-W 5 A.U826 A.G831 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#54[#27] bps=7 strand-1 5'-CUCGUGA-3' bp-type ||||||| strand-2 3'-GGGCACU-5' helix-form AAAAAA 1 A.C838 A.G940 C-G WC 19-XIX cWW cW-W 2 A.U839 A.G939 U-G Wobble 28-XXVIII cWW cW-W 3 A.C840 A.G938 C-G WC 19-XIX cWW cW-W 4 A.G841 A.C937 G-C WC 19-XIX cWW cW-W 5 A.U842 A.A936 U-A WC 20-XX cWW cW-W 6 A.G843 A.C935 G-C WC 19-XIX cWW cW-W 7 A.A844 A.U934 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#55[#27] bps=3 strand-1 5'-CAU-3' bp-type ||| strand-2 3'-GUA-5' helix-form AA 1 A.C848 A.G930 C-G WC 19-XIX cWW cW-W 2 A.A849 A.U929 A-U WC 20-XX cWW cW-W 3 A.U850 A.A928 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#56[#27] bps=6 strand-1 5'-CUCCGG-3' bp-type |||||| strand-2 3'-GAGGCC-5' helix-form .AAA. 1 A.C851 A.G926 C-G WC 19-XIX cWW cW-W 2 A.U852 A.A925 U-A WC 20-XX cWW cW-W 3 A.C853 A.G924 C-G WC 19-XIX cWW cW-W 4 A.C854 A.G923 C-G WC 19-XIX cWW cW-W 5 A.G855 A.C922 G-C WC 19-XIX cWW cW-W 6 A.G856 A.C921 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#57[#27] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.A863 A.U913 A-U WC 20-XX cWW cW-W 2 A.G864 A.C912 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#58[#28] bps=4 strand-1 5'-CACG-3' bp-type |||| strand-2 3'-GUGC-5' helix-form AAA 1 A.C946 A.G971 C-G WC 19-XIX cWW cW-W 2 A.A947 A.U970 A-U WC 20-XX cWW cW-W 3 A.C948 A.G969 C-G WC 19-XIX cWW cW-W 4 A.G949 A.C968 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#59[#28] bps=3 strand-1 5'-CGG-3' bp-type ||| strand-2 3'-GCC-5' helix-form AA 1 A.C951 A.G966 C-G WC 19-XIX cWW cW-W 2 A.G952 A.C965 G-C WC 19-XIX cWW cW-W 3 A.G953 A.C964 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#60[#29] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form AA 1 A.G976 A.C987 G-C WC 19-XIX cWW cW-W 2 A.G977 A.C986 G-C WC 19-XIX cWW cW-W 3 A.G978 A.C985 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#61[#33] bps=4 strand-1 5'-CCGC-3' bp-type |||| strand-2 3'-GGCG-5' helix-form AA. 1 A.C991 A.G1163 C-G WC 19-XIX cWW cW-W 2 A.C992 A.G1162 C-G WC 19-XIX cWW cW-W 3 A.G993 A.C1161 G-C WC 19-XIX cWW cW-W 4 A.C994 A.G1160 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#62[#33] bps=3 strand-1 5'-AGC-3' bp-type ||| strand-2 3'-UCG-5' helix-form A. 1 A.A996 A.U1159 A-U WC 20-XX cWW cW-W 2 A.G997 A.C1158 G-C WC 19-XIX cWW cW-W 3 A.C998 A.G1157 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#63[#33] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form AA 1 A.G1002 A.C1153 G-C WC 19-XIX cWW cW-W 2 A.G1003 A.C1152 G-C WC 19-XIX cWW cW-W 3 A.U1004 A.A1151 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#64[#30] bps=3 strand-1 5'-CCC-3' bp-type ||| strand-2 3'-GGG-5' helix-form AA 1 A.C1005 A.G1138 C-G WC 19-XIX cWW cW-W 2 A.C1006 A.G1137 C-G WC 19-XIX cWW cW-W 3 A.C1007 A.G1136 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#65[#33] bps=6 strand-1 5'-CAUGGU-3' bp-type |||||| strand-2 3'-GUACCA-5' helix-form .AA.A 1 A.C1013 A.G1149 C-G WC 19-XIX cWW cW-W 2 A.A1014 A.U1148 A-U WC 20-XX cWW cW-W 3 A.U1015 A.A1147 U-A WC 20-XX cWW cW-W 4 A.G1016 A.C1146 G-C WC 19-XIX cWW cW-W 5 A.G1017 A.C1145 G-C WC 19-XIX cWW cW-W 6 A.U1018 A.A1144 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#66[#32] bps=2 strand-1 5'-CG-3' bp-type || strand-2 3'-GC-5' helix-form . 1 A.C1030 A.G1124 C-G WC 19-XIX cWW cW-W 2 A.G1031 A.C1123 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#67[#33] bps=5 strand-1 5'-CAGCG-3' bp-type ||||| strand-2 3'-GUUGU-5' helix-form .AA. 1 A.C1164 A.G1185 C-G WC 19-XIX cWW cW-W 2 A.A1165 A.U1184 A-U WC 20-XX cWW cW-W 3 A.G1166 A.U1183 G-U Wobble 28-XXVIII cWW cW-W 4 A.C1167 A.G1182 C-G WC 19-XIX cWW cW-W 5 A.G1168 A.U1181 G-U Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#68[#33] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G1171 A.C1178 G-C WC 19-XIX cWW cW-W 2 A.C1172 A.G1177 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#69[#28] bps=2 strand-1 5'-CG-3' bp-type || strand-2 3'-GU-5' helix-form . 1 A.C1196 A.G1250 C-G WC 19-XIX cWW cW-W 2 A.G1197 A.U1249 G-U Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#70[#28] bps=5 strand-1 5'-UUCUG-3' bp-type ||||| strand-2 3'-AAGAC-5' helix-form .AA. 1 A.U1198 A.A1247 U-A WC 20-XX cWW cW-W 2 A.U1199 A.A1246 U-A WC 20-XX cWW cW-W 3 A.C1200 A.G1245 C-G WC 19-XIX cWW cW-W 4 A.U1201 A.A1244 U-A WC 20-XX cWW cW-W 5 A.G1202 A.C1243 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#71[#28] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-UGG-5' helix-form .A 1 A.G1206 A.U1240 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1207 A.G1239 C-G WC 19-XIX cWW cW-W 3 A.C1208 A.G1238 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#72[#34] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-UC-5' helix-form A 1 A.G1215 A.U1234 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1216 A.C1233 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#73[#34] bps=5 strand-1 5'-GUGCU-3' bp-type ||||| strand-2 3'-UACGG-5' helix-form .AAA 1 A.G1218 A.U1231 G-U Wobble 28-XXVIII cWW cW-W 2 A.U1219 A.A1230 U-A WC 20-XX cWW cW-W 3 A.G1220 A.C1229 G-C WC 19-XIX cWW cW-W 4 A.C1221 A.G1228 C-G WC 19-XIX cWW cW-W 5 A.U1222 A.G1227 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#74[#35] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form A 1 A.A1269 A.U2011 A-U WC 20-XX cWW cW-W 2 A.C1270 A.G2010 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#75[#36] bps=6 strand-1 5'-AGCGGG-3' bp-type |||||| strand-2 3'-UCGCCC-5' helix-form AAAA. 1 A.A1276 A.U1294 A-U WC 20-XX cWW cW-W 2 A.G1277 A.C1293 G-C WC 19-XIX cWW cW-W 3 A.C1278 A.G1292 C-G WC 19-XIX cWW cW-W 4 A.G1279 A.C1291 G-C WC 19-XIX cWW cW-W 5 A.G1280 A.C1290 G-C WC 19-XIX cWW cW-W 6 A.G1281 A.C1289 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#76[#36] bps=4 strand-1 5'-CGCC-3' bp-type |||| strand-2 3'-GCGG-5' helix-form ..A 1 A.C1295 A.G1645 C-G WC 19-XIX cWW cW-W 2 A.G1296 A.C1644 G-C WC 19-XIX cWW cW-W 3 A.C1297 A.G1643 C-G WC 19-XIX cWW cW-W 4 A.C1298 A.G1642 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#77[#37] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-CU-5' helix-form A 1 A.G1303 A.C1625 G-C WC 19-XIX cWW cW-W 2 A.A1304 A.U1624 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#78[#38] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G1309 A.C1605 G-C WC 19-XIX cWW cW-W 2 A.G1310 A.C1604 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#79[#39] bps=6 strand-1 5'-CCUGUC-3' bp-type |||||| strand-2 3'-GGACGG-5' helix-form AAAAA 1 A.C1314 A.G1338 C-G WC 19-XIX cWW cW-W 2 A.C1315 A.G1337 C-G WC 19-XIX cWW cW-W 3 A.U1316 A.A1336 U-A WC 20-XX cWW cW-W 4 A.G1317 A.C1335 G-C WC 19-XIX cWW cW-W 5 A.U1318 A.G1334 U-G Wobble 28-XXVIII cWW cW-W 6 A.C1319 A.G1333 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#80[#41] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form A 1 A.G1343 A.C1404 G-C WC 19-XIX cWW cW-W 2 A.U1344 A.A1403 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#81[#40] bps=3 strand-1 5'-CGA-3' bp-type ||| strand-2 3'-GCU-5' helix-form .. 1 A.C1345 A.G1601 C-G WC 19-XIX cWW cW-W 2 A.G1346 A.C1600 G-C WC 19-XIX cWW cW-W 3 A.A1347 A.U1599 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#82[#40] bps=3 strand-1 5'-CCC-3' bp-type ||| strand-2 3'-GGG-5' helix-form AA 1 A.C1349 A.G1382 C-G WC 19-XIX cWW cW-W 2 A.C1350 A.G1381 C-G WC 19-XIX cWW cW-W 3 A.C1351 A.G1380 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#83[#40] bps=3 strand-1 5'-GGC-3' bp-type ||| strand-2 3'-CUG-5' helix-form .. 1 A.G1355 A.C1376 G-C WC 19-XIX cWW cW-W 2 A.G1356 A.U1375 G-U Wobble 28-XXVIII cWW cW-W 3 A.C1357 A.G1374 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#84[#40] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form .A 1 A.G1361 A.C1370 G-C WC 19-XIX cWW cW-W 2 A.C1362 A.G1369 C-G WC 19-XIX cWW cW-W 3 A.C1363 A.G1368 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#85[#41] bps=5 strand-1 5'-ACAGG-3' bp-type ||||| strand-2 3'-UGUCC-5' helix-form .AAA 1 A.A1385 A.U1402 A-U WC 20-XX cWW cW-W 2 A.C1386 A.G1401 C-G WC 19-XIX cWW cW-W 3 A.A1387 A.U1400 A-U WC 20-XX cWW cW-W 4 A.G1388 A.C1399 G-C WC 19-XIX cWW cW-W 5 A.G1389 A.C1398 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#86[#41] bps=3 strand-1 5'-UUG-3' bp-type ||| strand-2 3'-AAC-5' helix-form .A 1 A.U1405 A.A1597 U-A WC 20-XX cWW cW-W 2 A.U1406 A.A1596 U-A WC 20-XX cWW cW-W 3 A.G1407 A.C1595 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#87[#41] bps=7 strand-1 5'-UGUUACU-3' bp-type ||||||| strand-2 3'-ACAAUGG-5' helix-form AAA... 1 A.U1409 A.A1593 U-A WC 20-XX cWW cW-W 2 A.G1410 A.C1592 G-C WC 19-XIX cWW cW-W 3 A.U1411 A.A1591 U-A WC 20-XX cWW cW-W 4 A.U1412 A.A1590 U-A WC 20-XX cWW cW-W 5 A.A1413 A.U1589 A-U WC 20-XX cWW cW-W 6 A.C1414 A.G1588 C-G WC 19-XIX cWW cW-W 7 A.U1415 A.G1587 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#88[#42] bps=4 strand-1 5'-GGGG-3' bp-type |||| strand-2 3'-CUCC-5' helix-form AAA 1 A.G1421 A.C1577 G-C WC 19-XIX cWW cW-W 2 A.G1422 A.U1576 G-U Wobble 28-XXVIII cWW cW-W 3 A.G1423 A.C1575 G-C WC 19-XIX cWW cW-W 4 A.G1424 A.C1574 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#89[#43] bps=4 strand-1 5'-GGAG-3' bp-type |||| strand-2 3'-CUUC-5' helix-form AAA 1 A.G1429 A.C1564 G-C WC 19-XIX cWW cW-W 2 A.G1430 A.U1563 G-U Wobble 28-XXVIII cWW cW-W 3 A.A1431 A.U1562 A-U WC 20-XX cWW cW-W 4 A.G1432 A.C1561 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#90[#43] bps=3 strand-1 5'-GGC-3' bp-type ||| strand-2 3'-CCG-5' helix-form AA 1 A.G1435 A.C1557 G-C WC 19-XIX cWW cW-W 2 A.G1436 A.C1556 G-C WC 19-XIX cWW cW-W 3 A.C1437 A.G1555 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#91[#43] bps=5 strand-1 5'-UGUUG-3' bp-type ||||| strand-2 3'-ACAAC-5' helix-form AAAA 1 A.U1440 A.A1551 U-A WC 20-XX cWW cW-W 2 A.G1441 A.C1550 G-C WC 19-XIX cWW cW-W 3 A.U1442 A.A1549 U-A WC 20-XX cWW cW-W 4 A.U1443 A.A1548 U-A WC 20-XX cWW cW-W 5 A.G1444 A.C1547 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#92[#43] bps=6 strand-1 5'-GCCGGG-3' bp-type |||||| strand-2 3'-UGGCCC-5' helix-form .AAAA 1 A.G1445 A.U1466 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1446 A.G1465 C-G WC 19-XIX cWW cW-W 3 A.C1447 A.G1464 C-G WC 19-XIX cWW cW-W 4 A.G1448 A.C1463 G-C WC 19-XIX cWW cW-W 5 A.G1449 A.C1462 G-C WC 19-XIX cWW cW-W 6 A.G1450 A.C1461 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#93[#56] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCG-5' helix-form AA 1 A.G1455 A.C2704 G-C WC 19-XIX cWW cW-W 2 A.G1456 A.C2703 G-C WC 19-XIX cWW cW-W 3 A.U1457 A.G2702 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#94[#45] bps=4 strand-1 5'-GCGU-3' bp-type |||| strand-2 3'-UGCG-5' helix-form AA. 1 A.G1471 A.U1520 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1472 A.G1519 C-G WC 19-XIX cWW cW-W 3 A.G1473 A.C1518 G-C WC 19-XIX cWW cW-W 4 A.U1474 A.G1517 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#95[#45] bps=3 strand-1 5'-GCU-3' bp-type ||| strand-2 3'-CGG-5' helix-form A. 1 A.G1479 A.C1512 G-C WC 19-XIX cWW cW-W 2 A.C1480 A.G1511 C-G WC 19-XIX cWW cW-W 3 A.U1481 A.G1510 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#96[#44] bps=6 strand-1 5'-UUUUCC-3' bp-type |||||| strand-2 3'-AAAAGG-5' helix-form A..AA 1 A.U1484 A.A1505 U-A WC 20-XX cWW cW-W 2 A.U1485 A.A1504 U-A WC 20-XX cWW cW-W 3 A.U1486 A.A1503 U-A WC 20-XX cWW cW-W 4 A.U1487 A.A1502 U-A WC 20-XX cWW cW-W 5 A.C1488 A.G1501 C-G WC 19-XIX cWW cW-W 6 A.C1489 A.G1500 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#97[#44] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G1491 A.C1499 G-C WC 19-XIX cWW cW-W 2 A.G1492 A.C1498 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#98[#45] bps=5 strand-1 5'-GGCAC-3' bp-type ||||| strand-2 3'-UCGUG-5' helix-form .AAA 1 A.G1529 A.U1542 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1530 A.C1541 G-C WC 19-XIX cWW cW-W 3 A.C1531 A.G1540 C-G WC 19-XIX cWW cW-W 4 A.A1532 A.U1539 A-U WC 20-XX cWW cW-W 5 A.C1533 A.G1538 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#99[#37] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C1611 A.G1620 C-G WC 19-XIX cWW cW-W 2 A.C1612 A.G1619 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#100[#36] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G1627 A.C1639 G-C WC 19-XIX cWW cW-W 2 A.G1628 A.C1638 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#101[#35] bps=4 strand-1 5'-UGAG-3' bp-type |||| strand-2 3'-ACUC-5' helix-form .AA 1 A.U1648 A.A2009 U-A WC 20-XX cWW cW-W 2 A.G1649 A.C2008 G-C WC 19-XIX cWW cW-W 3 A.A1650 A.U2007 A-U WC 20-XX cWW cW-W 4 A.G1651 A.C2006 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#102[#46] bps=8 strand-1 5'-CUCGGGUG-3' bp-type |||||||| strand-2 3'-GAGCCCAC-5' helix-form AAA.AA. 1 A.C1656 A.G2004 C-G WC 19-XIX cWW cW-W 2 A.U1657 A.A2003 U-A WC 20-XX cWW cW-W 3 A.C1658 A.G2002 C-G WC 19-XIX cWW cW-W 4 A.G1659 A.C2001 G-C WC 19-XIX cWW cW-W 5 A.G1660 A.C2000 G-C WC 19-XIX cWW cW-W 6 A.G1661 A.C1999 G-C WC 19-XIX cWW cW-W 7 A.U1662 A.A1998 U-A WC 20-XX cWW cW-W 8 A.G1663 A.C1997 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#103[#46] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.A1665 A.U1995 A-U WC 20-XX cWW cW-W 2 A.G1666 A.C1994 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#104[#47] bps=5 strand-1 5'-GUGCC-3' bp-type ||||| strand-2 3'-CACGG-5' helix-form AAAA 1 A.G1682 A.C1706 G-C WC 19-XIX cWW cW-W 2 A.U1683 A.A1705 U-A WC 20-XX cWW cW-W 3 A.G1684 A.C1704 G-C WC 19-XIX cWW cW-W 4 A.C1685 A.G1703 C-G WC 19-XIX cWW cW-W 5 A.C1686 A.G1702 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#105[#48] bps=6 strand-1 5'-GCUGAU-3' bp-type |||||| strand-2 3'-UGACUA-5' helix-form AAAA. 1 A.G1707 A.U1751 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1708 A.G1750 C-G WC 19-XIX cWW cW-W 3 A.U1709 A.A1749 U-A WC 20-XX cWW cW-W 4 A.G1710 A.C1748 G-C WC 19-XIX cWW cW-W 5 A.A1711 A.U1747 A-U WC 20-XX cWW cW-W 6 A.U1712 A.A1746 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#106[#48] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-UCG-5' helix-form .. 1 A.G1718 A.U1742 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1719 A.C1741 G-C WC 19-XIX cWW cW-W 3 A.U1720 A.G1740 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#107[#48] bps=3 strand-1 5'-GUC-3' bp-type ||| strand-2 3'-UAG-5' helix-form .. 1 A.G1724 A.U1736 G-U Wobble 28-XXVIII cWW cW-W 2 A.U1725 A.A1735 U-A WC 20-XX cWW cW-W 3 A.C1726 A.G1734 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#108[#46] bps=7 strand-1 5'-CUGGCUG-3' bp-type ||||||| strand-2 3'-GACCGGU-5' helix-form A..... 1 A.C1764 A.G1988 C-G WC 19-XIX cWW cW-W 2 A.U1765 A.A1987 U-A WC 20-XX cWW cW-W 3 A.G1766 A.C1986 G-C WC 19-XIX cWW cW-W 4 A.G1767 A.C1985 G-C WC 19-XIX cWW cW-W 5 A.C1768 A.G1984 C-G WC 19-XIX cWW cW-W 6 A.U1769 A.G1983 U-G Wobble 28-XXVIII cWW cW-W 7 A.G1770 A.U1982 G-U Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#109[#46] bps=2 strand-1 5'-CA-3' bp-type || strand-2 3'-GU-5' helix-form . 1 A.C1771 A.G1980 C-G WC 19-XIX cWW cW-W 2 A.A1772 A.U1979 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#110[#49] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form . 1 A.G1776 A.C1788 G-C WC 19-XIX cWW cW-W 2 A.U1777 A.A1787 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#111[#50] bps=4 strand-1 5'-GCAC-3' bp-type |||| strand-2 3'-UGUG-5' helix-form .A. 1 A.G1792 A.U1827 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1793 A.G1826 C-G WC 19-XIX cWW cW-W 3 A.A1794 A.U1825 A-U WC 20-XX cWW cW-W 4 A.C1795 A.G1824 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#112[#50] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form A 1 A.G1797 A.C1822 G-C WC 19-XIX cWW cW-W 2 A.U1798 A.A1821 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#113[#51] bps=3 strand-1 5'-CAC-3' bp-type ||| strand-2 3'-GUG-5' helix-form .. 1 A.C1804 A.G1813 C-G WC 19-XIX cWW cW-W 2 A.A1805 A.U1812 A-U WC 20-XX cWW cW-W 3 A.C1806 A.G1811 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#114[#52] bps=4 strand-1 5'-CGCC-3' bp-type |||| strand-2 3'-GCGG-5' helix-form .A. 1 A.C1830 A.G1975 C-G WC 19-XIX cWW cW-W 2 A.G1831 A.C1974 G-C WC 19-XIX cWW cW-W 3 A.C1832 A.G1973 C-G WC 19-XIX cWW cW-W 4 A.C1833 A.G1972 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#115[#17] bps=5 strand-1 5'-CGCUG-3' bp-type ||||| strand-2 3'-GUGAC-5' helix-form ..A. 1 A.C2023 A.G2040 C-G WC 19-XIX cWW cW-W 2 A.G2024 A.U2039 G-U Wobble 28-XXVIII cWW cW-W 3 A.C2025 A.G2038 C-G WC 19-XIX cWW cW-W 4 A.U2026 A.A2037 U-A WC 20-XX cWW cW-W 5 A.G2027 A.C2036 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#116[#54] bps=3 strand-1 5'-CCC-3' bp-type ||| strand-2 3'-GGG-5' helix-form AA 1 A.C2043 A.G2625 C-G WC 19-XIX cWW cW-W 2 A.C2044 A.G2624 C-G WC 19-XIX cWW cW-W 3 A.C2045 A.G2623 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#117[#54] bps=5 strand-1 5'-GCGGC-3' bp-type ||||| strand-2 3'-UGCCG-5' helix-form AAAA 1 A.G2046 A.U2622 G-U Wobble 28-XXVIII cWW cW-W 2 A.C2047 A.G2621 C-G WC 19-XIX cWW cW-W 3 A.G2048 A.C2620 G-C WC 19-XIX cWW cW-W 4 A.G2049 A.C2619 G-C WC 19-XIX cWW cW-W 5 A.C2050 A.G2618 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#118[#54] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form A 1 A.A2052 A.U2617 A-U WC 20-XX cWW cW-W 2 A.G2053 A.C2616 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#119[#53] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G2056 A.C2612 G-C WC 19-XIX cWW cW-W 2 A.G2057 A.C2611 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#120[#57] bps=7 strand-1 5'-GGAGAAC-3' bp-type ||||||| strand-2 3'-CCUCUUG-5' helix-form A.AAA. 1 A.G2630 A.C2788 G-C WC 19-XIX cWW cW-W 2 A.G2631 A.C2787 G-C WC 19-XIX cWW cW-W 3 A.A2632 A.U2786 A-U WC 20-XX cWW cW-W 4 A.G2633 A.C2785 G-C WC 19-XIX cWW cW-W 5 A.A2634 A.U2784 A-U WC 20-XX cWW cW-W 6 A.A2635 A.U2783 A-U WC 20-XX cWW cW-W 7 A.C2636 A.G2782 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#121[#57] bps=4 strand-1 5'-GGGG-3' bp-type |||| strand-2 3'-CCCC-5' helix-form AAA 1 A.G2640 A.C2774 G-C WC 19-XIX cWW cW-W 2 A.G2641 A.C2773 G-C WC 19-XIX cWW cW-W 3 A.G2642 A.C2772 G-C WC 19-XIX cWW cW-W 4 A.G2643 A.C2771 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#122[#55] bps=4 strand-1 5'-CUCC-3' bp-type |||| strand-2 3'-GAGG-5' helix-form AAA 1 A.C2649 A.G2671 C-G WC 19-XIX cWW cW-W 2 A.U2650 A.A2670 U-A WC 20-XX cWW cW-W 3 A.C2651 A.G2669 C-G WC 19-XIX cWW cW-W 4 A.C2652 A.G2668 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#123[#55] bps=5 strand-1 5'-CGCAU-3' bp-type ||||| strand-2 3'-GCGUA-5' helix-form AA.A 1 A.C2676 A.G2731 C-G WC 19-XIX cWW cW-W 2 A.G2677 A.C2730 G-C WC 19-XIX cWW cW-W 3 A.C2678 A.G2729 C-G WC 19-XIX cWW cW-W 4 A.A2679 A.U2728 A-U WC 20-XX cWW cW-W 5 A.U2680 A.A2727 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#124[#55] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G2686 A.C2723 G-C WC 19-XIX cWW cW-W 2 A.U2687 A.G2722 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#125[#56] bps=5 strand-1 5'-CGGGU-3' bp-type ||||| strand-2 3'-GCCCG-5' helix-form AA.. 1 A.C2691 A.G2718 C-G WC 19-XIX cWW cW-W 2 A.G2692 A.C2717 G-C WC 19-XIX cWW cW-W 3 A.G2693 A.C2716 G-C WC 19-XIX cWW cW-W 4 A.G2694 A.C2715 G-C WC 19-XIX cWW cW-W 5 A.U2695 A.G2714 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#126[#56] bps=6 strand-1 5'-UGUCAU-3' bp-type |||||| strand-2 3'-ACGGUA-5' helix-form AAAAA 1 A.U2696 A.A2711 U-A WC 20-XX cWW cW-W 2 A.G2697 A.C2710 G-C WC 19-XIX cWW cW-W 3 A.U2698 A.G2709 U-G Wobble 28-XXVIII cWW cW-W 4 A.C2699 A.G2708 C-G WC 19-XIX cWW cW-W 5 A.A2700 A.U2707 A-U WC 20-XX cWW cW-W 6 A.U2701 A.A2706 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#127[#57] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.A2736 A.U2768 A-U WC 20-XX cWW cW-W 2 A.G2737 A.C2767 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#128[#57] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G2744 A.C2760 G-C WC 19-XIX cWW cW-W 2 A.C2745 A.G2759 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#129[#58] bps=5 strand-1 5'-GACCC-3' bp-type ||||| strand-2 3'-CUGGG-5' helix-form AAAA 1 A.G2791 A.C2805 G-C WC 19-XIX cWW cW-W 2 A.A2792 A.U2804 A-U WC 20-XX cWW cW-W 3 A.C2793 A.G2803 C-G WC 19-XIX cWW cW-W 4 A.C2794 A.G2802 C-G WC 19-XIX cWW cW-W 5 A.C2795 A.G2801 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#130[#59] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G2811 A.C2889 G-C WC 19-XIX cWW cW-W 2 A.G2812 A.C2888 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#131[#59] bps=5 strand-1 5'-CGUUG-3' bp-type ||||| strand-2 3'-GCAGC-5' helix-form A... 1 A.C2815 A.G2831 C-G WC 19-XIX cWW cW-W 2 A.G2816 A.C2830 G-C WC 19-XIX cWW cW-W 3 A.U2817 A.A2829 U-A WC 20-XX cWW cW-W 4 A.U2818 A.G2828 U-G Wobble 28-XXVIII cWW cW-W 5 A.G2819 A.C2827 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#132[#60] bps=3 strand-1 5'-UAG-3' bp-type ||| strand-2 3'-AUC-5' helix-form AA 1 A.U2836 A.A2882 U-A WC 20-XX cWW cW-W 2 A.A2837 A.U2881 A-U WC 20-XX cWW cW-W 3 A.G2838 A.C2880 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#133[#60] bps=5 strand-1 5'-GCCGG-3' bp-type ||||| strand-2 3'-UGGCC-5' helix-form .AAA 1 A.G2839 A.U2878 G-U Wobble 28-XXVIII cWW cW-W 2 A.C2840 A.G2877 C-G WC 19-XIX cWW cW-W 3 A.C2841 A.G2876 C-G WC 19-XIX cWW cW-W 4 A.G2842 A.C2875 G-C WC 19-XIX cWW cW-W 5 A.G2843 A.C2874 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#134[#61] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G2846 A.C2870 G-C WC 19-XIX cWW cW-W 2 A.U2847 A.G2869 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#135[#62] bps=5 strand-1 5'-GCGCA-3' bp-type ||||| strand-2 3'-UGCGU-5' helix-form .AAA 1 A.G2852 A.U2865 G-U Wobble 28-XXVIII cWW cW-W 2 A.C2853 A.G2864 C-G WC 19-XIX cWW cW-W 3 A.G2854 A.C2863 G-C WC 19-XIX cWW cW-W 4 A.C2855 A.G2862 C-G WC 19-XIX cWW cW-W 5 A.A2856 A.U2861 A-U WC 20-XX cWW cW-W **************************************************************************** List of 50 isolated WC/wobble pairs Note: isolated WC/wobble pairs are assigned negative indices to differentiate them from the stem numbers, which are positive. -------------------------------------------------------------------- [#2] -1 A.G24 A.C516 G-C WC 19-XIX cWW cW-W [#2] -2 A.G30 A.C510 G-C WC 19-XIX cWW cW-W -- -3 A.C61 A.G93 C-G WC 19-XIX cWW cW-W -- -4 A.G194 A.C201 G-C WC 19-XIX cWW cW-W -- -5 A.C198 A.G248 C-G WC 19-XIX cWW cW-W [#8] -6 A.C269 A.G370 C-G WC 19-XIX cWW cW-W [#12] -7 A.C305 A.G312 C-G WC 19-XIX cWW cW-W [#13] -8 A.C378 A.G396 C-G WC 19-XIX cWW cW-W -- -9 A.G481 A.C509 G-C WC 19-XIX cWW cW-W [#19] -10 A.C531 A.G2018 C-G WC 19-XIX cWW cW-W [#18] -11 A.G533 A.C560 G-C WC 19-XIX cWW cW-W -- -12 A.U562 A.A2033 U-A WC 20-XX cWW cW-W [#19] -13 A.C564 A.G577 C-G WC 19-XIX cWW cW-W [#19] -14 A.U566 A.A575 U-A WC 20-XX cWW cW-W [#20] -15 A.G674 A.C806 G-C WC 19-XIX cWW cW-W [#25] -16 A.C698 A.G763 C-G WC 19-XIX cWW cW-W [#20] -17 A.G775 A.C791 G-C WC 19-XIX cWW cW-W [#27] -18 A.C837 A.G942 C-G WC 19-XIX cWW cW-W [#27] -19 A.U847 A.A933 U-A WC 20-XX cWW cW-W [#27] -20 A.G862 A.C915 G-C WC 19-XIX cWW cW-W [#28] -21 A.U955 A.G962 U-G Wobble 28-XXVIII cWW cW-W [#33] -22 A.G1011 A.C1150 G-C WC 19-XIX cWW cW-W [#31] -23 A.G1024 A.C1140 G-C WC 19-XIX cWW cW-W [#35] -24 A.A1262 A.U2017 A-U WC 20-XX cWW cW-W [#37] -25 A.C1306 A.G1622 C-G WC 19-XIX cWW cW-W [#38] -26 A.U1313 A.A1603 U-A WC 20-XX cWW cW-W [#39] -27 A.G1324 A.C1330 G-C WC 19-XIX cWW cW-W [#40] -28 A.A1353 A.U1379 A-U WC 20-XX cWW cW-W [#42] -29 A.C1417 A.G1581 C-G WC 19-XIX cWW cW-W [#43] -30 A.C1451 A.G1459 C-G WC 19-XIX cWW cW-W [#45] -31 A.U1467 A.A1525 U-A WC 20-XX cWW cW-W [#44] -32 A.G1482 A.C1507 G-C WC 19-XIX cWW cW-W [#45] -33 A.G1516 A.C1732 G-C WC 19-XIX cWW cW-W [#45] -34 A.C1526 A.G1546 C-G WC 19-XIX cWW cW-W [#43] -35 A.C1565 A.G1568 C-G WC 19-XIX cWW cW-W [#46] -36 A.A1669 A.U1993 A-U WC 20-XX cWW cW-W [#46] -37 A.G1674 A.C1990 G-C WC 19-XIX cWW cW-W [#47] -38 A.C1691 A.G1696 C-G WC 19-XIX cWW cW-W [#52] -39 A.U1693 A.A1829 U-A WC 20-XX cWW cW-W [#48] -40 A.C1728 A.G1733 C-G WC 19-XIX cWW cW-W [#48] -41 A.C1752 A.G1756 C-G WC 19-XIX cWW cW-W [#19] -42 A.A2020 A.U2034 A-U WC 20-XX cWW cW-W [#54] -43 A.C2626 A.G2777 C-G WC 19-XIX cWW cW-W [#55] -44 A.C2646 A.G2674 C-G WC 19-XIX cWW cW-W [#55] -45 A.C2658 A.G2663 C-G WC 19-XIX cWW cW-W [#55] -46 A.U2684 A.A2725 U-A WC 20-XX cWW cW-W [#57] -47 A.G2742 A.C2762 G-C WC 19-XIX cWW cW-W [#57] -48 A.C2789 A.G2894 C-G WC 19-XIX cWW cW-W [#58] -49 A.U2796 A.A2799 U-A WC 20-XX cWW cW-W [#58] -50 A.C2806 A.G2892 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 35 coaxial stacks 1 Helix#2 contains 5 stems: [#2,#3,#4,#5,#16] 2 Helix#4 contains 3 stems: [#7,#8,#9] 3 Helix#5 contains 3 stems: [#10,#11,#12] 4 Helix#6 contains 2 stems: [#13,#14] 5 Helix#10 contains 2 stems: [#18,#19] 6 Helix#11 contains 6 stems: [#21,#22,#23,#24,#25,#28] 7 Helix#12 contains 2 stems: [#27,#26] 8 Helix#13 contains 2 stems: [#29,#30] 9 Helix#14 contains 2 stems: [#31,#32] 10 Helix#18 contains 2 stems: [#35,#36] 11 Helix#20 contains 3 stems: [#43,#44,#51] 12 Helix#22 contains 2 stems: [#39,#40] 13 Helix#25 contains 2 stems: [#45,#46] 14 Helix#26 contains 4 stems: [#48,#47,#49,#50] 15 Helix#27 contains 5 stems: [#53,#54,#55,#56,#57] 16 Helix#28 contains 6 stems: [#59,#58,#52,#69,#70,#71] 17 Helix#33 contains 6 stems: [#65,#63,#62,#61,#67,#68] 18 Helix#34 contains 2 stems: [#72,#73] 19 Helix#35 contains 3 stems: [#37,#74,#101] 20 Helix#36 contains 3 stems: [#75,#76,#100] 21 Helix#37 contains 2 stems: [#77,#99] 22 Helix#40 contains 4 stems: [#81,#82,#83,#84] 23 Helix#41 contains 4 stems: [#85,#80,#86,#87] 24 Helix#43 contains 4 stems: [#92,#91,#90,#89] 25 Helix#44 contains 2 stems: [#96,#97] 26 Helix#45 contains 3 stems: [#95,#94,#98] 27 Helix#46 contains 4 stems: [#102,#103,#108,#109] 28 Helix#48 contains 3 stems: [#107,#106,#105] 29 Helix#50 contains 2 stems: [#111,#112] 30 Helix#54 contains 3 stems: [#118,#117,#116] 31 Helix#55 contains 3 stems: [#122,#123,#124] 32 Helix#56 contains 3 stems: [#125,#126,#93] 33 Helix#57 contains 4 stems: [#128,#127,#121,#120] 34 Helix#59 contains 2 stems: [#130,#131] 35 Helix#60 contains 2 stems: [#132,#133] **************************************************************************** List of 415 base stacks Note: a stack is an ordered list of nucleotides assembled together via base-stacking interactions, regardless of backbone connectivity. Stacking interactions within a stem are *not* included. 1 nts=2 AG A.A14,A.G15 2 nts=2 GG A.G23,A.G518 3 nts=2 GD A.G24,S.ASP77 4 nts=2 UG A.U25,A.G26 5 nts=2 GC A.G36,A.C37 6 nts=2 GG A.G46,A.G180 7 nts=2 CG A.C47,A.G48 8 nts=2 GU A.G58,A.U59 9 nts=2 AA A.A63,A.A64 10 nts=2 CU A.C66,A.U67 11 nts=2 GU A.G70,A.U114 12 nts=2 AA A.A71,A.A73 13 nts=2 GC A.G75,A.C76 14 nts=2 UA A.U90,A.A91 15 nts=2 GA A.G121,A.A131 16 nts=2 UG A.U158,A.G159 17 nts=2 AA A.A160,A.A161 18 nts=2 AG A.A167,A.G168 19 nts=2 AU A.A222,A.U224 20 nts=2 CA A.C225,A.A226 21 nts=2 AG A.A231,A.G232 22 nts=2 AG A.A262,A.G263 23 nts=2 CC A.C268,A.C269 24 nts=2 CC A.C274,A.C275 25 nts=2 AU A.A279,A.U280 26 nts=2 GU A.G289,A.U290 27 nts=2 UU A.U292,A.U293 28 nts=2 AA A.A294,A.A345 29 nts=2 GA A.G295,A.A344 30 nts=2 GG A.G297,A.G298 31 nts=2 GG A.G301,A.G317 32 nts=2 AG A.A324,A.G325 33 nts=2 AC A.A332,A.C335 34 nts=2 AC A.A352,A.C353 35 nts=2 AC A.A384,A.C385 36 nts=2 CU A.C394,A.U395 37 nts=2 AG A.A404,A.G406 38 nts=2 AC A.A412,A.C413 39 nts=2 UC A.U419,A.C420 40 nts=2 GC A.G442,A.C444 41 nts=2 AR A.A443,E.ARG40 42 nts=2 CG A.C445,A.G446 43 nts=2 AG A.A449,A.G450 44 nts=2 AU A.A457,A.U459 45 nts=2 GG A.G463,A.G467 46 nts=2 GG A.G468,A.G469 47 nts=2 CG A.C475,A.G476 48 nts=2 AC A.A483,A.C484 49 nts=2 CG A.C487,A.G488 50 nts=2 AC A.A532,A.C2021 51 nts=2 AU A.A575,A.U576 52 nts=2 GG A.G577,A.G578 53 nts=2 AA A.A586,A.A1254 54 nts=2 CC A.C587,A.C671 55 nts=2 UU A.U588,A.U589 56 nts=2 GU A.G605,A.U606 57 nts=2 UY A.U615,E.TYR35 58 nts=2 AG A.A616,A.G617 59 nts=2 AA A.A627,A.A637 60 nts=2 GG A.G628,A.G636 61 nts=2 GG A.G629,A.G630 62 nts=2 UU A.U641,A.U642 63 nts=2 AA A.A643,A.A644 64 nts=2 AA A.A675,A.A676 65 nts=2 GC A.G697,A.C698 66 nts=2 CA A.C740,A.A1981 67 nts=2 AU A.A752,A.U1781 68 nts=2 GC A.G757,A.C758 69 nts=2 UU A.U766,A.U767 70 nts=2 GA A.G776,A.A793 71 nts=2 AR A.A781,C.ARG211 72 nts=2 GA A.G784,A.A792 73 nts=2 GA A.G799,A.A800 74 nts=2 GU A.G809,A.U810 75 nts=2 CG A.C812,A.G1250 76 nts=2 UA A.U828,A.A829 77 nts=2 UC A.U850,A.C851 78 nts=2 GC A.G864,A.C865 79 nts=2 AC A.A909,A.C912 80 nts=2 AA A.A910,A.A911 81 nts=2 AC A.A920,A.C921 82 nts=2 GU A.G966,A.U967 83 nts=2 CG A.C991,A.G1185 84 nts=2 CF A.C995,Q.PHE56 85 nts=2 AG A.A996,A.G1160 86 nts=2 UA A.U1004,A.A1010 87 nts=2 CA A.C1005,A.A1143 88 nts=2 CA A.C1007,A.A1008 89 nts=2 UU A.U1018,A.U1019 90 nts=2 GG A.G1124,A.G1125 91 nts=2 GA A.G1128,A.A1129 92 nts=2 GH A.G1131,J.HIS77 93 nts=2 UA A.U1132,A.A1133 94 nts=2 AA A.A1142,A.A1144 95 nts=2 GC A.G1149,A.C1150 96 nts=2 GC A.G1163,A.C1164 97 nts=2 GC A.G1195,A.C1196 98 nts=2 GU A.G1197,A.U1198 99 nts=2 CU A.C1208,A.U1209 100 nts=2 GU A.G1216,A.U1217 101 nts=2 GG A.G1223,A.G1227 102 nts=2 GA A.G1252,A.A1253 103 nts=2 AU A.A1265,A.U1267 104 nts=2 AC A.A1274,A.C1646 105 nts=2 AH A.A1275,N.HIS16 106 nts=2 AG A.A1276,A.G1645 107 nts=2 AG A.A1301,A.G1303 108 nts=2 GG A.G1310,A.G1311 109 nts=2 UU A.U1326,A.U1648 110 nts=2 GG A.G1338,A.G1339 111 nts=2 GY A.G1341,T.TYR84 112 nts=2 GA A.G1343,A.A1597 113 nts=2 GG A.G1364,A.G1368 114 nts=2 AA A.A1385,A.A1403 115 nts=2 GU A.G1389,A.U1390 116 nts=2 AA A.A1392,A.A1393 117 nts=2 CU A.C1404,A.U1405 118 nts=2 GG A.G1429,A.G1568 119 nts=2 GA A.G1432,A.A1433 120 nts=2 AG A.A1434,A.G1435 121 nts=2 GG A.G1444,A.G1445 122 nts=2 GC A.G1450,A.C1451 123 nts=2 GG A.G1452,A.G2702 124 nts=2 CG A.C1499,A.G1500 125 nts=2 AG A.A1509,A.G1510 126 nts=2 AA A.A1551,A.A1552 127 nts=2 AW A.A1566,C.TRP212 128 nts=2 AU A.A1598,A.U1599 129 nts=2 GU A.G1601,A.U1602 130 nts=2 AC A.A1608,A.C1611 131 nts=2 GU A.G1620,A.U1621 132 nts=2 GU A.G1628,A.U1629 133 nts=2 CU A.C1670,A.U1671 134 nts=2 GA A.G1682,A.A1757 135 nts=2 GG A.G1695,A.G1696 136 nts=2 GG A.G1699,A.G1763 137 nts=2 UC A.U1751,A.C1752 138 nts=2 AA A.A1754,A.A1755 139 nts=2 GC A.G1770,A.C1771 140 nts=2 AA A.A1785,A.A1787 141 nts=2 CA A.C1788,A.A1789 142 nts=2 AG A.A1791,A.G1792 143 nts=2 CG A.C1806,A.G1807 144 nts=2 CY A.C1816,C.TYR61 145 nts=2 AG A.A1970,A.G1972 146 nts=2 GU A.G1975,A.U1976 147 nts=2 GU A.G1980,A.U1982 148 nts=2 GC A.G1992,A.C1997 149 nts=2 UC A.U1995,A.C1996 150 nts=2 AG A.A2009,A.G2010 151 nts=2 UU A.U2016,A.U2017 152 nts=2 AC A.A2033,A.C2036 153 nts=2 GU A.G2040,A.U2041 154 nts=2 CG A.C2043,A.G2777 155 nts=2 GG A.G2046,A.G2623 156 nts=2 GA A.G2053,A.A2054 157 nts=2 UG A.U2617,A.G2618 158 nts=2 GG A.G2630,A.G2894 159 nts=2 GU A.G2671,A.U2672 160 nts=2 UU A.U2689,A.U2713 161 nts=2 AG A.A2711,A.G2714 162 nts=2 UA A.U2720,A.A2872 163 nts=2 GR A.G2751,G.ARG2 164 nts=2 AG A.A2799,A.G2801 165 nts=2 AR A.A2820,N.ARG4 166 nts=2 GG A.G2838,A.G2839 167 nts=2 AG A.A2856,A.G2857 168 nts=2 UU A.U2865,A.U2866 169 nts=2 AG A.A2868,A.G2869 170 nts=2 CU A.C2870,A.U2871 171 nts=2 AA A.A2882,A.A2883 172 nts=2 CG A.C2889,A.G2890 173 nts=2 CU A.C2902,A.U2903 174 nts=3 CAA A.C11,A.A10,A.A2800 175 nts=3 AGA A.A42,A.G43,A.A44 176 nts=3 AAG A.A52,A.A53,A.G54 177 nts=3 GUC A.G77,A.U78,A.C79 178 nts=3 AAA A.A84,A.A103,A.A104 179 nts=3 GGU A.G85,A.G98,A.U99 180 nts=3 GGC A.G107,A.G108,A.C109 181 nts=3 UAU A.U120,A.A149,A.U150 182 nts=3 GGR A.G123,A.G124,2.ARG19 183 nts=3 GGG A.G188,A.G189,A.G205 184 nts=3 AAA A.A223,A.A422,A.A423 185 nts=3 CGC A.C246,A.G247,A.C249 186 nts=3 AAG A.A278,A.A362,A.G363 187 nts=3 UGA A.U288,A.G287,A.A354 188 nts=3 GGC A.G291,A.G350,A.C351 189 nts=3 AUG A.A311,A.U328,A.G327 190 nts=3 AGG A.A320,A.G319,A.G333 191 nts=3 CGU A.C337,A.G338,A.U339 192 nts=3 AAA A.A346,A.A347,A.A348 193 nts=3 GUG A.G359,A.U360,A.G361 194 nts=3 GGC A.G376,A.G377,A.C378 195 nts=3 UGU A.U387,A.G388,A.U390 196 nts=3 GGG A.G407,A.G408,A.G409 197 nts=3 UAA A.U525,A.A13,A.A526 198 nts=3 CGU A.C531,A.G2035,A.U2034 199 nts=3 UGG A.U534,A.G533,A.G561 200 nts=3 GGC A.G535,A.G559,A.C560 201 nts=3 GCU A.G543,A.C544,A.U545 202 nts=3 UAU A.U562,A.A572,A.U573 203 nts=3 CUU A.C565,A.U566,A.U567 204 nts=3 GGA A.G604,A.G625,A.A626 205 nts=3 CGA A.C611,A.G612,A.A614 206 nts=3 GGG A.G618,A.G619,A.G620 207 nts=3 GGU A.G638,A.G651,A.U652 208 nts=3 GGG A.G696,A.G695,A.G768 209 nts=3 GGU A.G712,A.G713,A.U714 210 nts=3 GUG A.G729,A.U1775,A.G1776 211 nts=3 AGG A.A739,A.G738,A.G759 212 nts=3 UGU A.U744,A.G745,A.U746 213 nts=3 AAR A.A751,A.A789,2.ARG3 214 nts=3 UGC A.U762,A.G763,A.C765 215 nts=3 GGA A.G777,A.G775,A.A794 216 nts=3 AGC A.A783,A.G785,A.C786 217 nts=3 CUG A.C806,A.U807,A.G808 218 nts=3 GGC A.G822,A.G836,A.C837 219 nts=3 AAU A.A844,A.A845,A.U847 220 nts=3 CAU A.C848,A.A933,A.U932 221 nts=3 CAG A.C867,A.A866,A.G914 222 nts=3 GAA A.G926,A.A927,A.A928 223 nts=3 GGC A.G949,A.G950,A.C951 224 nts=3 GGU A.G953,A.G954,A.U955 225 nts=3 GGU A.G956,A.G962,A.U963 226 nts=3 CAA A.C957,A.A959,A.A960 227 nts=3 GAA A.G976,A.A975,A.A990 228 nts=3 UGC A.U999,A.G1154,A.C1153 229 nts=3 CGA A.C1013,A.G1011,A.A1151 230 nts=3 AAU A.A1020,A.A1021,A.U1023 231 nts=3 GGC A.G1024,A.G1025,A.C1135 232 nts=3 AAC A.A1028,A.A1029,A.C1030 233 nts=3 CUU A.C1178,A.U1180,A.U1181 234 nts=3 GGC A.G1218,A.G1232,A.C1233 235 nts=3 UGA A.U1224,A.G1225,A.A1226 236 nts=3 AUC A.A1241,A.U1242,A.C1243 237 nts=3 AUR A.A1247,A.U1249,L.ARG18 238 nts=3 GGU A.G1266,A.G2012,A.U2011 239 nts=3 GUG A.G1281,A.U1282,A.G1283 240 nts=3 CGC A.C1298,A.G1299,A.C1639 241 nts=3 ACC A.A1304,A.C1305,A.C1306 242 nts=3 UAC A.U1312,A.A1603,A.C1604 243 nts=3 AAC A.A1321,A.A1322,A.C1323 244 nts=3 UAA A.U1344,A.A1384,A.A1383 245 nts=3 CAU A.C1345,A.A1342,A.U1397 246 nts=3 ACC A.A1347,A.C1348,A.C1349 247 nts=3 AAA A.A1365,A.A1366,A.A1367 248 nts=3 UAC A.U1394,A.A1395,A.C1398 249 nts=3 GGU A.G1407,A.G1408,A.U1409 250 nts=3 UGC A.U1458,A.G1459,A.C1461 251 nts=3 AAG A.A1469,A.A1470,A.G1471 252 nts=3 AUC A.A1505,A.U1506,A.C1507 253 nts=3 CGG A.C1536,A.G1537,A.G1538 254 nts=3 CAG A.C1585,A.A1586,A.G1587 255 nts=3 AUC A.A1593,A.U1594,A.C1595 256 nts=3 AAA A.A1665,A.A1664,A.A2726 257 nts=3 CUC A.C1691,A.U1692,A.C1694 258 nts=3 GGG A.G1707,A.G1756,A.G1753 259 nts=3 CCC A.C1726,A.C1727,A.C1728 260 nts=3 GGG A.G1731,A.G1733,A.G1734 261 nts=3 UUA A.U1777,A.U1778,A.A1784 262 nts=3 CGU A.C1790,A.G1828,A.U1827 263 nts=3 GGG A.G1797,A.G1823,A.G1824 264 nts=3 AAG A.A1809,A.A1810,A.G1811 265 nts=3 GAC A.G2004,A.A2005,A.C2006 266 nts=3 GUG A.G2027,A.U2028,A.G2029 267 nts=3 CAA A.C2050,A.A2051,A.A2614 268 nts=3 GAA A.G2057,A.A2058,A.A2059 269 nts=3 UGG A.U2629,A.G9,A.G2895 270 nts=3 GGG A.G2643,A.G2644,A.G2645 271 nts=3 CUC A.C2681,A.U2724,A.C2723 272 nts=3 ACU A.A2682,A.C2683,A.U2684 273 nts=3 CAA A.C2704,A.A2705,A.A2706 274 nts=3 UUG A.U2768,A.U2769,A.G2770 275 nts=3 CUU A.C2795,A.U2796,A.U2798 276 nts=3 CCU A.C2805,A.C2806,A.U2807 277 nts=3 GUG A.G2808,A.U2891,A.G2892 278 nts=3 AAG A.A2809,A.A2810,A.G2811 279 nts=3 GAG A.G2819,A.A2821,A.G2822 280 nts=3 UGG A.U2847,A.G2848,A.G2867 281 nts=3 AAG A.A2850,A.A2851,A.G2852 282 nts=3 CGA A.C2858,A.G2859,A.A2860 283 nts=3 GUR A.G2885,A.U2884,0.ARG49 284 nts=3 AAC A.A2886,A.A2887,A.C2888 285 nts=3 QGR E.GLN46,A.G1248,Q.ARG2 286 nts=4 GCCC A.G30,A.C31,A.C32,A.C33 287 nts=4 UAAU A.U82,A.A83,A.A101,A.U100 288 nts=4 UGAA A.U92,A.G93,A.A94,A.A95 289 nts=4 GAUU A.G110,A.A111,A.U112,A.U113 290 nts=4 CCAU A.C163,A.C164,A.A165,A.U166 291 nts=4 CAAC A.C183,A.A182,A.A181,A.C435 292 nts=4 GAGG A.G212,A.A213,A.G214,A.G215 293 nts=4 GGAG A.G248,A.G250,A.A251,A.G252 294 nts=4 AAAA A.A265,A.A428,A.A429,A.A430 295 nts=4 AUGU A.A371,A.U373,A.G400,A.U399 296 nts=4 GGGU A.G380,A.G379,A.G396,A.U397 297 nts=4 CAUC A.C414,A.A415,A.U416,A.C417 298 nts=4 UAGG A.U451,A.A453,A.G452,A.G458 299 nts=4 GGGU A.G536,A.G537,A.G555,A.U554 300 nts=4 GAAC A.G539,A.A538,A.A556,A.C557 301 nts=4 UGAU A.U569,A.G570,A.A2030,A.U571 302 nts=4 GAUA A.G579,A.A1262,A.U1263,A.A1264 303 nts=4 CAAA A.C601,A.A602,A.A655,A.A603 304 nts=4 AAAC A.A631,A.A632,A.A633,A.C634 305 nts=4 AAGG A.A668,A.A670,A.G669,A.G801 306 nts=4 CGAG A.C732,A.G733,A.A761,A.G760 307 nts=4 GUGA A.G778,A.U779,A.G780,A.A782 308 nts=4 GAAU A.G971,A.A972,A.A973,A.U1188 309 nts=4 AAGA A.A1126,A.A1027,A.G1026,A.A1134 310 nts=4 GACG A.G1168,A.A1169,A.C1170,A.G1171 311 nts=4 GUAG A.G1202,A.U1203,A.A1204,A.G1206 312 nts=4 GGGU A.G1212,A.G1236,A.G1235,A.U1234 313 nts=4 CUGC A.C1351,A.U1352,A.G1377,A.C1376 314 nts=4 CGGC A.C1357,A.G1358,A.G1371,A.C1370 315 nts=4 UAAG A.U1440,A.A1439,A.A1553,A.G1555 316 nts=4 UGGA A.U1484,A.G1483,A.G1482,A.A1508 317 nts=4 AAAC A.A1494,A.A1495,A.A1496,A.C1498 318 nts=4 CCGC A.C1557,A.C1558,A.G1560,A.C1561 319 nts=4 CCGY A.C1564,A.C1565,A.G1567,C.TYR82 320 nts=4 CCGG A.C1615,A.C1617,A.G1613,A.G1619 321 nts=4 CAGA A.C1625,A.A1626,A.G1300,A.A1634 322 nts=4 GAAG A.G1627,A.A1640,A.A1641,A.G1642 323 nts=4 GAAC A.G1631,A.A1630,A.A1637,A.C1638 324 nts=4 AGAU A.A1632,A.G1633,A.A1635,A.U1636 325 nts=4 GAGQ A.G1651,A.A1652,A.G1653,N.GLN9 326 nts=4 GAUC A.G1674,A.A1668,A.U1993,A.C1994 327 nts=4 UAAU A.U1693,A.A1977,A.A1978,A.U1979 328 nts=4 CAAC A.C1774,A.A1773,A.A1829,A.C1830 329 nts=4 CAAC A.C1800,A.A1802,A.A1803,A.C1804 330 nts=4 AAGR A.A1821,A.A1819,A.G1799,C.ARG181 331 nts=4 GCGC A.G2625,A.C2626,A.G2627,A.C2628 332 nts=4 UGGC A.U2637,A.G2638,A.G2775,A.C2774 333 nts=4 UCGG A.U2647,A.C2646,A.G2732,A.G2731 334 nts=4 CUAU A.C2652,A.U2653,A.A2654,A.U2656 335 nts=4 GGAA A.G2686,A.G2685,A.A2725,A.A2727 336 nts=4 UGGG A.U2687,A.G2688,A.G2719,A.G2718 337 nts=4 UAAG A.U2690,A.A2873,A.A2721,A.G2722 338 nts=4 AAGA A.A2733,A.A2734,A.G2735,A.A2736 339 nts=4 CCAU A.C2788,A.C2789,A.A2893,A.U2790 340 nts=4 GAAC A.G2812,A.A2813,A.A2814,A.C2815 341 nts=4 GAAU A.G2834,A.A2879,A.A2835,A.U2878 342 nts=4 GGUG A.G2843,A.G2844,A.U2845,A.G2846 343 nts=5 CAAAF A.C57,A.A56,A.A127,A.A126,2.PHE18 344 nts=5 UGAGC A.U62,A.G60,A.A74,A.G68,A.C69 345 nts=5 UUAAG A.U235,A.U234,A.A233,A.A221,A.G266 346 nts=5 AAAAC A.A300,A.A299,A.A322,A.A340,A.C341 347 nts=5 GUCUG A.G303,A.U304,A.C305,A.U306,A.G307 348 nts=5 GAAAU A.G375,A.A374,A.A401,A.A402,A.U403 349 nts=5 GAGUG A.G496,A.A497,A.G498,A.U499,A.G500 350 nts=5 UGGAA A.U683,A.G684,A.G774,A.A685,A.A689 351 nts=5 GAAAC A.G700,A.A699,A.A734,A.A735,A.C736 352 nts=5 AACAC A.A715,A.A716,A.C717,A.A718,A.C719 353 nts=5 GAAAA A.G748,A.A750,A.A749,A.A1618,A.A1272 354 nts=5 CAGAC A.C838,A.A941,A.G942,A.A943,A.C944 355 nts=5 GACAA A.G978,A.A979,A.C982,A.A981,A.A980 356 nts=5 GAAAG A.G1002,A.A1001,A.A1000,A.A1155,A.G1157 357 nts=5 GGCGU A.G1138,A.G1139,A.C1140,A.G1022,A.U1141 358 nts=5 GAAAG A.G1210,A.A1237,A.A1213,A.A1214,A.G1215 359 nts=5 GGCUR A.G1256,A.G585,A.C1251,A.U811,L.ARG21 360 nts=5 AAAAA A.A1269,A.A1268,A.A2013,A.A2014,A.A2015 361 nts=5 GAAAG A.G1355,A.A1354,A.A1353,A.A1378,A.G1380 362 nts=5 GGUAG A.G1361,A.G1360,A.U1372,A.A1373,A.G1374 363 nts=5 GCGUC A.G1416,A.C1417,A.G1418,A.U1578,A.C1577 364 nts=5 GGGAC A.G1424,A.G1425,A.G1426,A.A1427,A.C1428 365 nts=5 UGGUC A.U1474,A.G1475,A.G1514,A.U1513,A.C1512 366 nts=5 CGUAG A.C1686,A.G1687,A.U1688,A.A1698,A.G1697 367 nts=5 AAAAG A.A1690,A.A1689,A.A1700,A.A1701,A.G1702 368 nts=5 UAUGU A.U1712,A.A1713,A.U1716,A.G1743,A.U1742 369 nts=5 GAAAA A.G1718,A.A1717,A.A1744,A.A1745,A.A1746 370 nts=5 UGGGU A.U1720,A.G1721,A.G1738,A.G1737,A.U1736 371 nts=5 GGAAG A.G1724,A.G1723,A.A1722,A.A1739,A.G1740 372 nts=5 GAAAG A.G2640,A.A2639,A.A2778,A.A2776,A.G2782 373 nts=5 AAAAU A.A2750,A.A2749,A.A2748,A.A2757,A.U2756 374 nts=6 UCUAAU A.U200,A.C201,A.U202,A.A203,A.A204,A.U206 375 nts=6 CCAUGC A.C239,A.C240,A.A241,A.U243,A.G254,A.C253 376 nts=6 GAAACG A.G245,A.A244,A.A255,A.A256,A.C257,A.G258 377 nts=6 GGAAGG A.G271,A.G367,A.A368,A.A270,A.G370,A.G424 378 nts=6 CAAAAC A.C455,A.A472,A.A471,A.A470,A.A460,A.C461 379 nts=6 AGUACU A.A466,A.G465,A.U464,A.A788,A.C687,A.U688 380 nts=6 CAGAAU A.C564,A.A563,A.G2018,A.A2019,A.A2020,A.U2022 381 nts=6 CAAAGC A.C610,A.A609,A.A608,A.A621,A.G622,A.C623 382 nts=6 UUGGGU A.U702,A.U703,A.G704,A.G726,A.G725,A.U724 383 nts=6 GAAAGA A.G707,A.A706,A.A705,A.A727,A.G728,A.A730 384 nts=6 GGGGGC A.G856,A.G857,A.G858,A.G859,A.G916,A.C915 385 nts=6 AGAAAU A.A863,A.G862,A.A861,A.A917,A.A918,A.U919 386 nts=6 CAAAAG A.C946,A.A821,A.A820,A.A819,A.A1189,A.G1190 387 nts=6 GAAGGU A.G1309,A.A1308,A.A1307,A.G1622,A.G1623,A.U1624 388 nts=6 GAAAGC A.G1421,A.A1419,A.A1579,A.A1580,A.G1581,A.C1582 389 nts=6 GGAAGG A.G1479,A.G1478,A.A1477,A.A1515,A.G1516,A.G1517 390 nts=6 AAAAGC A.A1569,A.A1570,A.A1571,A.A1572,A.G1573,A.C1574 391 nts=6 CCAGAA A.C1606,A.C1605,A.A1610,A.G1332,A.A1609,A.A1616 392 nts=6 GGUCGG A.G1666,A.G1667,A.U1991,A.C1990,A.G1989,A.G1988 393 nts=6 GGAGUR A.G1813,A.G1814,A.A1815,A.G1817,A.U1818,C.ARG155 394 nts=6 CGGGAC A.C2649,A.G2648,A.G2673,A.G2674,A.A2675,A.C2676 395 nts=6 GGGAGA A.G2655,A.G2664,A.G2663,A.A2662,A.G2661,A.A2660 396 nts=6 CUGUAC A.C2745,A.U2746,A.G2747,A.U2754,A.A2753,A.C2752 397 nts=7 UAAAACC A.U29,A.A28,A.A513,A.A514,A.A515,A.C516,A.C517 398 nts=7 CGAAAGA A.C116,A.G117,A.A119,A.A118,A.A49,A.G177,A.A176 399 nts=7 GAAAAGA A.G329,A.A477,A.A478,A.A480,A.A479,A.G481,A.A507 400 nts=7 AGAAGGG A.A1287,A.G1288,A.A1327,A.A1328,A.G1324,A.G1331,A.G1333 401 nts=7 UUGAAAG A.U1468,A.U1467,A.G1546,A.A1545,A.A1544,A.A1528,A.G1529 402 nts=7 CAAACUA A.C2023,A.A529,A.A2042,A.A528,A.C527,A.U2779,A.A2781 403 nts=7 GCAACCG A.G2659,A.C2658,A.A2657,A.A2665,A.C2666,A.C2667,A.G2668 404 nts=7 GAUGCAG A.G2737,A.A2738,A.U2739,A.G2763,A.C2762,A.A2761,A.G2744 405 nts=7 UGAAAAC A.U2743,A.G2742,A.A2741,A.A2740,A.A2764,A.A2766,A.C2767 406 nts=8 CCGAUAAC A.C672,A.C673,A.G674,A.A804,A.U803,A.A802,A.A677,A.C678 407 nts=8 CGGGGGAC A.C817,A.G818,A.G1187,A.G1186,A.G974,A.G989,A.A988,A.C987 408 nts=8 CAAACGAC A.C1656,A.A1655,A.A1654,A.A2823,A.C2824,A.G2825,A.A2826,A.C2827 409 nts=9 GGUCGGAAG A.G27,A.G512,A.U511,A.C510,A.G474,A.G473,A.A447,A.A454,A.G35 410 nts=9 CUGAAAAAC A.C426,A.U427,A.G220,A.A219,A.A218,A.A217,A.A216,A.A432,A.C433 411 nts=9 GAGGAAUAC A.G493,A.A492,A.G491,A.G489,A.A1284,A.A1285,A.U1329,A.A1286,A.C1289 412 nts=9 UGAGACGGU A.U1520,A.G1521,A.A1522,A.G1524,A.A1525,A.C1526,A.G1527,A.G1543,A.U1542 413 nts=10 ACAGUCAAAC A.A197,A.C198,A.A195,A.G194,A.U193,A.C192,A.A191,A.A190,A.A207,A.C208 414 nts=13 CGGAAAGAAAAGA A.C314,A.G313,A.G312,A.A310,A.A330,A.A309,A.G308,A.A501,A.A502,A.A505,A.A503,A.G506,A.A482 415 nts=13 AGCAAAAUGACCA A.A1672,A.G1673,A.C1675,A.A1676,A.A1677,A.A1678,A.A1679,A.U1680,A.G1681,A.A1762,A.C1761,A.C1760,A.A1759 **************************************************************************** Nucleotides not involved in stacking interactions nts=150 UUGUACUUCGUAAACCCUGCUCUACGGAUGCUUCUUCACGUAGGUAACUUACUAUCGUGUCUUAUCAACAUCAUAUUAUGGACGUAUCCUUUUACUUACUUACUUAUCUCAUUCUUAUAAAAUUGGAUCAGCGAUCUCCCCAAGUUUUUU A.U34,A.U50,A.G51,A.U102,A.A125,A.C128,A.U138,A.U139,A.C140,A.G141,A.U162,A.A196,A.A199,A.A227,A.C228,A.C229,A.C264,A.U276,A.G277,A.C281,A.U321,A.C331,A.U369,A.A382,A.C383,A.G386,A.G389,A.A391,A.U405,A.G411,A.C421,A.U431,A.U434,A.C436,A.U437,A.U448,A.C490,A.A504,A.C509,A.G530,A.U546,A.A547,A.G548,A.G549,A.U568,A.A574,A.A613,A.C645,A.U646,A.U653,A.A654,A.C679,A.U747,A.A764,A.U790,A.C791,A.G805,A.U827,A.G830,A.U846,A.C908,A.U913,A.U931,A.A945,A.U958,A.C961,A.A983,A.A984,A.C985,A.A1009,A.U1012,A.C1123,A.A1127,A.U1130,A.A1156,A.U1173,A.U1174,A.A1175,A.U1176,A.G1177,A.G1179,A.A1205,A.C1211,A.G1271,A.U1273,A.A1302,A.U1313,A.C1314,A.C1320,A.U1325,A.U1340,A.U1391,A.U1396,A.A1420,A.C1454,A.U1460,A.U1476,A.A1490,A.C1493,A.U1497,A.U1523,A.A1535,A.C1547,A.U1554,A.U1559,A.A1583,A.U1584,A.C1607,A.U1647,A.C1658,A.A1669,A.U1714,A.U1729,A.C1730,A.U1758,A.U1779,A.A1780,A.U1782,A.A1783,A.A1786,A.A1801,A.A1808,A.U1820,A.U1834,A.G1835,A.G1968,A.A1969,A.U1971,A.C1986,A.A2031,A.G2032,A.C2055,A.G2056,A.A2060,A.U2609,A.C2610,A.U2613,A.C2616,A.C2691,A.C2712,A.C2755,A.A2758,A.A2765,A.G2780,A.U2784,A.U2797,A.U2833,A.U2849,A.U2861,A.U2898 **************************************************************************** List of 109 atom-base capping interactions dv: vertical distance of the atom above the nucleotide base ----------------------------------------------------------- type atom nt dv 1 sugar O2'@A.A83 A.A84 3.39 2 phosphate OP1@A.U138 A.U139 3.24 3 sugar O4'@A.U120 A.A149 3.10 4 sugar O4'@A.G168 A.A167 3.28 5 sugar O2'@A.C198 A.A199 3.09 6 sugar O4'@A.A204 A.U206 2.98 7 phosphate OP2@A.A222 A.A222 3.44 8 sugar O2'@A.G277 A.A278 2.92 9 sugar O2'@A.A362 A.A279 3.00 10 sugar O4'@A.C334 A.A300 3.43 11 phosphate OP2@A.A309 A.G307 3.00 12 other OG1@E.THR131 A.A320 2.93 13 sugar O2'@A.A309 A.G329 3.16 14 sugar O4'@A.A311 A.A332 2.92 15 sugar O4'@A.G338 A.C337 3.48 16 sugar O4'@A.U387 A.G388 3.15 17 sugar O4'@A.A404 A.G406 3.09 18 phosphate OP2@A.G465 A.G463 2.93 19 phosphate OP2@A.A466 A.G467 3.28 20 phosphate OP2@A.A478 A.G476 3.01 21 sugar O4'@A.C484 A.A483 3.26 22 phosphate OP2@A.A502 A.G500 3.00 23 phosphate O5'@A.A502 A.G500 3.34 24 sugar O4'@A.A507 A.C509 3.07 25 sugar O2'@A.U2779 A.C527 3.42 26 sugar O4'@A.C527 A.A528 3.39 27 phosphate OP2@A.C2036 A.G530 2.97 28 sugar O4'@A.C2036 A.U562 3.15 29 phosphate OP2@A.G570 A.U568 3.17 30 sugar O4'@A.C671 A.C587 3.06 31 sugar O4'@A.G622 A.A621 3.34 32 phosphate OP2@A.A632 A.G630 3.03 33 phosphate OP1@A.A655 A.A655 3.36 34 sugar O4'@A.A727 A.A705 3.36 35 phosphate OP2@A.A716 A.U714 3.11 36 sugar O4'@A.A705 A.A727 3.38 37 sugar O4'@A.U1781 A.A752 3.05 38 sugar O4'@A.U762 A.G763 3.02 39 sugar O4'@A.A792 A.G784 3.21 40 phosphate OP2@A.U827 A.U828 3.25 41 phosphate O3'@A.U828 A.G831 3.45 42 sugar O4'@A.U932 A.A933 3.12 43 sugar O2'@A.G570 A.A983 3.33 44 sugar O4'@A.U1004 A.A1010 3.13 45 sugar O4'@A.C1005 A.U1012 3.32 46 sugar O4'@A.A1020 A.A1021 3.12 47 sugar O2'@A.G1128 A.A1129 2.97 48 sugar O2'@A.C2025 A.G1131 3.48 49 sugar O2'@A.U1132 A.A1133 3.09 50 sugar O4'@A.U1141 A.A1142 3.08 51 sugar O4'@A.C1140 A.A1143 3.14 52 sugar O4'@A.U1180 A.G1179 3.43 53 sugar O4'@A.A973 A.U1188 3.06 54 phosphate OP2@A.G1225 A.G1223 3.08 55 sugar O4'@A.C1196 A.A1226 3.40 56 phosphate OP2@A.A1285 A.G1283 3.06 57 sugar O4'@A.G489 A.A1284 3.02 58 sugar O4'@A.A1634 A.G1300 3.07 59 phosphate OP2@A.U1329 A.C1320 3.36 60 sugar O4'@A.C1398 A.G1341 3.49 61 sugar O4'@A.G1360 A.A1359 3.43 62 phosphate OP1@A.A1366 A.G1364 3.01 63 sugar O4'@A.U1344 A.A1384 3.25 64 phosphate OP2@A.A1393 A.U1391 2.93 65 phosphate OP2@A.A1570 A.A1427 3.18 66 sugar O4'@A.A1427 A.C1428 3.11 67 sugar O4'@A.U1440 A.A1439 3.36 68 sugar O4'@A.U1458 A.G1459 2.95 69 phosphate OP1@A.U1578 A.U1497 3.01 70 sugar O4'@A.G1516 A.A1515 3.32 71 sugar O4'@A.A1522 A.G1524 2.98 72 sugar O4'@A.C1536 A.G1537 3.12 73 sugar O4'@A.G1567 A.G1568 3.14 74 phosphate OP1@A.G1341 A.U1602 3.15 75 sugar O2'@A.C1606 A.A1608 3.11 76 phosphate OP2@A.G1633 A.G1631 3.00 77 sugar O4'@A.A2823 A.A1654 3.18 78 sugar O4'@A.A1668 A.A1669 3.02 79 phosphate OP2@A.G1673 A.U1671 2.95 80 sugar O4'@A.A1757 A.G1682 3.39 81 sugar O4'@A.C1694 A.G1695 3.15 82 sugar O4'@A.A1700 A.A1698 3.48 83 sugar O4'@A.U1716 A.A1713 3.07 84 phosphate OP2@A.A1755 A.G1753 3.06 85 sugar O4'@A.G1756 A.U1758 3.23 86 sugar O2'@A.U2695 A.U1758 3.00 87 sugar O2'@A.C1790 A.A1791 3.23 88 sugar O4'@A.A1819 A.A1821 3.05 89 sugar O4'@A.C1830 A.A1829 3.28 90 sugar O4'@A.C740 A.A1981 3.15 91 sugar O4'@A.G579 A.U2017 3.39 92 sugar O2'@A.C2616 A.U2022 3.20 93 phosphate OP1@A.C2628 A.U2629 3.01 94 phosphate OP2@A.G2661 A.G2659 2.97 95 other OG@G.SER109 A.G2668 3.49 96 sugar O4'@A.C2001 A.U2689 3.45 97 sugar O4'@A.G2714 A.A2711 3.38 98 phosphate OP1@A.C2715 A.C2712 3.01 99 sugar O4'@A.U2689 A.U2713 3.31 100 sugar O2'@A.A2764 A.A2765 3.01 101 sugar O4'@A.C2628 A.A2781 3.38 102 sugar O4'@A.U2779 A.A2781 3.02 103 sugar O4'@A.U2798 A.A2799 3.18 104 sugar O4'@A.U2832 A.G2834 3.37 105 sugar O4'@A.G2869 A.A2850 3.14 106 phosphate OP2@A.G2859 A.G2857 3.03 107 sugar O4'@A.C2691 A.A2872 2.98 108 sugar O4'@A.G2831 A.A2883 3.40 109 sugar O4'@A.A2893 A.G2894 3.06 **************************************************************************** Note: for the various types of loops listed below, numbers within the first set of brackets are the number of loop nts, and numbers in the second set of brackets are the identities of the stems (positive number) or isolated WC/wobble pairs (negative numbers) to which they are linked. **************************************************************************** List of 52 hairpin loops 1 hairpin loop: nts=12; [10]; linked by [#8] summary: [1] 10 [A.58 A.69] 2 nts=12 GUGCUAAUCUGC A.G58,A.U59,A.G60,A.C61,A.U62,A.A63,A.A64,A.U65,A.C66,A.U67,A.G68,A.C69 nts=10 UGCUAAUCUG A.U59,A.G60,A.C61,A.U62,A.A63,A.A64,A.U65,A.C66,A.U67,A.G68 2 hairpin loop: nts=23; [21]; linked by [#9] summary: [1] 21 [A.66 A.88] 3 nts=23 CUGCGAUAAGCGUCGGUAAGGUG A.C66,A.U67,A.G68,A.C69,A.G70,A.A71,A.U72,A.A73,A.A74,A.G75,A.C76,A.G77,A.U78,A.C79,A.G80,A.G81,A.U82,A.A83,A.A84,A.G85,A.G86,A.U87,A.G88 nts=21 UGCGAUAAGCGUCGGUAAGGU A.U67,A.G68,A.C69,A.G70,A.A71,A.U72,A.A73,A.A74,A.G75,A.C76,A.G77,A.U78,A.C79,A.G80,A.G81,A.U82,A.A83,A.A84,A.G85,A.G86,A.U87 3 hairpin loop: nts=9; [7]; linked by [#12] summary: [1] 7 [A.87 A.95] 3 nts=9 UGAUAUGAA A.U87,A.G88,A.A89,A.U90,A.A91,A.U92,A.G93,A.A94,A.A95 nts=7 GAUAUGA A.G88,A.A89,A.U90,A.A91,A.U92,A.G93,A.A94 4 hairpin loop: nts=6; [4]; linked by [#13] summary: [1] 4 [A.123 A.128] 3 nts=6 GGAAAC A.G123,A.G124,A.A125,A.A126,A.A127,A.C128 nts=4 GAAA A.G124,A.A125,A.A126,A.A127 5 hairpin loop: nts=6; [4]; linked by [#14] summary: [1] 4 [A.137 A.142] 7 nts=6 UUUCGA A.U137,A.U138,A.U139,A.C140,A.G141,A.A142 nts=4 UUCG A.U138,A.U139,A.C140,A.G141 6 hairpin loop: nts=11; [9]; linked by [#15] summary: [1] 9 [A.158 A.168] 9 nts=11 UGAAUCCAUAG A.U158,A.G159,A.A160,A.A161,A.U162,A.C163,A.C164,A.A165,A.U166,A.A167,A.G168 nts=9 GAAUCCAUA A.G159,A.A160,A.A161,A.U162,A.C163,A.C164,A.A165,A.U166,A.A167 7 hairpin loop: nts=8; [6]; linked by [#-4] summary: [1] 6 [A.194 A.201] 1 nts=8 GAAACAUC A.G194,A.A195,A.A196,A.A197,A.C198,A.A199,A.U200,A.C201 nts=6 AAACAU A.A195,A.A196,A.A197,A.C198,A.A199,A.U200 8 hairpin loop: nts=6; [4]; linked by [#17] summary: [1] 4 [A.225 A.230] 2 nts=6 CAACCG A.C225,A.A226,A.A227,A.C228,A.C229,A.G230 nts=4 AACC A.A226,A.A227,A.C228,A.C229 9 hairpin loop: nts=7; [5]; linked by [#19] summary: [1] 5 [A.246 A.252] 2 nts=7 CGGCGAG A.C246,A.G247,A.G248,A.C249,A.G250,A.A251,A.G252 nts=5 GGCGA A.G247,A.G248,A.C249,A.G250,A.A251 10 hairpin loop: nts=8; [6]; linked by [#-7] summary: [1] 6 [A.305 A.312] 1 nts=8 CUGGAAAG A.C305,A.U306,A.G307,A.G308,A.A309,A.A310,A.A311,A.G312 nts=6 UGGAAA A.U306,A.G307,A.G308,A.A309,A.A310,A.A311 11 hairpin loop: nts=16; [14]; linked by [#27] summary: [1] 14 [A.318 A.333] 2 nts=16 CGAUACAGGGUGACAG A.C318,A.G319,A.A320,A.U321,A.A322,A.C323,A.A324,A.G325,A.G326,A.G327,A.U328,A.G329,A.A330,A.C331,A.A332,A.G333 nts=14 GAUACAGGGUGACA A.G319,A.A320,A.U321,A.A322,A.C323,A.A324,A.G325,A.G326,A.G327,A.U328,A.G329,A.A330,A.C331,A.A332 12 hairpin loop: nts=9; [7]; linked by [#28] summary: [1] 7 [A.327 A.335] 3 nts=9 GUGACAGCC A.G327,A.U328,A.G329,A.A330,A.C331,A.A332,A.G333,A.C334,A.C335 nts=7 UGACAGC A.U328,A.G329,A.A330,A.C331,A.A332,A.G333,A.C334 13 hairpin loop: nts=11; [9]; linked by [#30] summary: [1] 9 [A.382 A.392] 3 nts=11 ACACGUGGUAU A.A382,A.C383,A.A384,A.C385,A.G386,A.U387,A.G388,A.G389,A.U390,A.A391,A.U392 nts=9 CACGUGGUA A.C383,A.A384,A.C385,A.G386,A.U387,A.G388,A.G389,A.U390,A.A391 14 hairpin loop: nts=8; [6]; linked by [#32] summary: [1] 6 [A.410 A.417] 2 nts=8 GGACCAUC A.G410,A.G411,A.A412,A.C413,A.C414,A.A415,A.U416,A.C417 nts=6 GACCAU A.G411,A.A412,A.C413,A.C414,A.A415,A.U416 15 hairpin loop: nts=6; [4]; linked by [#33] summary: [1] 4 [A.462 A.467] 2 nts=6 CGUGAG A.C462,A.G463,A.U464,A.G465,A.A466,A.G467 nts=4 GUGA A.G463,A.U464,A.G465,A.A466 16 hairpin loop: nts=7; [5]; linked by [#34] summary: [1] 5 [A.487 A.493] 4 nts=7 CGGCGAG A.C487,A.G488,A.G489,A.C490,A.G491,A.A492,A.G493 nts=5 GGCGA A.G488,A.G489,A.C490,A.G491,A.A492 17 hairpin loop: nts=8; [6]; linked by [#36] summary: [1] 6 [A.543 A.550] 5 nts=8 GCUUAGGC A.G543,A.C544,A.U545,A.U546,A.A547,A.G548,A.G549,A.C550 nts=6 CUUAGG A.C544,A.U545,A.U546,A.A547,A.G548,A.G549 18 hairpin loop: nts=10; [8]; linked by [#-14] summary: [1] 8 [A.566 A.575] 1 nts=10 UUUUGUAUAA A.U566,A.U567,A.U568,A.U569,A.G570,A.U571,A.A572,A.U573,A.A574,A.A575 nts=8 UUUGUAUA A.U567,A.U568,A.U569,A.G570,A.U571,A.A572,A.U573,A.A574 19 hairpin loop: nts=7; [5]; linked by [#40] summary: [1] 5 [A.611 A.617] 2 nts=7 CGAAUAG A.C611,A.G612,A.A613,A.A614,A.U615,A.A616,A.G617 nts=5 GAAUA A.G612,A.A613,A.A614,A.U615,A.A616 20 hairpin loop: nts=6; [4]; linked by [#41] summary: [1] 4 [A.629 A.634] 2 nts=6 GGAAAC A.G629,A.G630,A.A631,A.A632,A.A633,A.C634 nts=4 GAAA A.G630,A.A631,A.A632,A.A633 21 hairpin loop: nts=7; [5]; linked by [#42] summary: [1] 5 [A.641 A.647] 4 nts=7 UUAACUG A.U641,A.U642,A.A643,A.A644,A.C645,A.U646,A.G647 nts=5 UAACU A.U642,A.A643,A.A644,A.C645,A.U646 22 hairpin loop: nts=8; [6]; linked by [#48] summary: [1] 6 [A.712 A.719] 6 nts=8 GGUAACAC A.G712,A.G713,A.U714,A.A715,A.A716,A.C717,A.A718,A.C719 nts=6 GUAACA A.G713,A.U714,A.A715,A.A716,A.C717,A.A718 23 hairpin loop: nts=10; [8]; linked by [#50] summary: [1] 8 [A.744 A.753] 5 nts=10 UGUUGAAAAA A.U744,A.G745,A.U746,A.U747,A.G748,A.A749,A.A750,A.A751,A.A752,A.A753 nts=8 GUUGAAAA A.G745,A.U746,A.U747,A.G748,A.A749,A.A750,A.A751,A.A752 24 hairpin loop: nts=9; [7]; linked by [#51] summary: [1] 7 [A.778 A.786] 2 nts=9 GUGAAAGGC A.G778,A.U779,A.G780,A.A781,A.A782,A.A783,A.G784,A.G785,A.C786 nts=7 UGAAAGG A.U779,A.G780,A.A781,A.A782,A.A783,A.G784,A.G785 25 hairpin loop: nts=6; [4]; linked by [#53] summary: [1] 4 [A.826 A.831] 5 nts=6 UUUAGG A.U826,A.U827,A.U828,A.A829,A.G830,A.G831 nts=4 UUAG A.U827,A.U828,A.A829,A.G830 26 hairpin loop: nts=8; [6]; linked by [#-21] summary: [1] 6 [A.955 A.962] 1 nts=8 UGCUAACG A.U955,A.G956,A.C957,A.U958,A.A959,A.A960,A.C961,A.G962 nts=6 GCUAAC A.G956,A.C957,A.U958,A.A959,A.A960,A.C961 27 hairpin loop: nts=8; [6]; linked by [#60] summary: [1] 6 [A.978 A.985] 3 nts=8 GAAACAAC A.G978,A.A979,A.A980,A.A981,A.C982,A.A983,A.A984,A.C985 nts=6 AAACAA A.A979,A.A980,A.A981,A.C982,A.A983,A.A984 28 hairpin loop: nts=6; [4]; linked by [#68] summary: [1] 4 [A.1172 A.1177] 2 nts=6 CUUAUG A.C1172,A.U1173,A.U1174,A.A1175,A.U1176,A.G1177 nts=4 UUAU A.U1173,A.U1174,A.A1175,A.U1176 29 hairpin loop: nts=6; [4]; linked by [#73] summary: [1] 4 [A.1222 A.1227] 5 nts=6 UGUGAG A.U1222,A.G1223,A.U1224,A.G1225,A.A1226,A.G1227 nts=4 GUGA A.G1223,A.U1224,A.G1225,A.A1226 30 hairpin loop: nts=9; [7]; linked by [#75] summary: [1] 7 [A.1281 A.1289] 6 nts=9 GUGAAAAGC A.G1281,A.U1282,A.G1283,A.A1284,A.A1285,A.A1286,A.A1287,A.G1288,A.C1289 nts=7 UGAAAAG A.U1282,A.G1283,A.A1284,A.A1285,A.A1286,A.A1287,A.G1288 31 hairpin loop: nts=7; [5]; linked by [#-27] summary: [1] 5 [A.1324 A.1330] 1 nts=7 GUUAAUC A.G1324,A.U1325,A.U1326,A.A1327,A.A1328,A.U1329,A.C1330 nts=5 UUAAU A.U1325,A.U1326,A.A1327,A.A1328,A.U1329 32 hairpin loop: nts=6; [4]; linked by [#84] summary: [1] 4 [A.1363 A.1368] 3 nts=6 CGAAAG A.C1363,A.G1364,A.A1365,A.A1366,A.A1367,A.G1368 nts=4 GAAA A.G1364,A.A1365,A.A1366,A.A1367 33 hairpin loop: nts=10; [8]; linked by [#85] summary: [1] 8 [A.1389 A.1398] 5 nts=10 GUUAAUAUUC A.G1389,A.U1390,A.U1391,A.A1392,A.A1393,A.U1394,A.A1395,A.U1396,A.U1397,A.C1398 nts=8 UUAAUAUU A.U1390,A.U1391,A.A1392,A.A1393,A.U1394,A.A1395,A.U1396,A.U1397 34 hairpin loop: nts=9; [7]; linked by [#-30] summary: [1] 7 [A.1451 A.1459] 1 nts=9 CGACGGUUG A.C1451,A.G1452,A.A1453,A.C1454,A.G1455,A.G1456,A.U1457,A.U1458,A.G1459 nts=7 GACGGUU A.G1452,A.A1453,A.C1454,A.G1455,A.G1456,A.U1457,A.U1458 35 hairpin loop: nts=7; [5]; linked by [#97] summary: [1] 5 [A.1492 A.1498] 2 nts=7 GCAAAUC A.G1492,A.C1493,A.A1494,A.A1495,A.A1496,A.U1497,A.C1498 nts=5 CAAAU A.C1493,A.A1494,A.A1495,A.A1496,A.U1497 36 hairpin loop: nts=6; [4]; linked by [#98] summary: [1] 4 [A.1533 A.1538] 5 nts=6 CUACGG A.C1533,A.U1534,A.A1535,A.C1536,A.G1537,A.G1538 nts=4 UACG A.U1534,A.A1535,A.C1536,A.G1537 37 hairpin loop: nts=4; [2]; linked by [#-35] summary: [1] 2 [A.1565 A.1568] 1 nts=4 CAGG A.C1565,A.A1566,A.G1567,A.G1568 nts=2 AG A.A1566,A.G1567 38 hairpin loop: nts=8; [6]; linked by [#99] summary: [1] 6 [A.1612 A.1619] 2 nts=8 CGACACAG A.C1612,A.G1613,A.A1614,A.C1615,A.A1616,A.C1617,A.A1618,A.G1619 nts=6 GACACA A.G1613,A.A1614,A.C1615,A.A1616,A.C1617,A.A1618 39 hairpin loop: nts=11; [9]; linked by [#100] summary: [1] 9 [A.1628 A.1638] 2 nts=11 GUAGAGAAUAC A.G1628,A.U1629,A.A1630,A.G1631,A.A1632,A.G1633,A.A1634,A.A1635,A.U1636,A.A1637,A.C1638 nts=9 UAGAGAAUA A.U1629,A.A1630,A.G1631,A.A1632,A.G1633,A.A1634,A.A1635,A.U1636,A.A1637 40 hairpin loop: nts=6; [4]; linked by [#-38] summary: [1] 4 [A.1691 A.1696] 1 nts=6 CUUCGG A.C1691,A.U1692,A.U1693,A.C1694,A.G1695,A.G1696 nts=4 UUCG A.U1692,A.U1693,A.C1694,A.G1695 41 hairpin loop: nts=6; [4]; linked by [#-40] summary: [1] 4 [A.1728 A.1733] 1 nts=6 CUCGCG A.C1728,A.U1729,A.C1730,A.G1731,A.C1732,A.G1733 nts=4 UCGC A.U1729,A.C1730,A.G1731,A.C1732 42 hairpin loop: nts=5; [3]; linked by [#-41] summary: [1] 3 [A.1752 A.1756] 1 nts=5 CGAAG A.C1752,A.G1753,A.A1754,A.A1755,A.G1756 nts=3 GAA A.G1753,A.A1754,A.A1755 43 hairpin loop: nts=11; [9]; linked by [#110] summary: [1] 9 [A.1777 A.1787] 2 nts=11 UUUAUUAAAAA A.U1777,A.U1778,A.U1779,A.A1780,A.U1781,A.U1782,A.A1783,A.A1784,A.A1785,A.A1786,A.A1787 nts=9 UUAUUAAAA A.U1778,A.U1779,A.A1780,A.U1781,A.U1782,A.A1783,A.A1784,A.A1785,A.A1786 44 hairpin loop: nts=6; [4]; linked by [#113] summary: [1] 4 [A.1806 A.1811] 3 nts=6 CGAAAG A.C1806,A.G1807,A.A1808,A.A1809,A.A1810,A.G1811 nts=4 GAAA A.G1807,A.A1808,A.A1809,A.A1810 45 hairpin loop: nts=15; [13]; linked by [#-42] summary: [1] 13 [A.2020 A.2034] 1 nts=15 ACUCGCUGUGAAGAU A.A2020,A.C2021,A.U2022,A.C2023,A.G2024,A.C2025,A.U2026,A.G2027,A.U2028,A.G2029,A.A2030,A.A2031,A.G2032,A.A2033,A.U2034 nts=13 CUCGCUGUGAAGA A.C2021,A.U2022,A.C2023,A.G2024,A.C2025,A.U2026,A.G2027,A.U2028,A.G2029,A.A2030,A.A2031,A.G2032,A.A2033 46 hairpin loop: nts=10; [8]; linked by [#115] summary: [1] 8 [A.2027 A.2036] 5 nts=10 GUGAAGAUGC A.G2027,A.U2028,A.G2029,A.A2030,A.A2031,A.G2032,A.A2033,A.U2034,A.G2035,A.C2036 nts=8 UGAAGAUG A.U2028,A.G2029,A.A2030,A.A2031,A.G2032,A.A2033,A.U2034,A.G2035 47 hairpin loop: nts=6; [4]; linked by [#-45] summary: [1] 4 [A.2658 A.2663] 1 nts=6 CGAGAG A.C2658,A.G2659,A.A2660,A.G2661,A.A2662,A.G2663 nts=4 GAGA A.G2659,A.A2660,A.G2661,A.A2662 48 hairpin loop: nts=6; [4]; linked by [#126] summary: [1] 4 [A.2701 A.2706] 6 nts=6 UGCCAA A.U2701,A.G2702,A.C2703,A.C2704,A.A2705,A.A2706 nts=4 GCCA A.G2702,A.C2703,A.C2704,A.A2705 49 hairpin loop: nts=15; [13]; linked by [#128] summary: [1] 13 [A.2745 A.2759] 2 nts=15 CUGAAAGCAUCUAAG A.C2745,A.U2746,A.G2747,A.A2748,A.A2749,A.A2750,A.G2751,A.C2752,A.A2753,A.U2754,A.C2755,A.U2756,A.A2757,A.A2758,A.G2759 nts=13 UGAAAGCAUCUAA A.U2746,A.G2747,A.A2748,A.A2749,A.A2750,A.G2751,A.C2752,A.A2753,A.U2754,A.C2755,A.U2756,A.A2757,A.A2758 50 hairpin loop: nts=4; [2]; linked by [#-49] summary: [1] 2 [A.2796 A.2799] 1 nts=4 UUUA A.U2796,A.U2797,A.U2798,A.A2799 nts=2 UU A.U2797,A.U2798 51 hairpin loop: nts=9; [7]; linked by [#131] summary: [1] 7 [A.2819 A.2827] 5 nts=9 GAAGACGAC A.G2819,A.A2820,A.A2821,A.G2822,A.A2823,A.C2824,A.G2825,A.A2826,A.C2827 nts=7 AAGACGA A.A2820,A.A2821,A.G2822,A.A2823,A.C2824,A.G2825,A.A2826 52 hairpin loop: nts=6; [4]; linked by [#135] summary: [1] 4 [A.2856 A.2861] 5 nts=6 AGCGAU A.A2856,A.G2857,A.C2858,A.G2859,A.A2860,A.U2861 nts=4 GCGA A.G2857,A.C2858,A.G2859,A.A2860 **************************************************************************** List of 22 bulges 1 bulge: nts=5; [0,1]; linked by [#3,#4] summary: [2] 0 1 [A.36 A.444 A.37 A.442] 2 6 nts=5 GCGAC A.G36,A.C37,A.G442,A.A443,A.C444 nts=0 nts=1 A A.A443 2 bulge: nts=5; [0,1]; linked by [#46,#-16] summary: [2] 0 1 [A.697 A.765 A.698 A.763] 2 1 nts=5 GCGAC A.G697,A.C698,A.G763,A.A764,A.C765 nts=0 nts=1 A A.A764 3 bulge: nts=5; [0,1]; linked by [#-18,#54] summary: [2] 0 1 [A.837 A.942 A.838 A.940] 1 7 nts=5 CCGAG A.C837,A.C838,A.G940,A.A941,A.G942 nts=0 nts=1 A A.A941 4 bulge: nts=5; [0,1]; linked by [#55,#56] summary: [2] 0 1 [A.850 A.928 A.851 A.926] 3 6 nts=5 UCGAA A.U850,A.C851,A.G926,A.A927,A.A928 nts=0 nts=1 A A.A927 5 bulge: nts=5; [0,1]; linked by [#-20,#57] summary: [2] 0 1 [A.862 A.915 A.863 A.913] 1 2 nts=5 GAUGC A.G862,A.A863,A.U913,A.G914,A.C915 nts=0 nts=1 G A.G914 6 bulge: nts=5; [1,0]; linked by [#61,#62] summary: [2] 1 0 [A.994 A.1160 A.996 A.1159] 4 3 nts=5 CCAUG A.C994,A.C995,A.A996,A.U1159,A.G1160 nts=1 C A.C995 nts=0 7 bulge: nts=5; [1,0]; linked by [#-22,#65] summary: [2] 1 0 [A.1011 A.1150 A.1013 A.1149] 1 6 nts=5 GUCGC A.G1011,A.U1012,A.C1013,A.G1149,A.C1150 nts=1 U A.U1012 nts=0 8 bulge: nts=5; [0,1]; linked by [#69,#70] summary: [2] 0 1 [A.1197 A.1249 A.1198 A.1247] 2 5 nts=5 GUAGU A.G1197,A.U1198,A.A1247,A.G1248,A.U1249 nts=0 nts=1 G A.G1248 9 bulge: nts=5; [1,0]; linked by [#82,#-28] summary: [2] 1 0 [A.1351 A.1380 A.1353 A.1379] 3 1 nts=5 CUAUG A.C1351,A.U1352,A.A1353,A.U1379,A.G1380 nts=1 U A.U1352 nts=0 10 bulge: nts=5; [0,1]; linked by [#92,#-30] summary: [2] 0 1 [A.1450 A.1461 A.1451 A.1459] 6 1 nts=5 GCGUC A.G1450,A.C1451,A.G1459,A.U1460,A.C1461 nts=0 nts=1 U A.U1460 11 bulge: nts=5; [1,0]; linked by [#96,#97] summary: [2] 1 0 [A.1489 A.1500 A.1491 A.1499] 6 2 nts=5 CAGCG A.C1489,A.A1490,A.G1491,A.C1499,A.G1500 nts=1 A A.A1490 nts=0 12 bulge: nts=5; [1,0]; linked by [#107,#-40] summary: [2] 1 0 [A.1726 A.1734 A.1728 A.1733] 3 1 nts=5 CCCGG A.C1726,A.C1727,A.C1728,A.G1733,A.G1734 nts=1 C A.C1727 nts=0 13 bulge: nts=5; [0,1]; linked by [#108,#109] summary: [2] 0 1 [A.1770 A.1982 A.1771 A.1980] 7 2 nts=5 GCGAU A.G1770,A.C1771,A.G1980,A.A1981,A.U1982 nts=0 nts=1 A A.A1981 14 bulge: nts=5; [1,0]; linked by [#117,#118] summary: [2] 1 0 [A.2050 A.2618 A.2052 A.2617] 5 2 nts=5 CAAUG A.C2050,A.A2051,A.A2052,A.U2617,A.G2618 nts=1 A A.A2051 nts=0 15 bulge: nts=5; [0,1]; linked by [#129,#-49] summary: [2] 0 1 [A.2795 A.2801 A.2796 A.2799] 5 1 nts=5 CUAAG A.C2795,A.U2796,A.A2799,A.A2800,A.G2801 nts=0 nts=1 A A.A2800 16 bulge: nts=5; [0,1]; linked by [#132,#133] summary: [2] 0 1 [A.2838 A.2880 A.2839 A.2878] 3 5 nts=5 GGUAC A.G2838,A.G2839,A.U2878,A.A2879,A.C2880 nts=0 nts=1 A A.A2879 17 bulge: nts=6; [2,0]; linked by [#54,#-19] summary: [2] 2 0 [A.844 A.934 A.847 A.933] 7 1 nts=6 AAUUAU A.A844,A.A845,A.U846,A.U847,A.A933,A.U934 nts=2 AU A.A845,A.U846 nts=0 18 bulge: nts=6; [0,2]; linked by [#-19,#55] summary: [2] 0 2 [A.847 A.933 A.848 A.930] 1 3 nts=6 UCGUUA A.U847,A.C848,A.G930,A.U931,A.U932,A.A933 nts=0 nts=2 UU A.U931,A.U932 19 bulge: nts=6; [2,0]; linked by [#78,#-26] summary: [2] 2 0 [A.1310 A.1604 A.1313 A.1603] 2 1 nts=6 GGUUAC A.G1310,A.G1311,A.U1312,A.U1313,A.A1603,A.C1604 nts=2 GU A.G1311,A.U1312 nts=0 20 bulge: nts=6; [0,2]; linked by [#95,#-32] summary: [2] 0 2 [A.1481 A.1510 A.1482 A.1507] 3 1 nts=6 UGCAAG A.U1481,A.G1482,A.C1507,A.A1508,A.A1509,A.G1510 nts=0 nts=2 AA A.A1508,A.A1509 21 bulge: nts=6; [2,0]; linked by [#103,#-36] summary: [2] 2 0 [A.1666 A.1994 A.1669 A.1993] 2 1 nts=6 GGAAUC A.G1666,A.G1667,A.A1668,A.A1669,A.U1993,A.C1994 nts=2 GA A.G1667,A.A1668 nts=0 22 bulge: nts=6; [0,2]; linked by [#125,#126] summary: [2] 0 2 [A.2695 A.2714 A.2696 A.2711] 5 6 nts=6 UUACUG A.U2695,A.U2696,A.A2711,A.C2712,A.U2713,A.G2714 nts=0 nts=2 CU A.C2712,A.U2713 **************************************************************************** List of 70 internal loops 1 symmetric internal loop: nts=6; [1,1]; linked by [#2,#-1] summary: [2] 1 1 [A.22 A.518 A.24 A.516] 8 1 nts=6 CGGCCG A.C22,A.G23,A.G24,A.C516,A.C517,A.G518 nts=1 G A.G23 nts=1 C A.C517 2 symmetric internal loop: nts=6; [1,1]; linked by [#10,#11] summary: [2] 1 1 [A.77 A.109 A.79 A.107] 2 4 nts=6 GUCGGC A.G77,A.U78,A.C79,A.G107,A.G108,A.C109 nts=1 U A.U78 nts=1 G A.G108 3 symmetric internal loop: nts=6; [1,1]; linked by [#22,#23] summary: [2] 1 1 [A.286 A.354 A.288 A.352] 6 2 nts=6 UGUACA A.U286,A.G287,A.U288,A.A352,A.C353,A.A354 nts=1 G A.G287 nts=1 C A.C353 4 symmetric internal loop: nts=6; [1,1]; linked by [#23,#24] summary: [2] 1 1 [A.289 A.351 A.291 A.349] 2 2 nts=6 GUGUGC A.G289,A.U290,A.G291,A.U349,A.G350,A.C351 nts=1 U A.U290 nts=1 G A.G350 5 symmetric internal loop: nts=6; [1,1]; linked by [#26,#-7] summary: [2] 1 1 [A.303 A.314 A.305 A.312] 3 1 nts=6 GUCGGC A.G303,A.U304,A.C305,A.G312,A.G313,A.C314 nts=1 U A.U304 nts=1 G A.G313 6 symmetric internal loop: nts=6; [1,1]; linked by [#29,#-8] summary: [2] 1 1 [A.376 A.398 A.378 A.396] 2 1 nts=6 GGCGUC A.G376,A.G377,A.C378,A.G396,A.U397,A.C398 nts=1 G A.G377 nts=1 U A.U397 7 symmetric internal loop: nts=6; [1,1]; linked by [#-8,#30] summary: [2] 1 1 [A.378 A.396 A.380 A.394] 1 3 nts=6 CGGCUG A.C378,A.G379,A.G380,A.C394,A.U395,A.G396 nts=1 G A.G379 nts=1 U A.U395 8 symmetric internal loop: nts=6; [1,1]; linked by [#31,#32] summary: [2] 1 1 [A.407 A.420 A.409 A.418] 2 2 nts=6 GGGCUC A.G407,A.G408,A.G409,A.C418,A.U419,A.C420 nts=1 G A.G408 nts=1 U A.U419 9 symmetric internal loop: nts=6; [1,1]; linked by [#-11,#35] summary: [2] 1 1 [A.533 A.560 A.535 A.558] 1 2 nts=6 GUGUGC A.G533,A.U534,A.G535,A.U558,A.G559,A.C560 nts=1 U A.U534 nts=1 G A.G559 10 symmetric internal loop: nts=6; [1,1]; linked by [#-13,#-14] summary: [2] 1 1 [A.564 A.577 A.566 A.575] 1 1 nts=6 CCUAUG A.C564,A.C565,A.U566,A.A575,A.U576,A.G577 nts=1 C A.C565 nts=1 U A.U576 11 symmetric internal loop: nts=6; [1,1]; linked by [#43,#-15] summary: [2] 1 1 [A.672 A.808 A.674 A.806] 2 1 nts=6 CCGCUG A.C672,A.C673,A.G674,A.C806,A.U807,A.G808 nts=1 C A.C673 nts=1 U A.U807 12 symmetric internal loop: nts=6; [1,1]; linked by [#45,#46] summary: [2] 1 1 [A.694 A.768 A.696 A.766] 6 2 nts=6 UGGUUG A.U694,A.G695,A.G696,A.U766,A.U767,A.G768 nts=1 G A.G695 nts=1 U A.U767 13 symmetric internal loop: nts=6; [1,1]; linked by [#58,#59] summary: [2] 1 1 [A.949 A.968 A.951 A.966] 4 3 nts=6 GGCGUC A.G949,A.G950,A.C951,A.G966,A.U967,A.C968 nts=1 G A.G950 nts=1 U A.U967 14 symmetric internal loop: nts=6; [1,1]; linked by [#59,#-21] summary: [2] 1 1 [A.953 A.964 A.955 A.962] 3 1 nts=6 GGUGUC A.G953,A.G954,A.U955,A.G962,A.U963,A.C964 nts=1 G A.G954 nts=1 U A.U963 15 symmetric internal loop: nts=6; [1,1]; linked by [#72,#73] summary: [2] 1 1 [A.1216 A.1233 A.1218 A.1231] 2 5 nts=6 GUGUGC A.G1216,A.U1217,A.G1218,A.U1231,A.G1232,A.C1233 nts=1 U A.U1217 nts=1 G A.G1232 16 symmetric internal loop: nts=6; [1,1]; linked by [#77,#-25] summary: [2] 1 1 [A.1304 A.1624 A.1306 A.1622] 2 1 nts=6 ACCGGU A.A1304,A.C1305,A.C1306,A.G1622,A.G1623,A.U1624 nts=1 C A.C1305 nts=1 G A.G1623 17 symmetric internal loop: nts=6; [1,1]; linked by [#86,#87] summary: [2] 1 1 [A.1407 A.1595 A.1409 A.1593] 3 7 nts=6 GGUAUC A.G1407,A.G1408,A.U1409,A.A1593,A.U1594,A.C1595 nts=1 G A.G1408 nts=1 U A.U1594 18 symmetric internal loop: nts=6; [1,1]; linked by [#-32,#96] summary: [2] 1 1 [A.1482 A.1507 A.1484 A.1505] 1 6 nts=6 GGUAUC A.G1482,A.G1483,A.U1484,A.A1505,A.U1506,A.C1507 nts=1 G A.G1483 nts=1 U A.U1506 19 symmetric internal loop: nts=6; [1,1]; linked by [#102,#103] summary: [2] 1 1 [A.1663 A.1997 A.1665 A.1995] 8 2 nts=6 GAAUCC A.G1663,A.A1664,A.A1665,A.U1995,A.C1996,A.C1997 nts=1 A A.A1664 nts=1 C A.C1996 20 symmetric internal loop: nts=6; [1,1]; linked by [#111,#112] summary: [2] 1 1 [A.1795 A.1824 A.1797 A.1822] 4 2 nts=6 CUGCGG A.C1795,A.U1796,A.G1797,A.C1822,A.G1823,A.G1824 nts=1 U A.U1796 nts=1 G A.G1823 21 symmetric internal loop: nts=6; [1,1]; linked by [#-46,#124] summary: [2] 1 1 [A.2684 A.2725 A.2686 A.2723] 1 2 nts=6 UGGCUA A.U2684,A.G2685,A.G2686,A.C2723,A.U2724,A.A2725 nts=1 G A.G2685 nts=1 U A.U2724 22 symmetric internal loop: nts=6; [1,1]; linked by [#-47,#128] summary: [2] 1 1 [A.2742 A.2762 A.2744 A.2760] 1 2 nts=6 GUGCAC A.G2742,A.U2743,A.G2744,A.C2760,A.A2761,A.C2762 nts=1 U A.U2743 nts=1 A A.A2761 23 asymmetric internal loop: nts=7; [1,2]; linked by [#4,#5] summary: [2] 1 2 [A.42 A.437 A.44 A.434] 6 2 nts=7 AGAUCCU A.A42,A.G43,A.A44,A.U434,A.C435,A.C436,A.U437 nts=1 G A.G43 nts=2 CC A.C435,A.C436 24 asymmetric internal loop: nts=7; [2,1]; linked by [#49,#50] summary: [2] 2 1 [A.737 A.759 A.740 A.757] 2 5 nts=7 CGACGCG A.C737,A.G738,A.A739,A.C740,A.G757,A.C758,A.G759 nts=2 GA A.G738,A.A739 nts=1 C A.C758 25 asymmetric internal loop: nts=7; [1,2]; linked by [#-28,#83] summary: [2] 1 2 [A.1353 A.1379 A.1355 A.1376] 1 3 k-turn:undecided nts=7 AAGCGAU A.A1353,A.A1354,A.G1355,A.C1376,A.G1377,A.A1378,A.U1379 nts=1 A A.A1354 nts=2 GA A.G1377,A.A1378 26 symmetric internal loop: nts=8; [2,2]; linked by [#-3,#9] summary: [2] 2 2 [A.61 A.93 A.64 A.90] 1 3 nts=8 CUAAUAUG A.C61,A.U62,A.A63,A.A64,A.U90,A.A91,A.U92,A.G93 nts=2 UA A.U62,A.A63 nts=2 AU A.A91,A.U92 27 asymmetric internal loop: nts=8; [1,3]; linked by [#-6,#21] summary: [2] 1 3 [A.269 A.370 A.271 A.366] 1 4 nts=8 CAGCGAUG A.C269,A.A270,A.G271,A.C366,A.G367,A.A368,A.U369,A.G370 nts=1 A A.A270 nts=3 GAU A.G367,A.A368,A.U369 28 symmetric internal loop: nts=8; [2,2]; linked by [#35,#36] summary: [2] 2 2 [A.536 A.557 A.539 A.554] 2 5 nts=8 GGAGUGAC A.G536,A.G537,A.A538,A.G539,A.U554,A.G555,A.A556,A.C557 nts=2 GA A.G537,A.A538 nts=2 GA A.G555,A.A556 29 asymmetric internal loop: nts=8; [1,3]; linked by [#-17,#51] summary: [2] 1 3 [A.775 A.791 A.777 A.787] 1 2 nts=8 GGGCAAUC A.G775,A.G776,A.G777,A.C787,A.A788,A.A789,A.U790,A.C791 nts=1 G A.G776 nts=3 AAU A.A788,A.A789,A.U790 30 symmetric internal loop: nts=8; [2,2]; linked by [#67,#68] summary: [2] 2 2 [A.1168 A.1181 A.1171 A.1178] 5 2 nts=8 GACGCGUU A.G1168,A.A1169,A.C1170,A.G1171,A.C1178,A.G1179,A.U1180,A.U1181 nts=2 AC A.A1169,A.C1170 nts=2 GU A.G1179,A.U1180 31 symmetric internal loop: nts=8; [2,2]; linked by [#-44,#122] summary: [2] 2 2 [A.2646 A.2674 A.2649 A.2671] 1 4 nts=8 CUGCGUGG A.C2646,A.U2647,A.G2648,A.C2649,A.G2671,A.U2672,A.G2673,A.G2674 nts=2 UG A.U2647,A.G2648 nts=2 UG A.U2672,A.G2673 32 asymmetric internal loop: nts=8; [3,1]; linked by [#123,#-46] summary: [2] 3 1 [A.2680 A.2727 A.2684 A.2725] 5 1 nts=8 UCACUAAA A.U2680,A.C2681,A.A2682,A.C2683,A.U2684,A.A2725,A.A2726,A.A2727 nts=3 CAC A.C2681,A.A2682,A.C2683 nts=1 A A.A2726 33 asymmetric internal loop: nts=9; [3,2]; linked by [#70,#71] summary: [2] 3 2 [A.1202 A.1243 A.1206 A.1240] 5 3 nts=9 GUAAGUAUC A.G1202,A.U1203,A.A1204,A.A1205,A.G1206,A.U1240,A.A1241,A.U1242,A.C1243 nts=3 UAA A.U1203,A.A1204,A.A1205 nts=2 AU A.A1241,A.U1242 34 asymmetric internal loop: nts=9; [2,3]; linked by [#89,#90] summary: [2] 2 3 [A.1432 A.1561 A.1435 A.1557] 4 3 nts=9 GAAGCCUGC A.G1432,A.A1433,A.A1434,A.G1435,A.C1557,A.C1558,A.U1559,A.G1560,A.C1561 nts=2 AA A.A1433,A.A1434 nts=3 CUG A.C1558,A.U1559,A.G1560 35 asymmetric internal loop: nts=9; [2,3]; linked by [#90,#91] summary: [2] 2 3 [A.1437 A.1555 A.1440 A.1551] 3 5 nts=9 CUAUAAAUG A.C1437,A.U1438,A.A1439,A.U1440,A.A1551,A.A1552,A.A1553,A.U1554,A.G1555 nts=2 UA A.U1438,A.A1439 nts=3 AAU A.A1552,A.A1553,A.U1554 36 asymmetric internal loop: nts=9; [2,3]; linked by [#-34,#98] summary: [2] 2 3 [A.1526 A.1546 A.1529 A.1542] 1 5 nts=9 CGAGUGAAG A.C1526,A.G1527,A.A1528,A.G1529,A.U1542,A.G1543,A.A1544,A.A1545,A.G1546 nts=2 GA A.G1527,A.A1528 nts=3 GAA A.G1543,A.A1544,A.A1545 37 asymmetric internal loop: nts=9; [4,1]; linked by [#101,#102] summary: [2] 4 1 [A.1651 A.2006 A.1656 A.2004] 4 8 nts=9 GAGAACGAC A.G1651,A.A1652,A.G1653,A.A1654,A.A1655,A.C1656,A.G2004,A.A2005,A.C2006 nts=4 AGAA A.A1652,A.G1653,A.A1654,A.A1655 nts=1 A A.A2005 38 asymmetric internal loop: nts=9; [2,3]; linked by [#118,#119] summary: [2] 2 3 [A.2053 A.2616 A.2056 A.2612] 2 2 nts=9 GACGCUAUC A.G2053,A.A2054,A.C2055,A.G2056,A.C2612,A.U2613,A.A2614,A.U2615,A.C2616 nts=2 AC A.A2054,A.C2055 nts=3 UAU A.U2613,A.A2614,A.U2615 39 asymmetric internal loop: nts=9; [2,3]; linked by [#133,#134] summary: [2] 2 3 [A.2843 A.2874 A.2846 A.2870] 5 2 nts=9 GGUGCUAAC A.G2843,A.G2844,A.U2845,A.G2846,A.C2870,A.U2871,A.A2872,A.A2873,A.C2874 nts=2 GU A.G2844,A.U2845 nts=3 UAA A.U2871,A.A2872,A.A2873 40 asymmetric internal loop: nts=10; [2,4]; linked by [#24,#25] summary: [2] 2 4 [A.292 A.348 A.295 A.343] 2 3 nts=10 UUAGCAAAAA A.U292,A.U293,A.A294,A.G295,A.C343,A.A344,A.A345,A.A346,A.A347,A.A348 nts=2 UA A.U293,A.A294 nts=4 AAAA A.A344,A.A345,A.A346,A.A347 41 symmetric internal loop: nts=10; [3,3]; linked by [#62,#63] summary: [2] 3 3 [A.998 A.1157 A.1002 A.1153] 3 3 k-turn:undecided nts=10 CUAAGCGAAG A.C998,A.U999,A.A1000,A.A1001,A.G1002,A.C1153,A.G1154,A.A1155,A.A1156,A.G1157 nts=3 UAA A.U999,A.A1000,A.A1001 nts=3 GAA A.G1154,A.A1155,A.A1156 42 asymmetric internal loop: nts=10; [4,2]; linked by [#79,#-27] summary: [2] 4 2 [A.1319 A.1333 A.1324 A.1330] 6 1 nts=10 CCAACGCGGG A.C1319,A.C1320,A.A1321,A.A1322,A.C1323,A.G1324,A.C1330,A.G1331,A.G1332,A.G1333 nts=4 CAAC A.C1320,A.A1321,A.A1322,A.C1323 nts=2 GG A.G1331,A.G1332 43 symmetric internal loop: nts=10; [3,3]; linked by [#83,#84] summary: [2] 3 3 [A.1357 A.1374 A.1361 A.1370] 3 3 nts=10 CGAGGCGUAG A.C1357,A.G1358,A.A1359,A.G1360,A.G1361,A.C1370,A.G1371,A.U1372,A.A1373,A.G1374 nts=3 GAG A.G1358,A.A1359,A.G1360 nts=3 GUA A.G1371,A.U1372,A.A1373 44 asymmetric internal loop: nts=10; [1,5]; linked by [#87,#-29] summary: [2] 1 5 [A.1415 A.1587 A.1417 A.1581] 7 1 nts=10 UGCGCAUCAG A.U1415,A.G1416,A.C1417,A.G1581,A.C1582,A.A1583,A.U1584,A.C1585,A.A1586,A.G1587 nts=1 G A.G1416 nts=5 CAUCA A.C1582,A.A1583,A.U1584,A.C1585,A.A1586 45 symmetric internal loop: nts=10; [3,3]; linked by [#-29,#88] summary: [2] 3 3 [A.1417 A.1581 A.1421 A.1577] 1 4 nts=10 CGAAGCUAAG A.C1417,A.G1418,A.A1419,A.A1420,A.G1421,A.C1577,A.U1578,A.A1579,A.A1580,A.G1581 nts=3 GAA A.G1418,A.A1419,A.A1420 nts=3 UAA A.U1578,A.A1579,A.A1580 46 asymmetric internal loop: nts=10; [4,2]; linked by [#-36,#-37] summary: [2] 4 2 [A.1669 A.1993 A.1674 A.1990] 1 1 nts=10 ACUAGGCUGU A.A1669,A.C1670,A.U1671,A.A1672,A.G1673,A.G1674,A.C1990,A.U1991,A.G1992,A.U1993 nts=4 CUAG A.C1670,A.U1671,A.A1672,A.G1673 nts=2 UG A.U1991,A.G1992 47 symmetric internal loop: nts=10; [3,3]; linked by [#106,#107] summary: [2] 3 3 [A.1720 A.1740 A.1724 A.1736] 3 3 nts=10 UGAGGUGGAG A.U1720,A.G1721,A.A1722,A.G1723,A.G1724,A.U1736,A.G1737,A.G1738,A.A1739,A.G1740 nts=3 GAG A.G1721,A.A1722,A.G1723 nts=3 GGA A.G1737,A.G1738,A.A1739 48 symmetric internal loop: nts=10; [3,3]; linked by [#124,#125] summary: [2] 3 3 [A.2687 A.2722 A.2691 A.2718] 2 5 nts=10 UGUUCGGUAG A.U2687,A.G2688,A.U2689,A.U2690,A.C2691,A.G2718,A.G2719,A.U2720,A.A2721,A.G2722 nts=3 GUU A.G2688,A.U2689,A.U2690 nts=3 GUA A.G2719,A.U2720,A.A2721 49 asymmetric internal loop: nts=10; [4,2]; linked by [#-50,#130] summary: [2] 4 2 [A.2806 A.2892 A.2811 A.2889] 1 2 nts=10 CUGAAGCGUG A.C2806,A.U2807,A.G2808,A.A2809,A.A2810,A.G2811,A.C2889,A.G2890,A.U2891,A.G2892 nts=4 UGAA A.U2807,A.G2808,A.A2809,A.A2810 nts=2 GU A.G2890,A.U2891 50 asymmetric internal loop: nts=11; [3,4]; linked by [#-31,#94] summary: [2] 3 4 [A.1467 A.1525 A.1471 A.1520] 1 4 nts=11 UUAAGUGAUGA A.U1467,A.U1468,A.A1469,A.A1470,A.G1471,A.U1520,A.G1521,A.A1522,A.U1523,A.G1524,A.A1525 nts=3 UAA A.U1468,A.A1469,A.A1470 nts=4 GAUG A.G1521,A.A1522,A.U1523,A.G1524 51 asymmetric internal loop: nts=11; [4,3]; linked by [#134,#135] summary: [2] 4 3 [A.2847 A.2869 A.2852 A.2865] 2 5 nts=11 UGUAAGUUGAG A.U2847,A.G2848,A.U2849,A.A2850,A.A2851,A.G2852,A.U2865,A.U2866,A.G2867,A.A2868,A.G2869 nts=4 GUAA A.G2848,A.U2849,A.A2850,A.A2851 nts=3 UGA A.U2866,A.G2867,A.A2868 52 asymmetric internal loop: nts=12; [2,6]; linked by [#11,#12] summary: [2] 2 6 [A.82 A.104 A.85 A.97] 4 3 nts=12 UAAGCGUUAUAA A.U82,A.A83,A.A84,A.G85,A.C97,A.G98,A.U99,A.U100,A.A101,A.U102,A.A103,A.A104 nts=2 AA A.A83,A.A84 nts=6 GUUAUA A.G98,A.U99,A.U100,A.A101,A.U102,A.A103 53 symmetric internal loop: nts=12; [4,4]; linked by [#39,#40] summary: [2] 4 4 [A.605 A.623 A.610 A.618] 2 2 nts=12 GUUAACGGGAGC A.G605,A.U606,A.U607,A.A608,A.A609,A.C610,A.G618,A.G619,A.G620,A.A621,A.G622,A.C623 nts=4 UUAA A.U606,A.U607,A.A608,A.A609 nts=4 GGAG A.G619,A.G620,A.A621,A.G622 54 asymmetric internal loop: nts=12; [5,3]; linked by [#65,#-23] summary: [2] 5 3 [A.1018 A.1144 A.1024 A.1140] 6 1 nts=12 UUAAGUGCUAAA A.U1018,A.U1019,A.A1020,A.A1021,A.G1022,A.U1023,A.G1024,A.C1140,A.U1141,A.A1142,A.A1143,A.A1144 nts=5 UAAGU A.U1019,A.A1020,A.A1021,A.G1022,A.U1023 nts=3 UAA A.U1141,A.A1142,A.A1143 55 asymmetric internal loop: nts=12; [5,3]; linked by [#105,#106] summary: [2] 5 3 [A.1712 A.1746 A.1718 A.1742] 6 3 nts=12 UAUGUAGUGAAA A.U1712,A.A1713,A.U1714,A.G1715,A.U1716,A.A1717,A.G1718,A.U1742,A.G1743,A.A1744,A.A1745,A.A1746 nts=5 AUGUA A.A1713,A.U1714,A.G1715,A.U1716,A.A1717 nts=3 GAA A.G1743,A.A1744,A.A1745 56 symmetric internal loop: nts=12; [4,4]; linked by [#127,#-47] summary: [2] 4 4 [A.2737 A.2767 A.2742 A.2762] 2 1 nts=12 GAUAAGCGAAAC A.G2737,A.A2738,A.U2739,A.A2740,A.A2741,A.G2742,A.C2762,A.G2763,A.A2764,A.A2765,A.A2766,A.C2767 nts=4 AUAA A.A2738,A.U2739,A.A2740,A.A2741 nts=4 GAAA A.G2763,A.A2764,A.A2765,A.A2766 57 asymmetric internal loop: nts=13; [5,4]; linked by [#18,#19] summary: [2] 5 4 [A.239 A.258 A.245 A.253] 5 2 nts=13 CCAGUAGCGAACG A.C239,A.C240,A.A241,A.G242,A.U243,A.A244,A.G245,A.C253,A.G254,A.A255,A.A256,A.C257,A.G258 nts=5 CAGUA A.C240,A.A241,A.G242,A.U243,A.A244 nts=4 GAAC A.G254,A.A255,A.A256,A.C257 58 asymmetric internal loop: nts=13; [6,3]; linked by [#21,#22] summary: [2] 6 3 [A.274 A.363 A.281 A.359] 4 6 k-turn:reverse nts=13 CCUGAAUCGUGAG A.C274,A.C275,A.U276,A.G277,A.A278,A.A279,A.U280,A.C281,A.G359,A.U360,A.G361,A.A362,A.G363 nts=6 CUGAAU A.C275,A.U276,A.G277,A.A278,A.A279,A.U280 nts=3 UGA A.U360,A.G361,A.A362 59 asymmetric internal loop: nts=13; [3,6]; linked by [#-15,#44] summary: [2] 3 6 [A.674 A.806 A.678 A.799] 1 6 nts=13 GAAACGAGAUAGC A.G674,A.A675,A.A676,A.A677,A.C678,A.G799,A.A800,A.G801,A.A802,A.U803,A.A804,A.G805,A.C806 nts=3 AAA A.A675,A.A676,A.A677 nts=6 AGAUAG A.A800,A.G801,A.A802,A.U803,A.A804,A.G805 60 asymmetric internal loop: nts=13; [4,5]; linked by [#47,#48] summary: [2] 4 5 [A.702 A.730 A.707 A.724] 3 6 nts=13 UUGAAGUGGAGGA A.U702,A.U703,A.G704,A.A705,A.A706,A.G707,A.U724,A.G725,A.G726,A.A727,A.G728,A.G729,A.A730 nts=4 UGAA A.U703,A.G704,A.A705,A.A706 nts=5 GGAGG A.G725,A.G726,A.A727,A.G728,A.G729 61 asymmetric internal loop: nts=13; [6,3]; linked by [#71,#72] summary: [2] 6 3 [A.1208 A.1238 A.1215 A.1234] 3 2 k-turn:normal nts=13 CUGCGAAGUGGAG A.C1208,A.U1209,A.G1210,A.C1211,A.G1212,A.A1213,A.A1214,A.G1215,A.U1234,A.G1235,A.G1236,A.A1237,A.G1238 nts=6 UGCGAA A.U1209,A.G1210,A.C1211,A.G1212,A.A1213,A.A1214 nts=3 GGA A.G1235,A.G1236,A.A1237 62 asymmetric internal loop: nts=13; [4,5]; linked by [#104,#-38] summary: [2] 4 5 [A.1686 A.1702 A.1691 A.1696] 5 1 nts=13 CGUAACGGAGAAG A.C1686,A.G1687,A.U1688,A.A1689,A.A1690,A.C1691,A.G1696,A.G1697,A.A1698,A.G1699,A.A1700,A.A1701,A.G1702 nts=4 GUAA A.G1687,A.U1688,A.A1689,A.A1690 nts=5 GAGAA A.G1697,A.A1698,A.G1699,A.A1700,A.A1701 63 asymmetric internal loop: nts=13; [5,4]; linked by [#122,#-45] summary: [2] 5 4 [A.2652 A.2668 A.2658 A.2663] 4 1 nts=13 CUAGUACGGACCG A.C2652,A.U2653,A.A2654,A.G2655,A.U2656,A.A2657,A.C2658,A.G2663,A.G2664,A.A2665,A.C2666,A.C2667,A.G2668 nts=5 UAGUA A.U2653,A.A2654,A.G2655,A.U2656,A.A2657 nts=4 GACC A.G2664,A.A2665,A.C2666,A.C2667 64 symmetric internal loop: nts=14; [5,5]; linked by [#-1,#-2] summary: [2] 5 5 [A.24 A.516 A.30 A.510] 1 1 nts=14 GUGGAUGCUGAAAC A.G24,A.U25,A.G26,A.G27,A.A28,A.U29,A.G30,A.C510,A.U511,A.G512,A.A513,A.A514,A.A515,A.C516 nts=5 UGGAU A.U25,A.G26,A.G27,A.A28,A.U29 nts=5 UGAAA A.U511,A.G512,A.A513,A.A514,A.A515 65 symmetric internal loop: nts=14; [5,5]; linked by [#56,#-20] summary: [2] 5 5 [A.856 A.921 A.862 A.915] 6 1 nts=14 GGGGUAGCGAAUAC A.G856,A.G857,A.G858,A.G859,A.U860,A.A861,A.G862,A.C915,A.G916,A.A917,A.A918,A.U919,A.A920,A.C921 nts=5 GGGUA A.G857,A.G858,A.G859,A.U860,A.A861 nts=5 GAAUA A.G916,A.A917,A.A918,A.U919,A.A920 66 asymmetric internal loop: nts=14; [3,7]; linked by [#120,#121] summary: [2] 3 7 [A.2636 A.2782 A.2640 A.2774] 7 4 nts=14 CUGAGCGAGAUGAG A.C2636,A.U2637,A.G2638,A.A2639,A.G2640,A.C2774,A.G2775,A.A2776,A.G2777,A.A2778,A.U2779,A.G2780,A.A2781,A.G2782 nts=3 UGA A.U2637,A.G2638,A.A2639 nts=7 GAGAUGA A.G2775,A.A2776,A.G2777,A.A2778,A.U2779,A.G2780,A.A2781 67 asymmetric internal loop: nts=15; [5,6]; linked by [#16,#-4] summary: [2] 5 6 [A.188 A.208 A.194 A.201] 5 1 nts=15 GGAACUGCUAAGUAC A.G188,A.G189,A.A190,A.A191,A.C192,A.U193,A.G194,A.C201,A.U202,A.A203,A.A204,A.G205,A.U206,A.A207,A.C208 nts=5 GAACU A.G189,A.A190,A.A191,A.C192,A.U193 nts=6 UAAGUA A.U202,A.A203,A.A204,A.G205,A.U206,A.A207 68 asymmetric internal loop: nts=15; [6,5]; linked by [#-24,#74] summary: [2] 6 5 [A.1262 A.2017 A.1269 A.2011] 1 2 nts=15 AUAAGUAAUGAAAUU A.A1262,A.U1263,A.A1264,A.A1265,A.G1266,A.U1267,A.A1268,A.A1269,A.U2011,A.G2012,A.A2013,A.A2014,A.A2015,A.U2016,A.U2017 nts=6 UAAGUA A.U1263,A.A1264,A.A1265,A.G1266,A.U1267,A.A1268 nts=5 GAAAU A.G2012,A.A2013,A.A2014,A.A2015,A.U2016 69 asymmetric internal loop: nts=16; [5,7]; linked by [#112,#113] summary: [2] 5 7 [A.1798 A.1821 A.1804 A.1813] 2 3 k-turn:undecided nts=16 UGCAAACGGACGUAUA A.U1798,A.G1799,A.C1800,A.A1801,A.A1802,A.A1803,A.C1804,A.G1813,A.G1814,A.A1815,A.C1816,A.G1817,A.U1818,A.A1819,A.U1820,A.A1821 nts=5 GCAAA A.G1799,A.C1800,A.A1801,A.A1802,A.A1803 nts=7 GACGUAU A.G1814,A.A1815,A.C1816,A.G1817,A.U1818,A.A1819,A.U1820 70 asymmetric internal loop: nts=18; [2,12]; linked by [#-9,#34] summary: [2] 2 12 [A.481 A.509 A.484 A.496] 1 4 nts=18 GAACGAGUGAAAAAGAAC A.G481,A.A482,A.A483,A.C484,A.G496,A.A497,A.G498,A.U499,A.G500,A.A501,A.A502,A.A503,A.A504,A.A505,A.G506,A.A507,A.A508,A.C509 nts=2 AA A.A482,A.A483 nts=12 AGUGAAAAAGAA A.A497,A.G498,A.U499,A.G500,A.A501,A.A502,A.A503,A.A504,A.A505,A.G506,A.A507,A.A508 **************************************************************************** List of 24 junctions 1 3-way junction: nts=8; [1,0,1]; linked by [#-48,#129,#-50] summary: [3] 1 0 1 [A.2789 A.2894 A.2791 A.2805 A.2806 A.2892] 1 5 1 nts=8 CUGCCGAG A.C2789,A.U2790,A.G2791,A.C2805,A.C2806,A.G2892,A.A2893,A.G2894 nts=1 U A.U2790 nts=0 nts=1 A A.A2893 2 3-way junction: nts=12; [1,3,2]; linked by [#-16,#47,#49] summary: [3] 1 3 2 [A.698 A.763 A.700 A.732 A.736 A.760] 1 3 2 nts=12 CAGCGAACGAUG A.C698,A.A699,A.G700,A.C732,A.G733,A.A734,A.A735,A.C736,A.G760,A.A761,A.U762,A.G763 nts=1 A A.A699 nts=3 GAA A.G733,A.A734,A.A735 nts=2 AU A.A761,A.U762 3 3-way junction: nts=13; [4,1,2]; linked by [#76,#77,#100] summary: [3] 4 1 2 [A.1298 A.1642 A.1303 A.1625 A.1627 A.1639] 4 2 2 nts=13 CGGAAGCAGCAAG A.C1298,A.G1299,A.G1300,A.A1301,A.A1302,A.G1303,A.C1625,A.A1626,A.G1627,A.C1639,A.A1640,A.A1641,A.G1642 nts=4 GGAA A.G1299,A.G1300,A.A1301,A.A1302 nts=1 A A.A1626 nts=2 AA A.A1640,A.A1641 4 3-way junction: nts=14; [0,5,3]; linked by [#7,#8,#10] summary: [3] 0 5 3 [A.56 A.114 A.57 A.70 A.76 A.110] 3 2 2 nts=14 ACGAUAAGCGAUUU A.A56,A.C57,A.G70,A.A71,A.U72,A.A73,A.A74,A.G75,A.C76,A.G110,A.A111,A.U112,A.U113,A.U114 nts=0 nts=5 AUAAG A.A71,A.U72,A.A73,A.A74,A.G75 nts=3 AUU A.A111,A.U112,A.U113 5 3-way junction: nts=14; [5,1,2]; linked by [#44,#45,#-17] summary: [3] 5 1 2 [A.683 A.794 A.689 A.773 A.775 A.791] 6 6 1 nts=14 UGAUCUAUGGCAAA A.U683,A.G684,A.A685,A.U686,A.C687,A.U688,A.A689,A.U773,A.G774,A.G775,A.C791,A.A792,A.A793,A.A794 nts=5 GAUCU A.G684,A.A685,A.U686,A.C687,A.U688 nts=1 G A.G774 nts=2 AA A.A792,A.A793 6 3-way junction: nts=14; [2,5,1]; linked by [#-25,#78,#99] summary: [3] 2 5 1 [A.1306 A.1622 A.1309 A.1605 A.1611 A.1620] 1 2 2 nts=14 CAAGCCCAAACGUG A.C1306,A.A1307,A.A1308,A.G1309,A.C1605,A.C1606,A.C1607,A.A1608,A.A1609,A.A1610,A.C1611,A.G1620,A.U1621,A.G1622 nts=2 AA A.A1307,A.A1308 nts=5 CCAAA A.C1606,A.C1607,A.A1608,A.A1609,A.A1610 nts=1 U A.U1621 7 3-way junction: nts=15; [4,0,5]; linked by [#88,#89,#-35] summary: [3] 4 0 5 [A.1424 A.1574 A.1429 A.1564 A.1565 A.1568] 4 4 1 nts=15 GGGACGCCGAAAAGC A.G1424,A.G1425,A.G1426,A.A1427,A.C1428,A.G1429,A.C1564,A.C1565,A.G1568,A.A1569,A.A1570,A.A1571,A.A1572,A.G1573,A.C1574 nts=4 GGAC A.G1425,A.G1426,A.A1427,A.C1428 nts=0 nts=5 AAAAG A.A1569,A.A1570,A.A1571,A.A1572,A.G1573 8 3-way junction: nts=17; [2,4,5]; linked by [#130,#131,#132] summary: [3] 2 4 5 [A.2812 A.2888 A.2815 A.2831 A.2836 A.2882] 2 5 3 nts=17 GAACGUUGAUAAUGAAC A.G2812,A.A2813,A.A2814,A.C2815,A.G2831,A.U2832,A.U2833,A.G2834,A.A2835,A.U2836,A.A2882,A.A2883,A.U2884,A.G2885,A.A2886,A.A2887,A.C2888 nts=2 AA A.A2813,A.A2814 nts=4 UUGA A.U2832,A.U2833,A.G2834,A.A2835 nts=5 AUGAA A.A2883,A.U2884,A.G2885,A.A2886,A.A2887 9 4-way junction: nts=8; [0,0,0,0]; linked by [#91,#92,#-31,#-34] summary: [4] 0 0 0 0 [A.1444 A.1547 A.1445 A.1466 A.1467 A.1525 A.1526 A.1546] 5 6 1 1 nts=8 GGUUACGC A.G1444,A.G1445,A.U1466,A.U1467,A.A1525,A.C1526,A.G1546,A.C1547 nts=0 nts=0 nts=0 nts=0 10 4-way junction: nts=13; [2,1,0,2]; linked by [#8,#-3,#12,#9] summary: [4] 2 1 0 2 [A.58 A.69 A.61 A.93 A.95 A.87 A.88 A.66] 2 1 3 3 nts=13 GUGCGAAUGCUGC A.G58,A.U59,A.G60,A.C61,A.G93,A.A94,A.A95,A.U87,A.G88,A.C66,A.U67,A.G68,A.C69 nts=2 UG A.U59,A.G60 nts=1 A A.A94 nts=0 nts=2 UG A.U67,A.G68 11* 4-way junction: nts=13; [3,1,0,1]; linked by [#-30,#93,#126,#93] summary: [4] 3 1 0 1 [A.1451 A.1459 A.1455 A.2704 A.2706 A.2701 A.2702 A.1457] 1 3 6 3 nts=13 CGACGCAAUGUUG A.C1451,A.G1452,A.A1453,A.C1454,A.G1455,A.C2704,A.A2705,A.A2706,A.U2701,A.G2702,A.U1457,A.U1458,A.G1459 nts=3 GAC A.G1452,A.A1453,A.C1454 nts=1 A A.A2705 nts=0 nts=1 U A.U1458 12 4-way junction: nts=15; [5,0,2,0]; linked by [#74,#75,#76,#101] summary: [4] 5 0 2 0 [A.1270 A.2010 A.1276 A.1294 A.1295 A.1645 A.1648 A.2009] 2 6 4 4 nts=15 CGAUAAAUCGCUUAG A.C1270,A.G1271,A.A1272,A.U1273,A.A1274,A.A1275,A.A1276,A.U1294,A.C1295,A.G1645,A.C1646,A.U1647,A.U1648,A.A2009,A.G2010 nts=5 GAUAA A.G1271,A.A1272,A.U1273,A.A1274,A.A1275 nts=0 nts=2 CU A.C1646,A.U1647 nts=0 13 4-way junction: nts=17; [2,1,4,2]; linked by [#121,#-44,#123,#127] summary: [4] 2 1 4 2 [A.2643 A.2771 A.2646 A.2674 A.2676 A.2731 A.2736 A.2768] 4 1 5 2 nts=17 GGGCGACGGAAGAUUGC A.G2643,A.G2644,A.G2645,A.C2646,A.G2674,A.A2675,A.C2676,A.G2731,A.G2732,A.A2733,A.A2734,A.G2735,A.A2736,A.U2768,A.U2769,A.G2770,A.C2771 nts=2 GG A.G2644,A.G2645 nts=1 A A.A2675 nts=4 GAAG A.G2732,A.A2733,A.A2734,A.G2735 nts=2 UG A.U2769,A.G2770 14 4-way junction: nts=20; [0,4,6,2]; linked by [#20,#-6,#29,#31] summary: [4] 0 4 6 2 [A.268 A.424 A.269 A.370 A.375 A.399 A.406 A.421] 3 1 2 2 nts=20 CCGAGUAGUGAAUAUGCAAG A.C268,A.C269,A.G370,A.A371,A.G372,A.U373,A.A374,A.G375,A.U399,A.G400,A.A401,A.A402,A.U403,A.A404,A.U405,A.G406,A.C421,A.A422,A.A423,A.G424 nts=0 nts=4 AGUA A.A371,A.G372,A.U373,A.A374 nts=6 GAAUAU A.G400,A.A401,A.A402,A.U403,A.A404,A.U405 nts=2 AA A.A422,A.A423 15 4-way junction: nts=20; [2,3,2,5]; linked by [#38,#39,#41,#42] summary: [4] 2 3 2 5 [A.601 A.656 A.604 A.624 A.628 A.635 A.638 A.650] 13 2 2 4 nts=20 CAAGCGAAGCGAGCGUUAAG A.C601,A.A602,A.A603,A.G604,A.C624,A.G625,A.A626,A.A627,A.G628,A.C635,A.G636,A.A637,A.G638,A.C650,A.G651,A.U652,A.U653,A.A654,A.A655,A.G656 nts=2 AA A.A602,A.A603 nts=3 GAA A.G625,A.A626,A.A627 nts=2 GA A.G636,A.A637 nts=5 GUUAA A.G651,A.U652,A.U653,A.A654,A.A655 16 4-way junction: nts=39; [4,15,12,0]; linked by [#-2,#3,#33,#-9] summary: [4] 4 15 12 0 [A.30 A.510 A.35 A.445 A.461 A.468 A.481 A.509] 1 2 2 1 nts=39 GCCCUGCGAUAGUGAACCAGUACGGAAAGGCGAAAAGCC A.G30,A.C31,A.C32,A.C33,A.U34,A.G35,A.C445,A.G446,A.A447,A.U448,A.A449,A.G450,A.U451,A.G452,A.A453,A.A454,A.C455,A.C456,A.A457,A.G458,A.U459,A.A460,A.C461,A.G468,A.G469,A.A470,A.A471,A.A472,A.G473,A.G474,A.C475,A.G476,A.A477,A.A478,A.A479,A.A480,A.G481,A.C509,A.C510 nts=4 CCCU A.C31,A.C32,A.C33,A.U34 nts=15 GAUAGUGAACCAGUA A.G446,A.A447,A.U448,A.A449,A.G450,A.U451,A.G452,A.A453,A.A454,A.C455,A.C456,A.A457,A.G458,A.U459,A.A460 nts=12 GAAAGGCGAAAA A.G469,A.A470,A.A471,A.A472,A.G473,A.G474,A.C475,A.G476,A.A477,A.A478,A.A479,A.A480 nts=0 17 5-way junction: nts=22; [6,4,0,1,1]; linked by [#6,#7,#13,#14,#15] summary: [5] 6 4 0 1 1 [A.47 A.178 A.54 A.116 A.121 A.130 A.131 A.148 A.150 A.176] 2 3 3 7 9 nts=22 CGAUGAAGCGAAUGCAUAUAGG A.C47,A.G48,A.A49,A.U50,A.G51,A.A52,A.A53,A.G54,A.C116,A.G117,A.A118,A.A119,A.U120,A.G121,A.C130,A.A131,A.U148,A.A149,A.U150,A.A176,A.G177,A.G178 nts=6 GAUGAA A.G48,A.A49,A.U50,A.G51,A.A52,A.A53 nts=4 GAAU A.G117,A.A118,A.A119,A.U120 nts=0 nts=1 A A.A149 nts=1 G A.G177 18 5-way junction: nts=23; [4,2,2,0,5]; linked by [#37,#38,#43,#52,#69] summary: [5] 4 2 2 0 5 [A.584 A.1256 A.589 A.668 A.671 A.809 A.812 A.1195 A.1196 A.1250] 6 13 2 6 2 nts=23 CGACUUAGACGUUCGCGCGAAUG A.C584,A.G585,A.A586,A.C587,A.U588,A.U589,A.A668,A.G669,A.A670,A.C671,A.G809,A.U810,A.U811,A.C812,A.G1195,A.C1196,A.G1250,A.C1251,A.G1252,A.A1253,A.A1254,A.U1255,A.G1256 nts=4 GACU A.G585,A.A586,A.C587,A.U588 nts=2 GA A.G669,A.A670 nts=2 UU A.U810,A.U811 nts=0 nts=5 CGAAU A.C1251,A.G1252,A.A1253,A.A1254,A.U1255 19 5-way junction: nts=25; [7,0,0,7,1]; linked by [#-37,#104,#105,#-41,#108] summary: [5] 7 0 0 7 1 [A.1674 A.1990 A.1682 A.1706 A.1707 A.1751 A.1752 A.1756 A.1764 A.1988] 1 5 6 1 7 nts=25 GCAAAAUGGCGUCGAUACCAGCGGC A.G1674,A.C1675,A.A1676,A.A1677,A.A1678,A.A1679,A.U1680,A.G1681,A.G1682,A.C1706,A.G1707,A.U1751,A.C1752,A.G1756,A.A1757,A.U1758,A.A1759,A.C1760,A.C1761,A.A1762,A.G1763,A.C1764,A.G1988,A.G1989,A.C1990 nts=7 CAAAAUG A.C1675,A.A1676,A.A1677,A.A1678,A.A1679,A.U1680,A.G1681 nts=0 nts=0 nts=7 AUACCAG A.A1757,A.U1758,A.A1759,A.C1760,A.C1761,A.A1762,A.G1763 nts=1 G A.G1989 20 6-way junction: nts=22; [1,1,0,2,1,5]; linked by [#-12,#-13,#37,#-24,#-42,#115] summary: [6] 1 1 0 2 1 5 [A.562 A.2033 A.564 A.577 A.579 A.1261 A.1262 A.2017 A.2020 A.2034 A.2036 A.2027] 1 1 6 1 1 5 nts=22 UACGGGCAUGAAUGCGUGAAGA A.U562,A.A563,A.C564,A.G577,A.G578,A.G579,A.C1261,A.A1262,A.U2017,A.G2018,A.A2019,A.A2020,A.U2034,A.G2035,A.C2036,A.G2027,A.U2028,A.G2029,A.A2030,A.A2031,A.G2032,A.A2033 nts=1 A A.A563 nts=1 G A.G578 nts=0 nts=2 GA A.G2018,A.A2019 nts=1 G A.G2035 nts=5 UGAAG A.U2028,A.G2029,A.A2030,A.A2031,A.G2032 21* 6-way junction: nts=29; [3,0,0,5,6,3]; linked by [#25,#26,#27,#28,#27,#28] summary: [6] 3 0 0 5 6 3 [A.297 A.341 A.301 A.316 A.317 A.334 A.335 A.327 A.333 A.318 A.325 A.337] 3 3 2 3 2 3 nts=29 GGAAGCGCCGUGACAGCGAUACAGCGUAC A.G297,A.G298,A.A299,A.A300,A.G301,A.C316,A.G317,A.C334,A.C335,A.G327,A.U328,A.G329,A.A330,A.C331,A.A332,A.G333,A.C318,A.G319,A.A320,A.U321,A.A322,A.C323,A.A324,A.G325,A.C337,A.G338,A.U339,A.A340,A.C341 nts=3 GAA A.G298,A.A299,A.A300 nts=0 nts=0 nts=5 UGACA A.U328,A.G329,A.A330,A.C331,A.A332 nts=6 GAUACA A.G319,A.A320,A.U321,A.A322,A.C323,A.A324 nts=3 GUA A.G338,A.U339,A.A340 22* 6-way junction: nts=32; [0,1,5,11,3,0]; linked by [#63,#64,#-23,#66,#64,#-22] summary: [6] 0 1 5 11 3 0 [A.1004 A.1151 A.1005 A.1138 A.1140 A.1024 A.1030 A.1124 A.1136 A.1007 A.1011 A.1150] 3 3 1 2 3 1 nts=32 UCGGCGGGAAACGGAAGAUGUAACGCAAAGCA A.U1004,A.C1005,A.G1138,A.G1139,A.C1140,A.G1024,A.G1025,A.G1026,A.A1027,A.A1028,A.A1029,A.C1030,A.G1124,A.G1125,A.A1126,A.A1127,A.G1128,A.A1129,A.U1130,A.G1131,A.U1132,A.A1133,A.A1134,A.C1135,A.G1136,A.C1007,A.A1008,A.A1009,A.A1010,A.G1011,A.C1150,A.A1151 nts=0 nts=1 G A.G1139 nts=5 GGAAA A.G1025,A.G1026,A.A1027,A.A1028,A.A1029 nts=11 GAAGAUGUAAC A.G1125,A.A1126,A.A1127,A.G1128,A.A1129,A.U1130,A.G1131,A.U1132,A.A1133,A.A1134,A.C1135 nts=3 AAA A.A1008,A.A1009,A.A1010 nts=0 23 6-way junction: nts=39; [0,4,11,3,3,6]; linked by [#5,#6,#16,#17,#18,#20] summary: [6] 0 4 11 3 3 6 [A.45 A.433 A.46 A.179 A.184 A.212 A.224 A.231 A.235 A.262 A.266 A.426] 2 2 5 2 5 3 nts=39 GGCGAACCGAGGAAAAGAAAUAGAUUAGCAGCUAAAUAC A.G45,A.G46,A.C179,A.G180,A.A181,A.A182,A.C183,A.C184,A.G212,A.A213,A.G214,A.G215,A.A216,A.A217,A.A218,A.A219,A.G220,A.A221,A.A222,A.A223,A.U224,A.A231,A.G232,A.A233,A.U234,A.U235,A.A262,A.G263,A.C264,A.A265,A.G266,A.C426,A.U427,A.A428,A.A429,A.A430,A.U431,A.A432,A.C433 nts=0 nts=4 GAAC A.G180,A.A181,A.A182,A.C183 nts=11 AGGAAAAGAAA A.A213,A.G214,A.G215,A.A216,A.A217,A.A218,A.A219,A.G220,A.A221,A.A222,A.A223 nts=3 GAU A.G232,A.A233,A.U234 nts=3 GCA A.G263,A.C264,A.A265 nts=6 UAAAUA A.U427,A.A428,A.A429,A.A430,A.U431,A.A432 24* 9-way junction: nts=27; [0,4,0,1,1,2,0,0,1]; linked by [#-26,#79,#80,#86,#81,#82,#85,#80,#81] summary: [9] 0 4 0 1 1 2 0 0 1 [A.1313 A.1603 A.1314 A.1338 A.1343 A.1404 A.1405 A.1597 A.1599 A.1347 A.1349 A.1382 A.1385 A.1402 A.1403 A.1344 A.1345 A.1601] 1 6 2 3 3 3 5 2 3 nts=27 UCGGUGAGCUAAUACCGAAAUAUCGUA A.U1313,A.C1314,A.G1338,A.G1339,A.U1340,A.G1341,A.A1342,A.G1343,A.C1404,A.U1405,A.A1597,A.A1598,A.U1599,A.A1347,A.C1348,A.C1349,A.G1382,A.A1383,A.A1384,A.A1385,A.U1402,A.A1403,A.U1344,A.C1345,A.G1601,A.U1602,A.A1603 nts=0 nts=4 GUGA A.G1339,A.U1340,A.G1341,A.A1342 nts=0 nts=1 A A.A1598 nts=1 C A.C1348 nts=2 AA A.A1383,A.A1384 nts=0 nts=0 nts=1 U A.U1602 **************************************************************************** List of 22 non-loop single-stranded segments 1 nts=6 GACUAA A.G9,A.A10,A.C11,A.U12,A.A13,A.A14 2 nts=5 ACAAG A.A526,A.C527,A.A528,A.A529,A.G530 3 nts=1 A A.A532 4 nts=1 G A.G561 5 nts=4 GAAA A.G818,A.A819,A.A820,A.A821 6 nts=1 G A.G836 7 nts=7* CACCAAA A.C865,A.A866,A.C867,A.C908,A.A909,A.A910,A.A911 8 nts=3 ACA A.A943,A.C944,A.A945 9 nts=4* AAGA A.A972,A.A973,A.G974,A.A975 10 nts=3 AGA A.A988,A.G989,A.A990 11 nts=4 GGUA A.G1186,A.G1187,A.U1188,A.A1189 12 nts=4 GUAG A.G1475,A.U1476,A.A1477,A.G1478 13 nts=3 UGA A.U1513,A.G1514,A.A1515 14 nts=3 ACU A.A1773,A.C1774,A.U1775 15 nts=3 ACA A.A1789,A.C1790,A.A1791 16 nts=1 G A.G1828 17 nts=6* UGGAAU A.U1834,A.G1835,A.G1968,A.A1969,A.A1970,A.U1971 18 nts=3 UAA A.U1976,A.A1977,A.A1978 19 nts=2 UA A.U2041,A.A2042 20 nts=5* AAAUC A.A2058,A.A2059,A.A2060,A.U2609,A.C2610 21 nts=3 GCU A.G2627,A.C2628,A.U2629 22 nts=1 U A.U2903 **************************************************************************** List of 4 kissing loop interactions 1 isolated-pair #-5 between hairpin loops #7 and #9 2 isolated-pair #-3 between hairpin loops #1 and #3 3 stem #9 between hairpin loops #1 and #3 4 stem #93 between hairpin loops #34 and #48 **************************************************************************** List of 73 A-minor motifs (types I, II, or X) 1 type=X A|C-G A.A71|A.C57,A.G70 WC +A.C57 H-bonds[0]: "" -A.G70 H-bonds[1]: "N1-N2(amino)[3.59]" 2 type=I A|G-C A.A73|A.G58,A.C69 WC +A.G58 H-bonds[2]: "O2'(hydroxyl)-N2(amino)[3.22],N3-N2(amino)[3.21]" -A.C69 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.98],O2'(hydroxyl)-O2(carbonyl)[2.54]" 3 type=I A|G-C A.A103|A.G85,A.C97 WC +A.G85 H-bonds[2]: "N1-O2'(hydroxyl)[2.91],N3-N2(amino)[2.77]" -A.C97 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[2.65]" 4 type=II A|G-C A.A126|A.G54,A.C116 WC +A.G54 H-bonds[1]: "N1-N2(amino)[3.54]" -A.C116 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.16],N3-O2'(hydroxyl)[2.49]" 5 type=I A|G-C A.A127|A.G55,A.C115 WC +A.G55 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.13],N1-O2'(hydroxyl)[3.17],N3-N2(amino)[2.82]" -A.C115 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.53]" 6 type=X A|U-G A.A196|A.U826,A.G831 Wobble -A.U826 H-bonds[0]: "" +A.G831 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[2.56]" 7 type=X A|C-G A.A216|A.C183,A.G214 ~Wobble +A.C183 H-bonds[0]: "" -A.G214 H-bonds[3]: "O2'(hydroxyl)-N2(amino)[3.12],O2'(hydroxyl)-N3[2.98],N3-N2(amino)[3.20]" 8 type=I A|G-C A.A223|A.G407,A.C420 WC +A.G407 H-bonds[1]: "N1-O2'(hydroxyl)[3.23]" -A.C420 H-bonds[0]: "" 9 type=X A|G-C A.A227|A.G410,A.C417 WC +A.G410 H-bonds[2]: "N7-O2'(hydroxyl)[3.28],N6(amino)-N3[2.86]" -A.C417 H-bonds[0]: "" 10 type=X A|G-C A.A251|A.G194,A.C201 WC -A.G194 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.30],N3-N2(amino)[3.40]" +A.C201 H-bonds[0]: "" 11 type=I A|G-C A.A294|A.G80,A.C106 WC +A.G80 H-bonds[2]: "O2'(hydroxyl)-N2(amino)[3.52],N3-N2(amino)[3.55]" -A.C106 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.88],O2'(hydroxyl)-O2(carbonyl)[2.58]" 12 type=II A|G-C A.A299|A.G319,A.C323 ~Wobble -A.G319 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.14],N3-O2'(hydroxyl)[2.97]" +A.C323 H-bonds[0]: "" 13 type=I A|C-G A.A300|A.C318,A.G333 WC -A.C318 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[2.74]" +A.G333 H-bonds[1]: "N3-N2(amino)[2.83]" 14 type=X A|C-G A.A346|A.C79,A.G107 WC -A.C79 H-bonds[1]: "N3-O2'(hydroxyl)[2.84]" +A.G107 H-bonds[1]: "N1-N2(amino)[3.17]" 15 type=II A|G-C A.A402|A.G406,A.C421 WC -A.G406 H-bonds[2]: "O2'(hydroxyl)-O3'[3.13],O2'(hydroxyl)-O2'(hydroxyl)[2.97]" +A.C421 H-bonds[0]: "" 16 type=X A|A-G A.A432|A.A182,A.G215 Imino -A.A182 H-bonds[0]: "" +A.G215 H-bonds[1]: "N1-N2(amino)[3.19]" 17 type=I A|C-G A.A443|A.C1200,A.G1245 WC -A.C1200 H-bonds[2]: "O4'-O2'(hydroxyl)[2.95],O2'(hydroxyl)-O2(carbonyl)[2.86]" +A.G1245 H-bonds[1]: "N3-N2(amino)[2.88]" 18 type=II A|G-C A.A449|A.G35,A.C445 WC +A.G35 H-bonds[0]: "" -A.C445 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.12],N3-O2'(hydroxyl)[2.48]" 19 type=X A|G-C A.A479|A.G481,A.C509 WC +A.G481 H-bonds[1]: "O2'(hydroxyl)-O4'[3.04]" -A.C509 H-bonds[0]: "" 20 type=X A|C-G A.A483|A.C484,A.G496 WC +A.C484 H-bonds[1]: "OP2-N4(amino)[3.29]" -A.G496 H-bonds[0]: "" 21 type=X A|C-G A.A514|A.C581,A.G1259 WC -A.C581 H-bonds[1]: "N3-O2'(hydroxyl)[2.40]" +A.G1259 H-bonds[0]: "" 22 type=I A|U-A A.A515|A.U580,A.A1260 WC -A.U580 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.11],O2'(hydroxyl)-O2(carbonyl)[2.60]" +A.A1260 H-bonds[0]: "" 23 type=I A|C-G A.A526|A.C2043,A.G2625 WC -A.C2043 H-bonds[3]: "O3'-O2'(hydroxyl)[3.11],O2'(hydroxyl)-O2'(hydroxyl)[3.06],O2'(hydroxyl)-O2(carbonyl)[2.30]" +A.G2625 H-bonds[2]: "N1-O2'(hydroxyl)[3.10],N3-N2(amino)[3.08]" 24 type=I A|C-G A.A586|A.C671,A.G809 WC -A.C671 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.67]" +A.G809 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[2.87],N3-N2(amino)[3.26]" 25 type=X A|C-G A.A608|A.C237,A.G260 WC -A.C237 H-bonds[0]: "" +A.G260 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.15]" 26 type=I A|C-G A.A621|A.C238,A.G259 WC +A.C238 H-bonds[0]: "" -A.G259 H-bonds[4]: "O3'-O2'(hydroxyl)[2.89],O2'(hydroxyl)-O2'(hydroxyl)[2.74],O2'(hydroxyl)-N3[3.32],N3-N2(amino)[3.54]" 27 type=X A|G-C A.A685|A.G778,A.C786 WC +A.G778 H-bonds[2]: "N6(amino)-N3[3.10],N1-N2(amino)[2.98]" -A.C786 H-bonds[0]: "" 28 type=X A|C-G A.A735|A.C736,A.G760 WC +A.C736 H-bonds[1]: "OP2-N4(amino)[3.14]" -A.G760 H-bonds[0]: "" 29 type=I A|C-G A.A819|A.C837,A.G942 WC -A.C837 H-bonds[0]: "" +A.G942 H-bonds[1]: "N3-N2(amino)[3.07]" 30 type=I A|G-C A.A981|A.G2027,A.C2036 WC +A.G2027 H-bonds[1]: "N1-O2'(hydroxyl)[2.48]" -A.C2036 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.84],O2'(hydroxyl)-O2(carbonyl)[3.16]" 31 type=II A|G-C A.A1000|A.G976,A.C987 WC +A.G976 H-bonds[0]: "" -A.C987 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.09],N3-O2'(hydroxyl)[2.57]" 32 type=I A|G-C A.A1001|A.G977,A.C986 WC +A.G977 H-bonds[0]: "" -A.C986 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.53]" 33 type=II A|G-C A.A1009|A.G1002,A.C1153 WC +A.G1002 H-bonds[0]: "" -A.C1153 H-bonds[1]: "N3-O2'(hydroxyl)[2.85]" 34 type=I A|G-C A.A1010|A.G1003,A.C1152 WC +A.G1003 H-bonds[1]: "N3-N2(amino)[3.08]" -A.C1152 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.91],O2'(hydroxyl)-O2(carbonyl)[2.73]" 35 type=I A|C-G A.A1226|A.C812,A.G1195 WC -A.C812 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.13]" +A.G1195 H-bonds[2]: "N1-O2'(hydroxyl)[2.95],N3-N2(amino)[3.02]" 36 type=X A|C-G A.A1253|A.C564,A.G577 WC +A.C564 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.26],N1-O2'(hydroxyl)[2.99]" -A.G577 H-bonds[0]: "" 37 type=I A|C-G A.A1254|A.C672,A.G808 WC +A.C672 H-bonds[0]: "" -A.G808 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.59],N3-N2(amino)[3.38]" 38 type=X A|G-C A.A1274|A.G1296,A.C1644 WC -A.G1296 H-bonds[0]: "" +A.C1644 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.37],N1-O2'(hydroxyl)[2.56]" 39 type=I A|C-G A.A1275|A.C1295,A.G1645 WC +A.C1295 H-bonds[1]: "N1-O2'(hydroxyl)[3.29]" -A.G1645 H-bonds[1]: "O2'(hydroxyl)-N3[3.15]" 40 type=X A|C-G A.A1302|A.C1297,A.G1643 WC +A.C1297 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[2.98],N1-O2'(hydroxyl)[2.94]" -A.G1643 H-bonds[0]: "" 41 type=X A|C-G A.A1322|A.C1319,A.G1333 WC +A.C1319 H-bonds[0]: "" -A.G1333 H-bonds[2]: "N6(amino)-N3[3.44],N1-O2'(hydroxyl)[3.29]" 42 type=X A|A-U A.A1353|A.A693,A.U769 WC -A.A693 H-bonds[1]: "N3-O2'(hydroxyl)[2.68]" +A.U769 H-bonds[0]: "" 43 type=I A|C-G A.A1354|A.C692,A.G770 WC -A.C692 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[2.99]" +A.G770 H-bonds[2]: "N1-O2'(hydroxyl)[3.52],N3-N2(amino)[3.51]" 44 type=I A|G-C A.A1384|A.G1343,A.C1404 WC +A.G1343 H-bonds[1]: "N3-N2(amino)[2.91]" -A.C1404 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.12],O2'(hydroxyl)-O2(carbonyl)[2.39]" 45 type=X A|C-G A.A1392|A.C1315,A.G1337 WC -A.C1315 H-bonds[1]: "N3-O2'(hydroxyl)[2.52]" +A.G1337 H-bonds[0]: "" 46 type=I A|C-G A.A1393|A.C1314,A.G1338 WC -A.C1314 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.53]" +A.G1338 H-bonds[2]: "N1-O2'(hydroxyl)[2.88],N3-N2(amino)[3.22]" 47 type=II A|C-G A.A1469|A.C1386,A.G1401 WC -A.C1386 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.10],N3-O2'(hydroxyl)[2.44]" +A.G1401 H-bonds[0]: "" 48 type=X A|A-U A.A1470|A.A1385,A.U1402 WC -A.A1385 H-bonds[0]: "" +A.U1402 H-bonds[1]: "N1-O2'(hydroxyl)[3.54]" 49 type=X A|G-C A.A1477|A.G1435,A.C1557 WC -A.G1435 H-bonds[0]: "" +A.C1557 H-bonds[1]: "N1-O2'(hydroxyl)[2.79]" 50 type=II A|G-C A.A1496|A.G1421,A.C1577 WC +A.G1421 H-bonds[0]: "" -A.C1577 H-bonds[3]: "O2'(hydroxyl)-O3'[2.90],O2'(hydroxyl)-O2'(hydroxyl)[3.18],N3-O2'(hydroxyl)[2.54]" 51 type=I A|G-C A.A1515|A.G1436,A.C1556 WC +A.G1436 H-bonds[1]: "N3-N2(amino)[2.94]" -A.C1556 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.78],O2'(hydroxyl)-O2(carbonyl)[2.59]" 52 type=II A|C-G A.A1544|A.C1447,A.G1464 WC -A.C1447 H-bonds[1]: "N3-O2'(hydroxyl)[2.39]" +A.G1464 H-bonds[0]: "" 53 type=I A|C-G A.A1545|A.C1446,A.G1465 WC -A.C1446 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[3.12]" +A.G1465 H-bonds[2]: "N1-O2'(hydroxyl)[3.16],N3-N2(amino)[2.90]" 54 type=X A|C-G A.A1571|A.C1351,A.G1380 WC -A.C1351 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.23]" +A.G1380 H-bonds[0]: "" 55 type=X A|G-C A.A1610|A.G1310,A.C1604 WC -A.G1310 H-bonds[1]: "N3-N2(amino)[3.45]" +A.C1604 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[2.61],N1-O2'(hydroxyl)[3.10]" 56 type=X A|G-C A.A1616|A.G1324,A.C1330 WC +A.G1324 H-bonds[1]: "N6(amino)-N3[3.16]" -A.C1330 H-bonds[0]: "" 57 type=X A|G-C A.A1632|A.G700,A.C732 WC -A.G700 H-bonds[1]: "N3-O2'(hydroxyl)[3.41]" +A.C732 H-bonds[0]: "" 58 type=X A|G-C A.A1677|A.G1674,A.C1990 WC +A.G1674 H-bonds[1]: "N1-N2(amino)[2.89]" -A.C1990 H-bonds[0]: "" 59 type=X A|G-C A.A1754|A.G2693,A.C2716 WC +A.G2693 H-bonds[0]: "" -A.C2716 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[2.88],N6(amino)-O2(carbonyl)[3.39],N1-O2'(hydroxyl)[2.60]" 60 type=X A|G-C A.A1755|A.G2694,A.C2715 WC +A.G2694 H-bonds[2]: "N6(amino)-N3[2.88],N1-N2(amino)[2.82]" -A.C2715 H-bonds[0]: "" 61 type=II A|U-A A.A1802|A.U1798,A.A1821 WC -A.U1798 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.62]" +A.A1821 H-bonds[0]: "" 62 type=I A|G-C A.A1803|A.G1797,A.C1822 WC -A.G1797 H-bonds[0]: "" +A.C1822 H-bonds[1]: "N1-O2'(hydroxyl)[3.00]" 63 type=X A|C-G A.A1809|A.C1363,A.G1368 WC -A.C1363 H-bonds[1]: "N3-O2'(hydroxyl)[2.69]" +A.G1368 H-bonds[0]: "" 64 type=I A|C-G A.A1810|A.C1362,A.G1369 WC -A.C1362 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[3.41]" +A.G1369 H-bonds[2]: "N1-O2'(hydroxyl)[3.11],N3-N2(amino)[2.79]" 65 type=I A|C-G A.A1969|A.C1833,A.G1972 WC +A.C1833 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.11],N1-O2'(hydroxyl)[2.75]" -A.G1972 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.78]" 66 type=X A|G-U A.A1970|A.G1792,A.U1827 Wobble +A.G1792 H-bonds[0]: "" -A.U1827 H-bonds[1]: "N3-O2'(hydroxyl)[2.80]" 67 type=X A|U-A A.A2682|A.U2680,A.A2727 WC +A.U2680 H-bonds[1]: "N6(amino)-O2(carbonyl)[2.38]" -A.A2727 H-bonds[0]: "" 68 type=X A|C-G A.A2800|A.C8,A.G2895 WC +A.C8 H-bonds[0]: "" -A.G2895 H-bonds[1]: "N3-O2'(hydroxyl)[3.06]" 69 type=X A|G-C A.A2809|A.G2630,A.C2788 WC +A.G2630 H-bonds[0]: "" -A.C2788 H-bonds[1]: "N3-O2'(hydroxyl)[2.41]" 70 type=I A|G-C A.A2810|A.G2631,A.C2787 WC +A.G2631 H-bonds[0]: "" -A.C2787 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.62]" 71 type=X A|C-G A.A2823|A.C2047,A.G2621 WC -A.C2047 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.15],N1-O2'(hydroxyl)[2.96]" +A.G2621 H-bonds[1]: "N6(amino)*N2(amino)[3.34]" 72 type=I A|C-G A.A2860|A.C1708,A.G1750 WC -A.C1708 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.48]" +A.G1750 H-bonds[1]: "N3-N2(amino)[3.21]" 73 type=I A|G-C A.A2883|A.G2816,A.C2830 WC -A.G2816 H-bonds[2]: "O2'(hydroxyl)-N3[2.83],N3-N2(amino)[2.76]" +A.C2830 H-bonds[1]: "N1-O2'(hydroxyl)[3.04]" **************************************************************************** List of 18 ribose zippers 1 nts=4 CCAA A.C115,A.C116,A.A126,A.A127 2 nts=4 AACC A.A190,A.A191,A.C678,A.C679 3 nts=4 CCAA A.C237,A.C238,A.A608,A.A609 4 nts=4 AGAA A.A262,A.G263,A.A429,A.A430 5 nts=4 AACG A.A299,A.A300,A.C318,A.G319 6 nts=4 CUGA A.C812,A.U813,A.G1225,A.A1226 7 nts=4 AGAG A.A941,A.G942,A.A1189,A.G1190 8 nts=4 AACA A.A980,A.A981,A.C2036,A.A2037 9 nts=4 CCAA A.C986,A.C987,A.A1000,A.A1001 10 nts=4 AACC A.A1009,A.A1010,A.C1152,A.C1153 11 nts=4 CCAA A.C1314,A.C1315,A.A1392,A.A1393 12 nts=4 CCAA A.C1350,A.C1351,A.A1571,A.A1572 13 nts=4 AACU A.A1383,A.A1384,A.C1404,A.U1405 14 nts=4 CCAA A.C1446,A.C1447,A.A1544,A.A1545 15 nts=4 AACU A.A1495,A.A1496,A.C1577,A.U1578 16 nts=4 GACC A.G1514,A.A1515,A.C1556,A.C1557 17 nts=4 CUGA A.C1708,A.U1709,A.G2859,A.A2860 18 nts=4 CCAA A.C2787,A.C2788,A.A2809,A.A2810 **************************************************************************** List of 5 possible kink turns 1 Normal k-turn; iloop#61; between stems [#71,#72]; bending-angle=58 C#71[CG A.C1208,A.G1238] [GA A.G1212,A.A1237] NC#72[GU A.G1215,A.U1234] strand1 nts=11; GCCUGCGAAGG A.G1206,A.C1207,A.C1208,A.U1209,A.G1210,A.C1211,A.G1212,A.A1213,A.A1214,A.G1215,A.G1216 strand2 nts=8; CUGGAGGU A.C1233,A.U1234,A.G1235,A.G1236,A.A1237,A.G1238,A.G1239,A.U1240 2 REVERSE k-turn [A-G]; iloop#58; between stems [#21,#22]; bending-angle=90 C#21[CG A.C274,A.G363] [AG A.A279,A.G361] NC#22[CG A.C281,A.G359] strand1 nts=16; GAGCCUGAAUCAGUGU A.G271,A.A272,A.G273,A.C274,A.C275,A.U276,A.G277,A.A278,A.A279,A.U280,A.C281,A.A282,A.G283,A.U284,A.G285,A.U286 strand2 nts=13; AUGCUGUGAGCUC A.A354,A.U355,A.G356,A.C357,A.U358,A.G359,A.U360,A.G361,A.A362,A.G363,A.C364,A.U365,A.C366 3 Undecided case [A-G]; iloop#25; between stems [#-28,#83]; bending-angle=61 C#-28[AU A.A1353,A.U1379] [AG A.A1354,A.G1377] NC#83[GC A.G1355,A.C1376] strand1 nts=5; AAGGC A.A1353,A.A1354,A.G1355,A.G1356,A.C1357 strand2 nts=6; GUCGAU A.G1374,A.U1375,A.C1376,A.G1377,A.A1378,A.U1379 4 Undecided case [A-G]; iloop#41; between stems [#62,#63]; bending-angle=39 C#62[CG A.C998,A.G1157] [AG A.A1001,A.G1154] NC#63[GC A.G1002,A.C1153] strand1 nts=9; AGCUAAGGU A.A996,A.G997,A.C998,A.U999,A.A1000,A.A1001,A.G1002,A.G1003,A.U1004 strand2 nts=9; ACCGAAGCU A.A1151,A.C1152,A.C1153,A.G1154,A.A1155,A.A1156,A.G1157,A.C1158,A.U1159 5 Undecided case; iloop#69; between stems [#113,#112]; bending-angle=70 C#113[GC A.G1813,A.C1804] [GA A.G1814,A.A1803] NC#112[AU A.A1821,A.U1798] strand1 nts=12; GUGGACGUAUAC A.G1811,A.U1812,A.G1813,A.G1814,A.A1815,A.C1816,A.G1817,A.U1818,A.A1819,A.U1820,A.A1821,A.C1822 strand2 nts=10; GUGCAAACAC A.G1797,A.U1798,A.G1799,A.C1800,A.A1801,A.A1802,A.A1803,A.C1804,A.A1805,A.C1806 **************************************************************************** List of 309 splayed-apart dinucleotides 1 A.C11 A.U12 angle=91 distance=13.4 ratio=0.71 2 A.C33 A.U34 angle=102 distance=14.6 ratio=0.78 3 A.U34 A.G35 angle=115 distance=16.4 ratio=0.84 4 A.G45 A.G46 angle=118 distance=15.5 ratio=0.86 5 A.A49 A.U50 angle=117 distance=16.6 ratio=0.85 6 A.U50 A.G51 angle=131 distance=17.7 ratio=0.91 7 A.G51 A.A52 angle=88 distance=12.9 ratio=0.70 8 A.A71 A.U72 angle=110 distance=15.8 ratio=0.82 9 A.U72 A.A73 angle=121 distance=16.6 ratio=0.87 10 A.A74 A.G75 angle=97 distance=15.7 ratio=0.75 11 A.U87 A.G88 angle=154 distance=17.6 ratio=0.98 12 A.U99 A.U100 angle=95 distance=13.5 ratio=0.74 13 A.A101 A.U102 angle=133 distance=18.2 ratio=0.92 14 A.U102 A.A103 angle=161 distance=18.3 ratio=0.99 15 A.U113 A.U114 angle=104 distance=14.6 ratio=0.79 16 A.U120 A.G121 angle=154 distance=17.9 ratio=0.97 17 A.G124 A.A125 angle=115 distance=15.7 ratio=0.84 18 A.A125 A.A126 angle=143 distance=19.1 ratio=0.95 19 A.A127 A.C128 angle=88 distance=13.9 ratio=0.70 20 A.U137 A.U138 angle=117 distance=17.4 ratio=0.85 21 A.U138 A.U139 angle=127 distance=17.0 ratio=0.90 22 A.U139 A.C140 angle=100 distance=12.8 ratio=0.78 23 A.U148 A.A149 angle=131 distance=16.8 ratio=0.91 24 A.A195 A.A196 angle=130 distance=15.8 ratio=0.91 25 A.A196 A.A197 angle=97 distance=13.9 ratio=0.75 26 A.A199 A.U200 angle=87 distance=13.6 ratio=0.69 27 A.A222 A.A223 angle=134 distance=19.5 ratio=0.92 28 A.A223 A.U224 angle=140 distance=18.3 ratio=0.94 29 A.G232 A.A233 angle=140 distance=18.1 ratio=0.94 30 A.G247 A.G248 angle=88 distance=14.0 ratio=0.70 31 A.G248 A.C249 angle=127 distance=18.8 ratio=0.89 32 A.C264 A.A265 angle=117 distance=16.5 ratio=0.85 33 A.G277 A.A278 angle=100 distance=10.9 ratio=0.77 34 A.A300 A.G301 angle=87 distance=14.3 ratio=0.69 35 A.G307 A.G308 angle=88 distance=11.8 ratio=0.70 36 A.A311 A.G312 angle=97 distance=14.4 ratio=0.75 37 A.A320 A.U321 angle=146 distance=18.2 ratio=0.96 38 A.C323 A.A324 angle=105 distance=17.1 ratio=0.79 39 A.U328 A.G329 angle=145 distance=17.2 ratio=0.95 40 A.C331 A.A332 angle=103 distance=15.6 ratio=0.78 41 A.A332 A.G333 angle=90 distance=13.6 ratio=0.71 42 A.C334 A.C335 angle=112 distance=15.6 ratio=0.83 43 A.G370 A.A371 angle=114 distance=17.9 ratio=0.84 44 A.C383 A.A384 angle=102 distance=13.8 ratio=0.78 45 A.C385 A.G386 angle=124 distance=17.5 ratio=0.88 46 A.G386 A.U387 angle=171 distance=18.7 ratio=1.00 47 A.A404 A.U405 angle=94 distance=15.5 ratio=0.73 48 A.U405 A.G406 angle=110 distance=15.7 ratio=0.82 49 A.G410 A.G411 angle=150 distance=20.0 ratio=0.97 50 A.G411 A.A412 angle=146 distance=18.0 ratio=0.96 51 A.G442 A.A443 angle=172 distance=18.3 ratio=1.00 52 A.A443 A.C444 angle=139 distance=19.6 ratio=0.94 53 A.A447 A.U448 angle=167 distance=18.6 ratio=0.99 54 A.U448 A.A449 angle=111 distance=15.8 ratio=0.83 55 A.A453 A.A454 angle=125 distance=16.1 ratio=0.89 56 A.C455 A.C456 angle=144 distance=18.5 ratio=0.95 57 A.C456 A.A457 angle=167 distance=19.2 ratio=0.99 58 A.A472 A.G473 angle=112 distance=14.6 ratio=0.83 59 A.G474 A.C475 angle=150 distance=17.1 ratio=0.97 60 A.A482 A.A483 angle=110 distance=14.9 ratio=0.82 61 A.G489 A.C490 angle=122 distance=17.1 ratio=0.88 62 A.C490 A.G491 angle=132 distance=19.4 ratio=0.91 63 A.A503 A.A504 angle=138 distance=20.2 ratio=0.93 64 A.A504 A.A505 angle=171 distance=19.9 ratio=1.00 65 A.A507 A.A508 angle=138 distance=16.4 ratio=0.93 66 A.A508 A.C509 angle=107 distance=16.1 ratio=0.81 67 A.C509 A.C510 angle=130 distance=17.6 ratio=0.91 68 A.A526 A.C527 angle=140 distance=18.4 ratio=0.94 69 A.G530 A.C531 angle=106 distance=17.0 ratio=0.80 70 A.U546 A.A547 angle=111 distance=15.9 ratio=0.82 71 A.G549 A.C550 angle=107 distance=15.3 ratio=0.80 72 A.G561 A.U562 angle=120 distance=15.2 ratio=0.87 73 A.U562 A.A563 angle=111 distance=16.9 ratio=0.83 74 A.U571 A.A572 angle=92 distance=13.5 ratio=0.72 75 A.U573 A.A574 angle=85 distance=13.0 ratio=0.68 76 A.A574 A.A575 angle=148 distance=18.4 ratio=0.96 77 A.G578 A.G579 angle=130 distance=16.9 ratio=0.91 78 A.G612 A.A613 angle=100 distance=12.7 ratio=0.77 79 A.A613 A.A614 angle=97 distance=14.6 ratio=0.75 80 A.A614 A.U615 angle=120 distance=16.3 ratio=0.87 81 A.U615 A.A616 angle=124 distance=16.7 ratio=0.88 82 A.A626 A.A627 angle=100 distance=13.4 ratio=0.77 83 A.U642 A.A643 angle=87 distance=12.8 ratio=0.69 84 A.U646 A.G647 angle=103 distance=16.0 ratio=0.79 85 A.A654 A.A655 angle=176 distance=15.1 ratio=1.00 86 A.A670 A.C671 angle=124 distance=17.6 ratio=0.88 87 A.A685 A.U686 angle=121 distance=18.7 ratio=0.87 88 A.U686 A.C687 angle=97 distance=14.8 ratio=0.75 89 A.C698 A.A699 angle=139 distance=16.8 ratio=0.94 90 A.G728 A.G729 angle=151 distance=16.4 ratio=0.97 91 A.G729 A.A730 angle=135 distance=17.2 ratio=0.93 92 A.U746 A.U747 angle=140 distance=18.5 ratio=0.94 93 A.U747 A.G748 angle=124 distance=15.8 ratio=0.88 94 A.A750 A.A751 angle=127 distance=16.0 ratio=0.89 95 A.A751 A.A752 angle=89 distance=10.8 ratio=0.71 96 A.A761 A.U762 angle=127 distance=17.7 ratio=0.89 97 A.G763 A.A764 angle=128 distance=18.2 ratio=0.90 98 A.A764 A.C765 angle=164 distance=19.2 ratio=0.99 99 A.G775 A.G776 angle=96 distance=13.9 ratio=0.74 100 A.G780 A.A781 angle=156 distance=18.2 ratio=0.98 101 A.A781 A.A782 angle=129 distance=16.9 ratio=0.90 102 A.C787 A.A788 angle=122 distance=16.3 ratio=0.88 103 A.A788 A.A789 angle=118 distance=16.1 ratio=0.86 104 A.A789 A.U790 angle=105 distance=16.4 ratio=0.80 105 A.C791 A.A792 angle=136 distance=18.4 ratio=0.93 106 A.A792 A.A793 angle=91 distance=13.8 ratio=0.71 107 A.A793 A.A794 angle=100 distance=14.7 ratio=0.77 108 A.A800 A.G801 angle=128 distance=17.4 ratio=0.90 109 A.G801 A.A802 angle=165 distance=18.8 ratio=0.99 110 A.A804 A.G805 angle=128 distance=16.9 ratio=0.90 111 A.G805 A.C806 angle=111 distance=16.2 ratio=0.83 112 A.U810 A.U811 angle=93 distance=14.2 ratio=0.72 113 A.U811 A.C812 angle=88 distance=14.8 ratio=0.70 114 A.A821 A.G822 angle=109 distance=16.7 ratio=0.82 115 A.U826 A.U827 angle=135 distance=18.5 ratio=0.93 116 A.U827 A.U828 angle=102 distance=14.7 ratio=0.78 117 A.A829 A.G830 angle=171 distance=18.9 ratio=1.00 118 A.G830 A.G831 angle=115 distance=16.3 ratio=0.84 119 A.A845 A.U846 angle=105 distance=15.1 ratio=0.80 120 A.U846 A.U847 angle=86 distance=12.2 ratio=0.68 121 A.A909 A.A910 angle=96 distance=14.8 ratio=0.75 122 A.A911 A.C912 angle=117 distance=17.1 ratio=0.85 123 A.G930 A.U931 angle=125 distance=17.0 ratio=0.89 124 A.U931 A.U932 angle=157 distance=18.5 ratio=0.98 125 A.C944 A.A945 angle=147 distance=17.9 ratio=0.96 126 A.A945 A.C946 angle=106 distance=17.0 ratio=0.80 127 A.C957 A.U958 angle=129 distance=17.7 ratio=0.90 128 A.U958 A.A959 angle=143 distance=19.5 ratio=0.95 129 A.A960 A.C961 angle=100 distance=16.2 ratio=0.77 130 A.C961 A.G962 angle=174 distance=18.6 ratio=1.00 131 A.A979 A.A980 angle=105 distance=13.4 ratio=0.80 132 A.C982 A.A983 angle=99 distance=15.6 ratio=0.76 133 A.A984 A.C985 angle=92 distance=13.6 ratio=0.72 134 A.A990 A.C991 angle=141 distance=18.0 ratio=0.94 135 A.C994 A.C995 angle=152 distance=18.6 ratio=0.97 136 A.C995 A.A996 angle=151 distance=19.8 ratio=0.97 137 A.U1004 A.C1005 angle=152 distance=18.5 ratio=0.97 138 A.G1011 A.U1012 angle=112 distance=18.0 ratio=0.83 139 A.U1012 A.C1013 angle=113 distance=17.3 ratio=0.84 140 A.G1025 A.G1026 angle=145 distance=18.0 ratio=0.95 141 A.A1129 A.U1130 angle=111 distance=16.4 ratio=0.82 142 A.A1133 A.A1134 angle=160 distance=18.1 ratio=0.99 143 A.A1134 A.C1135 angle=133 distance=19.6 ratio=0.92 144 A.A1143 A.A1144 angle=117 distance=16.3 ratio=0.85 145 A.A1155 A.A1156 angle=108 distance=14.5 ratio=0.81 146 A.A1156 A.G1157 angle=125 distance=16.5 ratio=0.89 147 A.U1174 A.A1175 angle=116 distance=13.6 ratio=0.85 148 A.A1175 A.U1176 angle=110 distance=14.1 ratio=0.82 149 A.G1185 A.G1186 angle=170 distance=18.6 ratio=1.00 150 A.A1204 A.A1205 angle=168 distance=18.4 ratio=0.99 151 A.A1205 A.G1206 angle=119 distance=16.2 ratio=0.86 152 A.G1210 A.C1211 angle=128 distance=17.4 ratio=0.90 153 A.C1211 A.G1212 angle=111 distance=16.3 ratio=0.83 154 A.G1223 A.U1224 angle=86 distance=12.2 ratio=0.68 155 A.A1247 A.G1248 angle=106 distance=15.3 ratio=0.80 156 A.G1248 A.U1249 angle=126 distance=18.1 ratio=0.89 157 A.G1250 A.C1251 angle=107 distance=16.0 ratio=0.81 158 A.C1251 A.G1252 angle=110 distance=15.4 ratio=0.82 159 A.A1253 A.A1254 angle=111 distance=16.0 ratio=0.83 160 A.A1254 A.U1255 angle=139 distance=16.5 ratio=0.94 161 A.U1255 A.G1256 angle=144 distance=18.8 ratio=0.95 162 A.C1270 A.G1271 angle=103 distance=14.8 ratio=0.78 163 A.G1271 A.A1272 angle=113 distance=17.0 ratio=0.84 164 A.U1273 A.A1274 angle=173 distance=18.3 ratio=1.00 165 A.A1274 A.A1275 angle=90 distance=13.2 ratio=0.71 166 A.A1286 A.A1287 angle=93 distance=13.9 ratio=0.73 167 A.G1299 A.G1300 angle=149 distance=19.6 ratio=0.97 168 A.A1301 A.A1302 angle=103 distance=14.8 ratio=0.78 169 A.A1302 A.G1303 angle=119 distance=16.8 ratio=0.86 170 A.G1324 A.U1325 angle=129 distance=19.1 ratio=0.90 171 A.U1325 A.U1326 angle=105 distance=15.4 ratio=0.79 172 A.A1328 A.U1329 angle=106 distance=14.8 ratio=0.80 173 A.U1329 A.C1330 angle=95 distance=14.3 ratio=0.74 174 A.G1331 A.G1332 angle=94 distance=12.3 ratio=0.73 175 A.G1332 A.G1333 angle=103 distance=14.9 ratio=0.78 176 A.U1340 A.G1341 angle=95 distance=14.4 ratio=0.73 177 A.G1341 A.A1342 angle=97 distance=14.3 ratio=0.75 178 A.A1342 A.G1343 angle=103 distance=15.2 ratio=0.78 179 A.U1344 A.C1345 angle=118 distance=16.9 ratio=0.86 180 A.G1358 A.A1359 angle=94 distance=12.8 ratio=0.73 181 A.A1384 A.A1385 angle=86 distance=14.4 ratio=0.68 182 A.A1395 A.U1396 angle=138 distance=18.4 ratio=0.93 183 A.U1396 A.U1397 angle=91 distance=14.2 ratio=0.71 184 A.U1397 A.C1398 angle=89 distance=13.6 ratio=0.70 185 A.U1415 A.G1416 angle=88 distance=13.0 ratio=0.70 186 A.A1419 A.A1420 angle=88 distance=13.0 ratio=0.70 187 A.A1420 A.G1421 angle=114 distance=16.6 ratio=0.84 188 A.C1428 A.G1429 angle=142 distance=17.9 ratio=0.95 189 A.G1452 A.A1453 angle=115 distance=15.5 ratio=0.84 190 A.A1453 A.C1454 angle=94 distance=14.4 ratio=0.73 191 A.U1457 A.U1458 angle=96 distance=13.7 ratio=0.75 192 A.G1459 A.U1460 angle=128 distance=17.7 ratio=0.90 193 A.U1460 A.C1461 angle=150 distance=18.7 ratio=0.97 194 A.U1466 A.U1467 angle=119 distance=16.9 ratio=0.86 195 A.U1468 A.A1469 angle=86 distance=12.0 ratio=0.68 196 A.C1489 A.A1490 angle=85 distance=11.7 ratio=0.68 197 A.A1490 A.G1491 angle=90 distance=13.7 ratio=0.71 198 A.G1492 A.C1493 angle=161 distance=18.4 ratio=0.99 199 A.A1496 A.U1497 angle=97 distance=14.5 ratio=0.75 200 A.U1497 A.C1498 angle=89 distance=13.8 ratio=0.70 201 A.A1522 A.U1523 angle=166 distance=20.6 ratio=0.99 202 A.U1523 A.G1524 angle=153 distance=18.4 ratio=0.97 203 A.U1534 A.A1535 angle=97 distance=12.1 ratio=0.76 204 A.G1546 A.C1547 angle=107 distance=15.8 ratio=0.80 205 A.U1554 A.G1555 angle=100 distance=15.1 ratio=0.77 206 A.C1558 A.U1559 angle=158 distance=19.2 ratio=0.98 207 A.U1559 A.G1560 angle=133 distance=17.0 ratio=0.92 208 A.A1566 A.G1567 angle=89 distance=13.7 ratio=0.70 209 A.G1568 A.A1569 angle=154 distance=20.6 ratio=0.97 210 A.A1583 A.U1584 angle=137 distance=16.1 ratio=0.93 211 A.U1584 A.C1585 angle=102 distance=13.7 ratio=0.78 212 A.A1597 A.A1598 angle=113 distance=14.8 ratio=0.83 213 A.U1602 A.A1603 angle=134 distance=17.5 ratio=0.92 214 A.C1606 A.C1607 angle=151 distance=18.3 ratio=0.97 215 A.C1607 A.A1608 angle=111 distance=15.5 ratio=0.83 216 A.A1608 A.A1609 angle=108 distance=16.5 ratio=0.81 217 A.A1610 A.C1611 angle=105 distance=15.5 ratio=0.79 218 A.G1613 A.A1614 angle=100 distance=13.2 ratio=0.77 219 A.C1615 A.A1616 angle=103 distance=15.3 ratio=0.78 220 A.A1616 A.C1617 angle=146 distance=18.2 ratio=0.96 221 A.C1617 A.A1618 angle=111 distance=15.8 ratio=0.82 222 A.A1618 A.G1619 angle=127 distance=16.8 ratio=0.90 223 A.A1626 A.G1627 angle=93 distance=14.0 ratio=0.73 224 A.G1631 A.A1632 angle=87 distance=12.0 ratio=0.69 225 A.G1633 A.A1634 angle=107 distance=15.6 ratio=0.80 226 A.A1634 A.A1635 angle=120 distance=16.8 ratio=0.87 227 A.G1645 A.C1646 angle=100 distance=14.7 ratio=0.77 228 A.C1646 A.U1647 angle=155 distance=19.6 ratio=0.98 229 A.U1647 A.U1648 angle=100 distance=16.1 ratio=0.77 230 A.G1673 A.G1674 angle=112 distance=16.1 ratio=0.83 231 A.G1681 A.G1682 angle=99 distance=14.9 ratio=0.76 232 A.U1692 A.U1693 angle=100 distance=13.9 ratio=0.76 233 A.U1693 A.C1694 angle=90 distance=13.8 ratio=0.71 234 A.A1698 A.G1699 angle=106 distance=15.7 ratio=0.80 235 A.G1699 A.A1700 angle=102 distance=16.2 ratio=0.78 236 A.C1706 A.G1707 angle=127 distance=16.9 ratio=0.90 237 A.A1713 A.U1714 angle=135 distance=18.3 ratio=0.92 238 A.U1714 A.G1715 angle=132 distance=16.5 ratio=0.91 239 A.G1731 A.C1732 angle=136 distance=18.2 ratio=0.93 240 A.C1732 A.G1733 angle=158 distance=18.4 ratio=0.98 241 A.A1755 A.G1756 angle=99 distance=12.5 ratio=0.77 242 A.G1756 A.A1757 angle=158 distance=18.8 ratio=0.98 243 A.A1757 A.U1758 angle=107 distance=16.3 ratio=0.81 244 A.U1758 A.A1759 angle=110 distance=15.5 ratio=0.82 245 A.U1779 A.A1780 angle=145 distance=19.7 ratio=0.95 246 A.U1781 A.U1782 angle=111 distance=15.9 ratio=0.83 247 A.A1783 A.A1784 angle=96 distance=14.2 ratio=0.75 248 A.A1785 A.A1786 angle=93 distance=12.8 ratio=0.72 249 A.A1786 A.A1787 angle=103 distance=15.2 ratio=0.79 250 A.C1800 A.A1801 angle=137 distance=18.0 ratio=0.93 251 A.A1801 A.A1802 angle=164 distance=18.7 ratio=0.99 252 A.G1807 A.A1808 angle=116 distance=15.6 ratio=0.85 253 A.C1816 A.G1817 angle=118 distance=15.5 ratio=0.86 254 A.A1819 A.U1820 angle=164 distance=18.3 ratio=0.99 255 A.U1820 A.A1821 angle=108 distance=15.8 ratio=0.81 256 A.G1828 A.A1829 angle=149 distance=18.2 ratio=0.96 257 A.U1834 A.G1835 angle=105 distance=14.7 ratio=0.79 258 A.A1970 A.U1971 angle=135 distance=19.3 ratio=0.92 259 A.U1971 A.G1972 angle=128 distance=18.6 ratio=0.90 260 A.G1980 A.A1981 angle=146 distance=16.4 ratio=0.96 261 A.A1981 A.U1982 angle=135 distance=17.1 ratio=0.92 262 A.U1991 A.G1992 angle=121 distance=15.2 ratio=0.87 263 A.U2017 A.G2018 angle=128 distance=16.9 ratio=0.90 264 A.A2020 A.C2021 angle=108 distance=16.2 ratio=0.81 265 A.C2021 A.U2022 angle=130 distance=19.2 ratio=0.91 266 A.U2022 A.C2023 angle=162 distance=18.7 ratio=0.99 267 A.G2029 A.A2030 angle=111 distance=16.4 ratio=0.83 268 A.A2031 A.G2032 angle=133 distance=16.8 ratio=0.92 269 A.G2032 A.A2033 angle=160 distance=18.6 ratio=0.98 270 A.A2033 A.U2034 angle=93 distance=14.0 ratio=0.73 271 A.G2035 A.C2036 angle=102 distance=15.3 ratio=0.78 272 A.A2042 A.C2043 angle=113 distance=16.2 ratio=0.84 273 A.A2054 A.C2055 angle=159 distance=18.6 ratio=0.98 274 A.C2055 A.G2056 angle=115 distance=17.1 ratio=0.85 275 A.U2613 A.A2614 angle=91 distance=12.8 ratio=0.71 276 A.C2628 A.U2629 angle=110 distance=15.6 ratio=0.82 277 A.U2629 A.G2630 angle=145 distance=18.7 ratio=0.95 278 A.G2645 A.C2646 angle=119 distance=16.9 ratio=0.86 279 A.G2688 A.U2689 angle=132 distance=17.9 ratio=0.92 280 A.U2689 A.U2690 angle=108 distance=16.5 ratio=0.81 281 A.U2690 A.C2691 angle=109 distance=16.1 ratio=0.81 282 A.U2701 A.G2702 angle=85 distance=11.7 ratio=0.68 283 A.A2711 A.C2712 angle=111 distance=14.5 ratio=0.83 284 A.G2732 A.A2733 angle=106 distance=16.7 ratio=0.80 285 A.A2750 A.G2751 angle=145 distance=15.5 ratio=0.96 286 A.U2754 A.C2755 angle=114 distance=16.1 ratio=0.84 287 A.C2755 A.U2756 angle=115 distance=15.3 ratio=0.84 288 A.A2776 A.G2777 angle=168 distance=17.5 ratio=0.99 289 A.G2777 A.A2778 angle=122 distance=17.7 ratio=0.88 290 A.A2778 A.U2779 angle=129 distance=18.1 ratio=0.90 291 A.U2779 A.G2780 angle=152 distance=18.4 ratio=0.97 292 A.G2780 A.A2781 angle=120 distance=16.6 ratio=0.87 293 A.A2781 A.G2782 angle=128 distance=15.2 ratio=0.90 294 A.U2790 A.G2791 angle=126 distance=17.8 ratio=0.89 295 A.U2797 A.U2798 angle=94 distance=14.0 ratio=0.73 296 A.A2799 A.A2800 angle=149 distance=19.2 ratio=0.96 297 A.A2800 A.G2801 angle=157 distance=20.6 ratio=0.98 298 A.G2819 A.A2820 angle=102 distance=14.5 ratio=0.78 299 A.A2820 A.A2821 angle=95 distance=13.9 ratio=0.73 300 A.G2822 A.A2823 angle=121 distance=14.9 ratio=0.87 301 A.G2831 A.U2832 angle=94 distance=13.5 ratio=0.73 302 A.U2832 A.U2833 angle=139 distance=17.7 ratio=0.94 303 A.U2833 A.G2834 angle=109 distance=15.2 ratio=0.82 304 A.U2849 A.A2850 angle=95 distance=14.1 ratio=0.74 305 A.G2857 A.C2858 angle=86 distance=12.0 ratio=0.69 306 A.A2873 A.C2874 angle=112 distance=16.5 ratio=0.83 307 A.A2883 A.U2884 angle=135 distance=17.2 ratio=0.92 308 A.G2892 A.A2893 angle=109 distance=15.4 ratio=0.82 309 A.G2894 A.G2895 angle=127 distance=16.8 ratio=0.90 ---------------------------------------------------------------- Summary of 195 splayed-apart units 1 nts=2 CU A.C11,A.U12 2 nts=3 CUG A.C33,A.U34,A.G35 3 nts=2 GG A.G45,A.G46 4 nts=4 AUGA A.A49,A.U50,A.G51,A.A52 5 nts=3 AUA A.A71,A.U72,A.A73 6 nts=2 AG A.A74,A.G75 7 nts=2 UG A.U87,A.G88 8 nts=2 UU A.U99,A.U100 9 nts=3 AUA A.A101,A.U102,A.A103 10 nts=2 UU A.U113,A.U114 11 nts=2 UG A.U120,A.G121 12 nts=3 GAA A.G124,A.A125,A.A126 13 nts=2 AC A.A127,A.C128 14 nts=4 UUUC A.U137,A.U138,A.U139,A.C140 15 nts=2 UA A.U148,A.A149 16 nts=3 AAA A.A195,A.A196,A.A197 17 nts=2 AU A.A199,A.U200 18 nts=3 AAU A.A222,A.A223,A.U224 19 nts=2 GA A.G232,A.A233 20 nts=3 GGC A.G247,A.G248,A.C249 21 nts=2 CA A.C264,A.A265 22 nts=2 GA A.G277,A.A278 23 nts=2 AG A.A300,A.G301 24 nts=2 GG A.G307,A.G308 25 nts=2 AG A.A311,A.G312 26 nts=2 AU A.A320,A.U321 27 nts=2 CA A.C323,A.A324 28 nts=2 UG A.U328,A.G329 29 nts=3 CAG A.C331,A.A332,A.G333 30 nts=2 CC A.C334,A.C335 31 nts=2 GA A.G370,A.A371 32 nts=2 CA A.C383,A.A384 33 nts=3 CGU A.C385,A.G386,A.U387 34 nts=3 AUG A.A404,A.U405,A.G406 35 nts=3 GGA A.G410,A.G411,A.A412 36 nts=3 GAC A.G442,A.A443,A.C444 37 nts=3 AUA A.A447,A.U448,A.A449 38 nts=2 AA A.A453,A.A454 39 nts=3 CCA A.C455,A.C456,A.A457 40 nts=2 AG A.A472,A.G473 41 nts=2 GC A.G474,A.C475 42 nts=2 AA A.A482,A.A483 43 nts=3 GCG A.G489,A.C490,A.G491 44 nts=3 AAA A.A503,A.A504,A.A505 45 nts=4 AACC A.A507,A.A508,A.C509,A.C510 46 nts=2 AC A.A526,A.C527 47 nts=2 GC A.G530,A.C531 48 nts=2 UA A.U546,A.A547 49 nts=2 GC A.G549,A.C550 50 nts=3 GUA A.G561,A.U562,A.A563 51 nts=2 UA A.U571,A.A572 52 nts=3 UAA A.U573,A.A574,A.A575 53 nts=2 GG A.G578,A.G579 54 nts=5 GAAUA A.G612,A.A613,A.A614,A.U615,A.A616 55 nts=2 AA A.A626,A.A627 56 nts=2 UA A.U642,A.A643 57 nts=2 UG A.U646,A.G647 58 nts=2 AA A.A654,A.A655 59 nts=2 AC A.A670,A.C671 60 nts=3 AUC A.A685,A.U686,A.C687 61 nts=2 CA A.C698,A.A699 62 nts=3 GGA A.G728,A.G729,A.A730 63 nts=3 UUG A.U746,A.U747,A.G748 64 nts=3 AAA A.A750,A.A751,A.A752 65 nts=2 AU A.A761,A.U762 66 nts=3 GAC A.G763,A.A764,A.C765 67 nts=2 GG A.G775,A.G776 68 nts=3 GAA A.G780,A.A781,A.A782 69 nts=4 CAAU A.C787,A.A788,A.A789,A.U790 70 nts=4 CAAA A.C791,A.A792,A.A793,A.A794 71 nts=3 AGA A.A800,A.G801,A.A802 72 nts=3 AGC A.A804,A.G805,A.C806 73 nts=3 UUC A.U810,A.U811,A.C812 74 nts=2 AG A.A821,A.G822 75 nts=3 UUU A.U826,A.U827,A.U828 76 nts=3 AGG A.A829,A.G830,A.G831 77 nts=3 AUU A.A845,A.U846,A.U847 78 nts=2 AA A.A909,A.A910 79 nts=2 AC A.A911,A.C912 80 nts=3 GUU A.G930,A.U931,A.U932 81 nts=3 CAC A.C944,A.A945,A.C946 82 nts=3 CUA A.C957,A.U958,A.A959 83 nts=3 ACG A.A960,A.C961,A.G962 84 nts=2 AA A.A979,A.A980 85 nts=2 CA A.C982,A.A983 86 nts=2 AC A.A984,A.C985 87 nts=2 AC A.A990,A.C991 88 nts=3 CCA A.C994,A.C995,A.A996 89 nts=2 UC A.U1004,A.C1005 90 nts=3 GUC A.G1011,A.U1012,A.C1013 91 nts=2 GG A.G1025,A.G1026 92 nts=2 AU A.A1129,A.U1130 93 nts=3 AAC A.A1133,A.A1134,A.C1135 94 nts=2 AA A.A1143,A.A1144 95 nts=3 AAG A.A1155,A.A1156,A.G1157 96 nts=3 UAU A.U1174,A.A1175,A.U1176 97 nts=2 GG A.G1185,A.G1186 98 nts=3 AAG A.A1204,A.A1205,A.G1206 99 nts=3 GCG A.G1210,A.C1211,A.G1212 100 nts=2 GU A.G1223,A.U1224 101 nts=3 AGU A.A1247,A.G1248,A.U1249 102 nts=3 GCG A.G1250,A.C1251,A.G1252 103 nts=4 AAUG A.A1253,A.A1254,A.U1255,A.G1256 104 nts=3 CGA A.C1270,A.G1271,A.A1272 105 nts=3 UAA A.U1273,A.A1274,A.A1275 106 nts=2 AA A.A1286,A.A1287 107 nts=2 GG A.G1299,A.G1300 108 nts=3 AAG A.A1301,A.A1302,A.G1303 109 nts=3 GUU A.G1324,A.U1325,A.U1326 110 nts=3 AUC A.A1328,A.U1329,A.C1330 111 nts=3 GGG A.G1331,A.G1332,A.G1333 112 nts=4 UGAG A.U1340,A.G1341,A.A1342,A.G1343 113 nts=2 UC A.U1344,A.C1345 114 nts=2 GA A.G1358,A.A1359 115 nts=2 AA A.A1384,A.A1385 116 nts=4 AUUC A.A1395,A.U1396,A.U1397,A.C1398 117 nts=2 UG A.U1415,A.G1416 118 nts=3 AAG A.A1419,A.A1420,A.G1421 119 nts=2 CG A.C1428,A.G1429 120 nts=3 GAC A.G1452,A.A1453,A.C1454 121 nts=2 UU A.U1457,A.U1458 122 nts=3 GUC A.G1459,A.U1460,A.C1461 123 nts=2 UU A.U1466,A.U1467 124 nts=2 UA A.U1468,A.A1469 125 nts=3 CAG A.C1489,A.A1490,A.G1491 126 nts=2 GC A.G1492,A.C1493 127 nts=3 AUC A.A1496,A.U1497,A.C1498 128 nts=3 AUG A.A1522,A.U1523,A.G1524 129 nts=2 UA A.U1534,A.A1535 130 nts=2 GC A.G1546,A.C1547 131 nts=2 UG A.U1554,A.G1555 132 nts=3 CUG A.C1558,A.U1559,A.G1560 133 nts=2 AG A.A1566,A.G1567 134 nts=2 GA A.G1568,A.A1569 135 nts=3 AUC A.A1583,A.U1584,A.C1585 136 nts=2 AA A.A1597,A.A1598 137 nts=2 UA A.U1602,A.A1603 138 nts=4 CCAA A.C1606,A.C1607,A.A1608,A.A1609 139 nts=2 AC A.A1610,A.C1611 140 nts=2 GA A.G1613,A.A1614 141 nts=5 CACAG A.C1615,A.A1616,A.C1617,A.A1618,A.G1619 142 nts=2 AG A.A1626,A.G1627 143 nts=2 GA A.G1631,A.A1632 144 nts=3 GAA A.G1633,A.A1634,A.A1635 145 nts=4 GCUU A.G1645,A.C1646,A.U1647,A.U1648 146 nts=2 GG A.G1673,A.G1674 147 nts=2 GG A.G1681,A.G1682 148 nts=3 UUC A.U1692,A.U1693,A.C1694 149 nts=3 AGA A.A1698,A.G1699,A.A1700 150 nts=2 CG A.C1706,A.G1707 151 nts=3 AUG A.A1713,A.U1714,A.G1715 152 nts=3 GCG A.G1731,A.C1732,A.G1733 153 nts=5 AGAUA A.A1755,A.G1756,A.A1757,A.U1758,A.A1759 154 nts=2 UA A.U1779,A.A1780 155 nts=2 UU A.U1781,A.U1782 156 nts=2 AA A.A1783,A.A1784 157 nts=3 AAA A.A1785,A.A1786,A.A1787 158 nts=3 CAA A.C1800,A.A1801,A.A1802 159 nts=2 GA A.G1807,A.A1808 160 nts=2 CG A.C1816,A.G1817 161 nts=3 AUA A.A1819,A.U1820,A.A1821 162 nts=2 GA A.G1828,A.A1829 163 nts=2 UG A.U1834,A.G1835 164 nts=3 AUG A.A1970,A.U1971,A.G1972 165 nts=3 GAU A.G1980,A.A1981,A.U1982 166 nts=2 UG A.U1991,A.G1992 167 nts=2 UG A.U2017,A.G2018 168 nts=4 ACUC A.A2020,A.C2021,A.U2022,A.C2023 169 nts=2 GA A.G2029,A.A2030 170 nts=4 AGAU A.A2031,A.G2032,A.A2033,A.U2034 171 nts=2 GC A.G2035,A.C2036 172 nts=2 AC A.A2042,A.C2043 173 nts=3 ACG A.A2054,A.C2055,A.G2056 174 nts=2 UA A.U2613,A.A2614 175 nts=3 CUG A.C2628,A.U2629,A.G2630 176 nts=2 GC A.G2645,A.C2646 177 nts=4 GUUC A.G2688,A.U2689,A.U2690,A.C2691 178 nts=2 UG A.U2701,A.G2702 179 nts=2 AC A.A2711,A.C2712 180 nts=2 GA A.G2732,A.A2733 181 nts=2 AG A.A2750,A.G2751 182 nts=3 UCU A.U2754,A.C2755,A.U2756 183 nts=7 AGAUGAG A.A2776,A.G2777,A.A2778,A.U2779,A.G2780,A.A2781,A.G2782 184 nts=2 UG A.U2790,A.G2791 185 nts=2 UU A.U2797,A.U2798 186 nts=3 AAG A.A2799,A.A2800,A.G2801 187 nts=3 GAA A.G2819,A.A2820,A.A2821 188 nts=2 GA A.G2822,A.A2823 189 nts=4 GUUG A.G2831,A.U2832,A.U2833,A.G2834 190 nts=2 UA A.U2849,A.A2850 191 nts=2 GC A.G2857,A.C2858 192 nts=2 AC A.A2873,A.C2874 193 nts=2 AU A.A2883,A.U2884 194 nts=2 GA A.G2892,A.A2893 195 nts=2 GG A.G2894,A.G2895 **************************************************************************** This structure contains *2-order pseudoknot o You may want to run DSSR again with the '--nested' option which removes pseudoknots to get a fully nested secondary structure representation. **************************************************************************** List of 6 H-type pseudoknot loop segments 1 stem#8(hairpin#1) vs stem#9(hairpin#2) L1 groove=MAJOR nts=5 UGCUA A.U59,A.G60,A.C61,A.U62,A.A63 2 stem#8(hairpin#1) vs stem#9(hairpin#2) L2 groove=----- nts=2 UG A.U67,A.G68 3 stem#8(hairpin#1) vs stem#9(hairpin#2) L3 groove=minor nts=17 AUAAGCGUCGGUAAGGU A.A71,A.U72,A.A73,A.A74,A.G75,A.C76,A.G77,A.U78,A.C79,A.G80,A.G81,A.U82,A.A83,A.A84,A.G85,A.G86,A.U87 4 stem#27(hairpin#11) vs stem#28(hairpin#12) L1 groove=MAJOR nts=6 GAUACA A.G319,A.A320,A.U321,A.A322,A.C323,A.A324 5 stem#27(hairpin#11) vs stem#28(hairpin#12) L2 groove=----- nts=5 UGACA A.U328,A.G329,A.A330,A.C331,A.A332 6 stem#27(hairpin#11) vs stem#28(hairpin#12) L3 groove=----- nts=0 **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >6gc6 nts=2092 [whole] GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCAC&CAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAA&GAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACG&CGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUG&GAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCC&GCGGCAAGACGGAAA&UCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCU ((((((((......((((((((.(.....(....((((((((.((((......(((((..[..[[[..)).....((.((((..(((]]]..].)))......)))).))...)))....(((....)))(((((((....))))))).(((((((((.........))))))))).))....(((((.....(...[..)......)))))...........((....))...(((((.....((.]...))....)))))...((((.((((......((((((.((.((..(((...(((.(......).)))[[......(((.....]])))...)))....)).)).))))))...))))...)....((.(.(((.........))).).))......((.((......)).))..)))......))..)))))).))...............((....))............(..((((.....))))............)).....).)))))))).....(.(.((..(((((......)))))..)).).{.(.(........).).((((((....(((((((((((((..((....((.....))....))...((....))..((((.....)))).....)))))))))))))..((.(...((((((.....((((((.(((.(((....((((((......)))))).....)))...((..(((((........))))).))..).)).)))))).(.((.......))...)..))))))......).))..((((((....(((((....))))).((((((((..((((((((((.....(((...&....)).).....)))))).)))..)))))))).)...((((.(((.(......).))).))))..&..(((......)))...((((.(((...((([[[...(.((((((.....(.....((&))...........]]].)...))))))))))...)))))))(((((..((....))..)))))....))))))(((((((...(((......((.(((((....))))).))...)))..))))).)).....))))))(......((.....((((((.......))))))((((....((.(..((..(((((((....(.....)..))))))....[[(((.(((.(.(((...(((....)))...)))..))))..(((((........)))))]](((.(((((((.(...((((....((((..(((..((((((((((((...[[[.).))))))(...((((....((((.((((((.((.....)))))))).)..)))...[))))....)(..(((((....)))))...))))))...)))...))))(..).....))))...).....))))))).))).))).))).....((......)).).)).((.........))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))((((((.....(((...(((.(...]))))...)))...))))))(...).......(((((((((...((.........))...((((.((.....(((....))).......)).)))).}((((..&....))))...)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((&(((((.((..((...&..))...)))))))))){...(((((((...((((..(..((((.....(....)....))))..).(((((...(.((...(((((((((((]]].))))))..)))))...)).).)))))....((....(.((.............)).)....))..))))..}....)))))))(.((((((..).)))))(....((..(((((.......)))))....((((((((..((....(((((....)))))...))...))))).))).....))..).))))))))). >6gc6-A #1 nts=2092 0.00(3.52) [chain] RNA* GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCAC&CAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAA&GAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACG&CGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUG&GAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCC&GCGGCAAGACGGAAA&UCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCU ((((((((......((((((((.(.....(....((((((((.((((......(((((..[..[[[..)).....((.((((..(((]]]..].)))......)))).))...)))....(((....)))(((((((....))))))).(((((((((.........))))))))).))....(((((.....(...[..)......)))))...........((....))...(((((.....((.]...))....)))))...((((.((((......((((((.((.((..(((...(((.(......).)))[[......(((.....]])))...)))....)).)).))))))...))))...)....((.(.(((.........))).).))......((.((......)).))..)))......))..)))))).))...............((....))............(..((((.....))))............)).....).)))))))).....(.(.((..(((((......)))))..)).).{.(.(........).).((((((....(((((((((((((..((....((.....))....))...((....))..((((.....)))).....)))))))))))))..((.(...((((((.....((((((.(((.(((....((((((......)))))).....)))...((..(((((........))))).))..).)).)))))).(.((.......))...)..))))))......).))..((((((....(((((....))))).((((((((..((((((((((.....(((...&....)).).....)))))).)))..)))))))).)...((((.(((.(......).))).))))..&..(((......)))...((((.(((...((([[[...(.((((((.....(.....((&))...........]]].)...))))))))))...)))))))(((((..((....))..)))))....))))))(((((((...(((......((.(((((....))))).))...)))..))))).)).....))))))(......((.....((((((.......))))))((((....((.(..((..(((((((....(.....)..))))))....[[(((.(((.(.(((...(((....)))...)))..))))..(((((........)))))]](((.(((((((.(...((((....((((..(((..((((((((((((...[[[.).))))))(...((((....((((.((((((.((.....)))))))).)..)))...[))))....)(..(((((....)))))...))))))...)))...))))(..).....))))...).....))))))).))).))).))).....((......)).).)).((.........))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))((((((.....(((...(((.(...]))))...)))...))))))(...).......(((((((((...((.........))...((((.((.....(((....))).......)).)))).}((((..&....))))...)).))))))).)..))).)))))))).)))))).....)).[..(((((.....}].)))))..(((&(((((.((..((...&..))...)))))))))){...(((((((...((((..(..((((.....(....)....))))..).(((((...(.((...(((((((((((]]].))))))..)))))...)).).)))))....((....(.((.............)).)....))..))))..}....)))))))(.((((((..).)))))(....((..(((((.......)))))....((((((((..((....(((((....)))))...))...))))).))).....))..).))))))))). **************************************************************************** Summary of structural features of 2092 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 G ( A.G1 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 2 G ( A.G2 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 3 U ( A.U3 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 4 U ( A.U4 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 5 A ( A.A5 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 6 A ( A.A6 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 7 G ( A.G7 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 8 C ( A.C8 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,A-minor,phosphate 9 G . A.G9 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop 10 A . A.A10 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 11 C . A.C11 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 12 U . A.U12 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,splayed-apart 13 A . A.A13 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,ss-non-loop 14 A . A.A14 0.005 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 15 G ( A.G15 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 16 C ( A.C16 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 17 G ( A.G17 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 18 U ( A.U18 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 19 A ( A.A19 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 20 C ( A.C20 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 21 A ( A.A21 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 22 C ( A.C22 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 23 G . A.G23 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 24 G ( A.G24 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 25 U . A.U25 0.012 anti,~C3'-endo,BI,non-pair-contact,internal-loop 26 G . A.G26 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 27 G . A.G27 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 28 A . A.A28 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 29 U . A.U29 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 30 G ( A.G30 0.013 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 31 C . A.C31 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 32 C . A.C32 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 33 C . A.C33 0.002 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 34 U . A.U34 0.001 turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart 35 G ( A.G35 0.003 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,splayed-apart 36 G ( A.G36 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 37 C ( A.C37 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 38 A ( A.A38 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 39 G ( A.G39 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 40 U ( A.U40 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 41 C ( A.C41 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 42 A ( A.A42 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 43 G . A.G43 0.003 anti,~C3'-endo,BI,non-pair-contact,internal-loop 44 A ( A.A44 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 45 G ( A.G45 0.006 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 46 G ( A.G46 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 47 C ( A.C47 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 48 G . A.G48 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop 49 A . A.A49 0.009 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate,splayed-apart 50 U . A.U50 0.001 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 51 G . A.G51 0.004 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 52 A . A.A52 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 53 A . A.A53 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 54 G ( A.G54 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 55 G ( A.G55 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 56 A ( A.A56 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 57 C ( A.C57 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate 58 G ( A.G58 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,kissing-loop,phosphate 59 U . A.U59 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 60 G . A.G60 0.004 anti,~C2'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,kissing-loop 61 C [ A.C61 0.004 pseudoknotted,turn,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,hairpin-loop,internal-loop,junction-loop,kissing-loop 62 U . A.U62 0.002 anti,~C2'-endo,non-pair-contact,hairpin-loop,internal-loop,kissing-loop,phosphate 63 A . A.A63 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop 64 A [ A.A64 0.007 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop,kissing-loop 65 U [ A.U65 0.007 pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,kissing-loop 66 C [ A.C66 0.009 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,kissing-loop,phosphate 67 U . A.U67 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,junction-loop,kissing-loop 68 G . A.G68 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 69 C ) A.C69 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,kissing-loop 70 G ) A.G70 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,A-minor,phosphate 71 A . A.A71 0.006 turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,A-minor,phosphate,splayed-apart 72 U . A.U72 0.002 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 73 A . A.A73 0.005 anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart 74 A . A.A74 0.009 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,junction-loop,phosphate,splayed-apart 75 G . A.G75 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 76 C ( A.C76 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop 77 G ( A.G77 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop 78 U . A.U78 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 79 C ( A.C79 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,A-minor 80 G ( A.G80 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor 81 G ( A.G81 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop 82 U ( A.U82 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop 83 A . A.A83 0.006 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,cap-donor 84 A . A.A84 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,cap-acceptor 85 G ( A.G85 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,A-minor 86 G ( A.G86 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop 87 U ( A.U87 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 88 G ] A.G88 0.005 pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,kissing-loop,splayed-apart 89 A ] A.A89 0.006 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,kissing-loop 90 U ] A.U90 0.004 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,internal-loop,kissing-loop,phosphate 91 A . A.A91 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop 92 U . A.U92 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,internal-loop,kissing-loop 93 G ] A.G93 0.010 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,hairpin-loop,internal-loop,junction-loop,kissing-loop 94 A . A.A94 0.005 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,kissing-loop 95 A ) A.A95 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 96 C ) A.C96 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 97 C ) A.C97 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 98 G . A.G98 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 99 U . A.U99 0.003 anti,~C3'-endo,BII,non-pair-contact,internal-loop,splayed-apart 100 U . A.U100 0.001 anti,~C2'-endo,BII,non-pair-contact,internal-loop,splayed-apart 101 A . A.A101 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 102 U . A.U102 0.001 turn,anti,~C2'-endo,BII,non-stack,internal-loop,splayed-apart 103 A . A.A103 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,splayed-apart 104 A ) A.A104 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 105 C ) A.C105 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 106 C ) A.C106 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 107 G ) A.G107 0.003 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 108 G . A.G108 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 109 C ) A.C109 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 110 G ) A.G110 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 111 A . A.A111 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 112 U . A.U112 0.007 anti,~C3'-endo,BI,non-pair-contact,junction-loop 113 U . A.U113 0.003 anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart 114 U ) A.U114 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 115 C ) A.C115 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 116 C ) A.C116 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 117 G . A.G117 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 118 A . A.A118 0.005 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 119 A . A.A119 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 120 U . A.U120 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-donor,splayed-apart 121 G ( A.G121 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 122 G ( A.G122 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 123 G ( A.G123 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 124 G . A.G124 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 125 A . A.A125 0.006 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 126 A . A.A126 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate,splayed-apart 127 A . A.A127 0.005 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate,splayed-apart 128 C ) A.C128 0.009 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 129 C ) A.C129 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 130 C ) A.C130 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 131 A ( A.A131 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 132 G ( A.G132 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 133 U ( A.U133 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 134 G ( A.G134 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 135 U ( A.U135 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 136 G ( A.G136 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 137 U ( A.U137 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 138 U . A.U138 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 139 U . A.U139 0.003 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 140 C . A.C140 0.011 turn,syn,~C2'-endo,non-stack,hairpin-loop,splayed-apart 141 G . A.G141 0.009 turn,syn,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,phosphate 142 A ) A.A142 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 143 C ) A.C143 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 144 A ) A.A144 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 145 C ) A.C145 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 146 A ) A.A146 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 147 C ) A.C147 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 148 U ) A.U148 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 149 A . A.A149 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 150 U ( A.U150 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 151 C ( A.C151 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 152 A ( A.A152 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 153 U ( A.U153 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 154 U ( A.U154 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 155 A ( A.A155 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 156 A ( A.A156 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 157 C ( A.C157 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 158 U ( A.U158 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 159 G . A.G159 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 160 A . A.A160 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 161 A . A.A161 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 162 U . A.U162 0.002 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop 163 C . A.C163 0.010 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 164 C . A.C164 0.009 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 165 A . A.A165 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 166 U . A.U166 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 167 A . A.A167 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor 168 G ) A.G168 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-donor 169 G ) A.G169 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 170 U ) A.U170 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 171 U ) A.U171 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 172 A ) A.A172 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 173 A ) A.A173 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 174 U ) A.U174 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 175 G ) A.G175 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 176 A ) A.A176 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 177 G . A.G177 0.011 syn,~C2'-endo,non-pair-contact,junction-loop,phosphate 178 G ) A.G178 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 179 C ) A.C179 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 180 G . A.G180 0.003 anti,~C3'-endo,non-pair-contact,junction-loop 181 A . A.A181 0.006 anti,~C3'-endo,BI,non-pair-contact,junction-loop 182 A . A.A182 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor 183 C . A.C183 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor 184 C ( A.C184 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 185 G ( A.G185 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 186 G ( A.G186 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 187 G ( A.G187 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 188 G ( A.G188 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 189 G . A.G189 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 190 A . A.A190 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,ribose-zipper 191 A . A.A191 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,phosphate 192 C . A.C192 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 193 U . A.U193 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 194 G ( A.G194 0.004 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,multiplet,hairpin-loop,internal-loop,A-minor,kissing-loop 195 A . A.A195 0.004 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 196 A . A.A196 0.007 turn,syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,A-minor,kissing-loop,phosphate,splayed-apart 197 A . A.A197 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 198 C [ A.C198 0.009 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,hairpin-loop,kissing-loop,cap-donor 199 A . A.A199 0.006 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,kissing-loop,cap-acceptor,splayed-apart 200 U . A.U200 0.009 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 201 C ) A.C201 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,multiplet,hairpin-loop,internal-loop,A-minor,kissing-loop 202 U . A.U202 0.007 anti,~C3'-endo,non-pair-contact,internal-loop 203 A . A.A203 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 204 A . A.A204 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 205 G . A.G205 0.003 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop 206 U . A.U206 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor 207 A . A.A207 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 208 C ) A.C208 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 209 C ) A.C209 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 210 C ) A.C210 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 211 C ) A.C211 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 212 G ) A.G212 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 213 A . A.A213 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 214 G . A.G214 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor 215 G . A.G215 0.002 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor 216 A . A.A216 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 217 A . A.A217 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 218 A . A.A218 0.006 anti,~C3'-endo,BI,non-pair-contact,junction-loop 219 A . A.A219 0.004 anti,~C3'-endo,BI,non-pair-contact,junction-loop 220 G . A.G220 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop 221 A . A.A221 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 222 A . A.A222 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 223 A . A.A223 0.006 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart 224 U ( A.U224 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 225 C ( A.C225 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 226 A . A.A226 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 227 A . A.A227 0.005 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,A-minor 228 C . A.C228 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate 229 C . A.C229 0.005 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop 230 G ) A.G230 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate 231 A ) A.A231 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop 232 G . A.G232 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 233 A . A.A233 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 234 U . A.U234 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop 235 U ( A.U235 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 236 C ( A.C236 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 237 C ( A.C237 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 238 C ( A.C238 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 239 C ( A.C239 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 240 C . A.C240 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 241 A . A.A241 0.006 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 242 G . A.G242 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop 243 U . A.U243 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 244 A . A.A244 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 245 G ( A.G245 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 246 C ( A.C246 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop,phosphate 247 G . A.G247 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,kissing-loop,phosphate,splayed-apart 248 G ] A.G248 0.004 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 249 C . A.C249 0.002 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 250 G . A.G250 0.002 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop 251 A . A.A251 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,kissing-loop,phosphate 252 G ) A.G252 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop 253 C ) A.C253 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 254 G . A.G254 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 255 A . A.A255 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 256 A . A.A256 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 257 C . A.C257 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 258 G ) A.G258 0.001 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 259 G ) A.G259 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 260 G ) A.G260 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 261 G ) A.G261 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 262 A ) A.A262 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper 263 G . A.G263 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,ribose-zipper 264 C . A.C264 0.004 anti,~C3'-endo,BII,non-stack,non-pair-contact,junction-loop,splayed-apart 265 A . A.A265 0.006 anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart 266 G ( A.G266 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 267 C ( A.C267 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 268 C ( A.C268 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 269 C ( A.C269 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop 270 A . A.A270 0.007 turn,anti,~C3'-endo,non-pair-contact,internal-loop 271 G ( A.G271 0.003 k-turn,anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 272 A ( A.A272 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 273 G ( A.G273 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 274 C ( A.C274 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 275 C . A.C275 0.006 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 276 U . A.U276 0.003 k-turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop 277 G . A.G277 0.009 turn,k-turn,syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,splayed-apart 278 A . A.A278 0.020 k-turn,syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart 279 A . A.A279 0.010 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 280 U . A.U280 0.009 k-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop 281 C ( A.C281 0.010 k-turn,anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop 282 A ( A.A282 0.006 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 283 G ( A.G283 0.004 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 284 U ( A.U284 0.005 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 285 G ( A.G285 0.003 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 286 U ( A.U286 0.006 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 287 G . A.G287 0.003 anti,~C3'-endo,BI,non-pair-contact,internal-loop 288 U ( A.U288 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 289 G ( A.G289 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 290 U . A.U290 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 291 G ( A.G291 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 292 U ( A.U292 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 293 U . A.U293 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 294 A . A.A294 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 295 G ( A.G295 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 296 U ( A.U296 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 297 G ( A.G297 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 298 G . A.G298 0.004 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,phosphate 299 A . A.A299 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,A-minor,ribose-zipper 300 A . A.A300 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-acceptor,phosphate,splayed-apart 301 G ( A.G301 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 302 C ( A.C302 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 303 G ( A.G303 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 304 U . A.U304 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 305 C ( A.C305 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 306 U . A.U306 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 307 G . A.G307 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor,splayed-apart 308 G . A.G308 0.008 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 309 A . A.A309 0.006 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 310 A . A.A310 0.008 u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 311 A . A.A311 0.005 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 312 G ) A.G312 0.012 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,phosphate,splayed-apart 313 G . A.G313 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 314 C ) A.C314 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 315 G ) A.G315 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 316 C ) A.C316 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 317 G [ A.G317 0.009 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 318 C [ A.C318 0.010 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,ribose-zipper 319 G . A.G319 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,ribose-zipper 320 A . A.A320 0.005 anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,junction-loop,cap-acceptor,phosphate,splayed-apart 321 U . A.U321 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 322 A . A.A322 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,phosphate 323 C . A.C323 0.009 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,phosphate,splayed-apart 324 A . A.A324 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 325 G ( A.G325 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop 326 G ( A.G326 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop 327 G ( A.G327 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop 328 U . A.U328 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 329 G . A.G329 0.003 turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,junction-loop,cap-acceptor,phosphate,splayed-apart 330 A . A.A330 0.012 syn,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop 331 C . A.C331 0.001 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,splayed-apart 332 A . A.A332 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,splayed-apart 333 G ] A.G333 0.004 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart 334 C ] A.C334 0.003 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,cap-donor,phosphate,splayed-apart 335 C ) A.C335 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,phosphate,splayed-apart 336 C ) A.C336 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 337 C ) A.C337 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-acceptor,phosphate 338 G . A.G338 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,cap-donor 339 U . A.U339 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 340 A . A.A340 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 341 C ) A.C341 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 342 A ) A.A342 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 343 C ) A.C343 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 344 A . A.A344 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 345 A . A.A345 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 346 A . A.A346 0.016 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 347 A . A.A347 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 348 A ) A.A348 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 349 U ) A.U349 0.004 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 350 G . A.G350 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 351 C ) A.C351 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 352 A ) A.A352 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 353 C . A.C353 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 354 A ) A.A354 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 355 U ) A.U355 0.004 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 356 G ) A.G356 0.008 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 357 C ) A.C357 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 358 U ) A.U358 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 359 G ) A.G359 0.016 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 360 U . A.U360 0.009 k-turn,anti,~C3'-endo,non-pair-contact,internal-loop 361 G . A.G361 0.013 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 362 A . A.A362 0.017 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 363 G ) A.G363 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 364 C ) A.C364 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 365 U ) A.U365 0.006 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 366 C ) A.C366 0.004 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 367 G . A.G367 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop 368 A . A.A368 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 369 U . A.U369 0.001 anti,~C2'-endo,BII,non-stack,non-pair-contact,internal-loop 370 G ) A.G370 0.013 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,phosphate,splayed-apart 371 A . A.A371 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 372 G . A.G372 0.001 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop 373 U . A.U373 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 374 A . A.A374 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 375 G ( A.G375 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 376 G ( A.G376 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 377 G . A.G377 0.002 anti,~C3'-endo,BI,non-pair-contact,internal-loop 378 C ( A.C378 0.005 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,internal-loop 379 G . A.G379 0.002 anti,~C3'-endo,BI,non-pair-contact,internal-loop 380 G ( A.G380 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 381 G ( A.G381 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 382 A ( A.A382 0.008 anti,~C3'-endo,BI,non-stack,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 383 C . A.C383 0.005 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 384 A . A.A384 0.008 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 385 C . A.C385 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 386 G . A.G386 0.001 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 387 U . A.U387 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 388 G . A.G388 0.003 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 389 G . A.G389 0.001 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop 390 U . A.U390 0.001 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop 391 A . A.A391 0.005 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop 392 U ) A.U392 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 393 C ) A.C393 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 394 C ) A.C394 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 395 U . A.U395 0.001 anti,~C2'-endo,non-pair-contact,internal-loop 396 G ) A.G396 0.003 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 397 U . A.U397 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 398 C ) A.C398 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 399 U ) A.U399 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 400 G . A.G400 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 401 A . A.A401 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 402 A . A.A402 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,phosphate 403 U . A.U403 0.001 anti,~C2'-endo,BII,non-pair-contact,junction-loop 404 A . A.A404 0.006 turn,syn,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 405 U . A.U405 0.003 turn,anti,~C3'-endo,non-stack,junction-loop,splayed-apart 406 G ( A.G406 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,A-minor,cap-acceptor,splayed-apart 407 G ( A.G407 0.003 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 408 G . A.G408 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 409 G ( A.G409 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 410 G ( A.G410 0.005 anti,~C3'-endo,BII,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,A-minor,splayed-apart 411 G . A.G411 0.002 anti,~C2'-endo,BII,non-stack,hairpin-loop,splayed-apart 412 A . A.A412 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 413 C . A.C413 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop 414 C . A.C414 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop 415 A . A.A415 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 416 U . A.U416 0.011 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 417 C ) A.C417 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,A-minor 418 C ) A.C418 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 419 U . A.U419 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 420 C ) A.C420 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 421 C ) A.C421 0.002 anti,~C2'-endo,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,A-minor 422 A . A.A422 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop 423 A . A.A423 0.005 anti,~C2'-endo,non-pair-contact,junction-loop 424 G ) A.G424 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 425 G ) A.G425 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 426 C ) A.C426 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 427 U . A.U427 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 428 A . A.A428 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 429 A . A.A429 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,ribose-zipper 430 A . A.A430 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,ribose-zipper 431 U . A.U431 0.005 anti,~C3'-endo,BI,non-stack,non-canonical,multiplet,junction-loop 432 A . A.A432 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 433 C ) A.C433 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 434 U ) A.U434 0.004 anti,~C2'-endo,BII,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 435 C . A.C435 0.005 turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop 436 C . A.C436 0.004 anti,~C3'-endo,BI,non-stack,non-pair-contact,internal-loop 437 U ) A.U437 0.006 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop 438 G ) A.G438 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 439 A ) A.A439 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 440 C ) A.C440 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 441 U ) A.U441 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 442 G ) A.G442 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 443 A . A.A443 0.005 turn,anti,~C3'-endo,non-canonical,multiplet,bulge,A-minor,phosphate,splayed-apart 444 C ) A.C444 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 445 C ) A.C445 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 446 G . A.G446 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop 447 A . A.A447 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 448 U . A.U448 0.001 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 449 A . A.A449 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,phosphate,splayed-apart 450 G . A.G450 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 451 U . A.U451 0.003 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 452 G . A.G452 0.005 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 453 A . A.A453 0.005 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 454 A . A.A454 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart 455 C . A.C455 0.002 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 456 C . A.C456 0.001 turn,anti,~C2'-endo,non-canonical,multiplet,junction-loop,splayed-apart 457 A . A.A457 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,splayed-apart 458 G . A.G458 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop 459 U . A.U459 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 460 A . A.A460 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 461 C ( A.C461 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 462 C ( A.C462 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 463 G . A.G463 0.004 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 464 U . A.U464 0.009 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 465 G . A.G465 0.006 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,phosphate 466 A . A.A466 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-donor,phosphate 467 G ) A.G467 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-acceptor,phosphate 468 G ) A.G468 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 469 G . A.G469 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 470 A . A.A470 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 471 A . A.A471 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate 472 A . A.A472 0.006 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 473 G . A.G473 0.002 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 474 G . A.G474 0.004 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 475 C . A.C475 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,splayed-apart 476 G . A.G476 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor 477 A . A.A477 0.007 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 478 A . A.A478 0.005 anti,~C3'-endo,non-pair-contact,junction-loop,cap-donor,phosphate 479 A . A.A479 0.009 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor 480 A . A.A480 0.011 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 481 G ( A.G481 0.010 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,internal-loop,junction-loop,A-minor,phosphate 482 A . A.A482 0.005 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 483 A . A.A483 0.011 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,cap-acceptor,phosphate,splayed-apart 484 C ( A.C484 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor,cap-donor 485 C ( A.C485 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 486 C ( A.C486 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 487 C ( A.C487 0.004 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,hairpin-loop 488 G . A.G488 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 489 G . A.G489 0.005 u-turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 490 C . A.C490 0.001 turn,u-turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 491 G . A.G491 0.012 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 492 A . A.A492 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 493 G ) A.G493 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 494 G ) A.G494 0.003 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 495 G ) A.G495 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 496 G ) A.G496 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor 497 A . A.A497 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 498 G . A.G498 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 499 U . A.U499 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop 500 G . A.G500 0.004 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor 501 A . A.A501 0.005 turn,u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 502 A . A.A502 0.005 u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,phosphate 503 A . A.A503 0.006 turn,u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 504 A . A.A504 0.006 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 505 A . A.A505 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate,splayed-apart 506 G . A.G506 0.001 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 507 A . A.A507 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,splayed-apart 508 A . A.A508 0.005 turn,anti,~C2'-endo,internal-loop,splayed-apart 509 C ) A.C509 0.003 anti,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,internal-loop,junction-loop,A-minor,cap-acceptor,splayed-apart 510 C ) A.C510 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart 511 U . A.U511 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 512 G . A.G512 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 513 A . A.A513 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 514 A . A.A514 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 515 A . A.A515 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,A-minor 516 C ) A.C516 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 517 C . A.C517 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 518 G ) A.G518 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 519 U ) A.U519 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 520 G ) A.G520 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 521 U ) A.U521 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 522 A ) A.A522 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 523 C ) A.C523 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 524 G ) A.G524 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 525 U ) A.U525 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 526 A . A.A526 0.012 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,A-minor,splayed-apart 527 C . A.C527 0.002 turn,anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 528 A . A.A528 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor 529 A . A.A529 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 530 G . A.G530 0.004 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 531 C ( A.C531 0.002 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,splayed-apart 532 A . A.A532 0.012 turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate 533 G ( A.G533 0.011 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,phosphate 534 U . A.U534 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 535 G ( A.G535 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 536 G ( A.G536 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 537 G . A.G537 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 538 A . A.A538 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 539 G ( A.G539 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 540 C ( A.C540 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 541 A ( A.A541 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 542 C ( A.C542 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 543 G ( A.G543 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 544 C . A.C544 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop 545 U . A.U545 0.013 syn,~C3'-endo,non-pair-contact,hairpin-loop 546 U . A.U546 0.004 turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 547 A . A.A547 0.006 anti,~C3'-endo,non-stack,hairpin-loop,splayed-apart 548 G . A.G548 0.004 turn,anti,~C3'-endo,BII,non-stack,non-pair-contact,hairpin-loop 549 G . A.G549 0.002 turn,anti,~C3'-endo,non-stack,hairpin-loop,splayed-apart 550 C ) A.C550 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 551 G ) A.G551 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 552 U ) A.U552 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 553 G ) A.G553 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 554 U ) A.U554 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 555 G . A.G555 0.003 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 556 A . A.A556 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 557 C ) A.C557 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 558 U ) A.U558 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 559 G . A.G559 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 560 C ) A.C560 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 561 G . A.G561 0.002 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 562 U { A.U562 0.006 pseudoknotted,anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor,splayed-apart 563 A . A.A563 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 564 C ( A.C564 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor 565 C . A.C565 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 566 U ( A.U566 0.005 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,phosphate 567 U . A.U567 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop 568 U . A.U568 0.005 u-turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor 569 U . A.U569 0.004 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 570 G . A.G570 0.003 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 571 U . A.U571 0.001 u-turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 572 A . A.A572 0.007 turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 573 U . A.U573 0.003 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 574 A . A.A574 0.005 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 575 A ) A.A575 0.008 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,splayed-apart 576 U . A.U576 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 577 G ) A.G577 0.004 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor 578 G . A.G578 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 579 G ( A.G579 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 580 U ( A.U580 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate 581 C ( A.C581 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 582 A ( A.A582 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 583 G ( A.G583 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 584 C ( A.C584 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 585 G . A.G585 0.003 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 586 A . A.A586 0.004 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor 587 C . A.C587 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate 588 U . A.U588 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 589 U ( A.U589 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 590 A ( A.A590 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 591 U ( A.U591 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 592 A ( A.A592 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 593 U ( A.U593 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 594 U ( A.U594 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 595 C ( A.C595 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 596 U ( A.U596 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 597 G ( A.G597 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 598 U ( A.U598 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 599 A ( A.A599 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 600 G ( A.G600 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 601 C ( A.C601 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 602 A . A.A602 0.005 anti,~C3'-endo,BI,non-pair-contact,junction-loop 603 A . A.A603 0.005 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 604 G ( A.G604 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 605 G ( A.G605 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 606 U . A.U606 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 607 U . A.U607 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 608 A . A.A608 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,ribose-zipper,phosphate 609 A . A.A609 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 610 C ( A.C610 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 611 C ( A.C611 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 612 G . A.G612 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 613 A . A.A613 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 614 A . A.A614 0.006 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,splayed-apart 615 U . A.U615 0.002 turn,anti,~C2'-endo,hairpin-loop,splayed-apart 616 A . A.A616 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 617 G ) A.G617 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 618 G ) A.G618 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 619 G . A.G619 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 620 G . A.G620 0.004 turn,syn,~C2'-endo,non-pair-contact,internal-loop,phosphate 621 A . A.A621 0.011 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,cap-acceptor 622 G . A.G622 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 623 C ) A.C623 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 624 C ) A.C624 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 625 G . A.G625 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 626 A . A.A626 0.006 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 627 A . A.A627 0.008 anti,~C2'-endo,BII,non-pair-contact,junction-loop,phosphate,splayed-apart 628 G ( A.G628 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 629 G ( A.G629 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate 630 G . A.G630 0.002 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 631 A . A.A631 0.006 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 632 A . A.A632 0.005 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 633 A . A.A633 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 634 C ) A.C634 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 635 C ) A.C635 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 636 G . A.G636 0.004 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 637 A . A.A637 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 638 G ( A.G638 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 639 U ( A.U639 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 640 C ( A.C640 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 641 U ( A.U641 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 642 U . A.U642 0.005 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 643 A . A.A643 0.006 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 644 A . A.A644 0.008 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 645 C . A.C645 0.001 u-turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate 646 U . A.U646 0.005 turn,anti,~C3'-endo,non-stack,hairpin-loop,splayed-apart 647 G ) A.G647 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart 648 G ) A.G648 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 649 G ) A.G649 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 650 C ) A.C650 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 651 G . A.G651 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 652 U . A.U652 0.005 anti,~C3'-endo,BII,non-pair-contact,junction-loop 653 U . A.U653 0.006 turn,anti,~C3'-endo,non-stack,junction-loop 654 A . A.A654 0.009 syn,~C3'-endo,BI,non-stack,junction-loop,splayed-apart 655 A . A.A655 0.006 anti,~C2'-endo,BII,non-pair-contact,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 656 G ) A.G656 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 657 U ) A.U657 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 658 U ) A.U658 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 659 G ) A.G659 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 660 C ) A.C660 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 661 A ) A.A661 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 662 G ) A.G662 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 663 G ) A.G663 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 664 G ) A.G664 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 665 U ) A.U665 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 666 A ) A.A666 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 667 U ) A.U667 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 668 A ) A.A668 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop 669 G . A.G669 0.011 turn,u-turn,anti,~C3'-endo,non-pair-contact,junction-loop 670 A . A.A670 0.005 u-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 671 C ( A.C671 0.004 u-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,cap-donor,splayed-apart 672 C ( A.C672 0.007 u-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate 673 C . A.C673 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 674 G ( A.G674 0.004 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate 675 A . A.A675 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 676 A . A.A676 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 677 A . A.A677 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 678 C ( A.C678 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,ribose-zipper 679 C ( A.C679 0.009 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 680 C ( A.C680 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 681 G ( A.G681 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 682 G ( A.G682 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 683 U ( A.U683 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 684 G . A.G684 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop 685 A . A.A685 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,splayed-apart 686 U . A.U686 0.003 turn,anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 687 C . A.C687 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 688 U . A.U688 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop 689 A ( A.A689 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 690 G ( A.G690 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 691 C ( A.C691 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 692 C ( A.C692 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 693 A ( A.A693 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 694 U ( A.U694 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 695 G . A.G695 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 696 G ( A.G696 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 697 G ( A.G697 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 698 C ( A.C698 0.007 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,phosphate,splayed-apart 699 A . A.A699 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart 700 G ( A.G700 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 701 G ( A.G701 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 702 U ( A.U702 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 703 U . A.U703 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 704 G . A.G704 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 705 A . A.A705 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,cap-acceptor,phosphate 706 A . A.A706 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 707 G ( A.G707 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 708 G ( A.G708 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 709 U ( A.U709 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 710 U ( A.U710 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 711 G ( A.G711 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 712 G ( A.G712 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 713 G . A.G713 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 714 U . A.U714 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 715 A . A.A715 0.005 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 716 A . A.A716 0.005 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 717 C . A.C717 0.012 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 718 A . A.A718 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 719 C ) A.C719 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 720 U ) A.U720 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 721 A ) A.A721 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 722 A ) A.A722 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 723 C ) A.C723 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 724 U ) A.U724 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 725 G . A.G725 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 726 G . A.G726 0.003 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 727 A . A.A727 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,cap-acceptor,phosphate 728 G . A.G728 0.003 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 729 G . A.G729 0.015 turn,syn,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 730 A ) A.A730 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 731 C ) A.C731 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 732 C ) A.C732 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 733 G . A.G733 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop 734 A . A.A734 0.015 anti,~C3'-endo,non-pair-contact,junction-loop 735 A . A.A735 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop,A-minor,phosphate 736 C ( A.C736 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 737 C ( A.C737 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 738 G . A.G738 0.010 anti,~C3'-endo,BI,non-pair-contact,internal-loop 739 A . A.A739 0.005 anti,~C2'-endo,non-pair-contact,internal-loop 740 C ( A.C740 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 741 U ( A.U741 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 742 A ( A.A742 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 743 A ( A.A743 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 744 U ( A.U744 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop 745 G . A.G745 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 746 U . A.U746 0.001 anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 747 U . A.U747 0.003 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,splayed-apart 748 G . A.G748 0.003 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 749 A . A.A749 0.009 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop 750 A . A.A750 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 751 A . A.A751 0.005 turn,anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,phosphate,splayed-apart 752 A . A.A752 0.005 syn,~C2'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 753 A ) A.A753 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop 754 U ) A.U754 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 755 U ) A.U755 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 756 A ) A.A756 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 757 G ) A.G757 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 758 C . A.C758 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 759 G ) A.G759 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 760 G ) A.G760 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 761 A . A.A761 0.005 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 762 U . A.U762 0.003 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 763 G ) A.G763 0.009 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,cap-acceptor,phosphate,splayed-apart 764 A . A.A764 0.008 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix,bulge,phosphate,splayed-apart 765 C ) A.C765 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 766 U ) A.U766 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 767 U . A.U767 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 768 G ) A.G768 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 769 U ) A.U769 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 770 G ) A.G770 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate 771 G ) A.G771 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 772 C ) A.C772 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 773 U ) A.U773 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 774 G . A.G774 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop 775 G ( A.G775 0.007 anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,phosphate,splayed-apart 776 G . A.G776 0.002 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 777 G ( A.G777 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 778 G ( A.G778 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 779 U . A.U779 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 780 G . A.G780 0.002 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 781 A . A.A781 0.005 turn,anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,phosphate,splayed-apart 782 A . A.A782 0.006 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 783 A . A.A783 0.006 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 784 G . A.G784 0.001 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 785 G . A.G785 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 786 C ) A.C786 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate 787 C ) A.C787 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate,splayed-apart 788 A . A.A788 0.008 anti,~C2'-endo,BII,non-pair-contact,internal-loop,phosphate,splayed-apart 789 A . A.A789 0.005 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 790 U . A.U790 0.001 anti,~C2'-endo,BI,non-stack,non-pair-contact,internal-loop,splayed-apart 791 C ) A.C791 0.004 anti,~C2'-endo,BII,non-stack,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,splayed-apart 792 A . A.A792 0.006 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 793 A . A.A793 0.005 anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart 794 A ) A.A794 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,splayed-apart 795 C ) A.C795 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 796 C ) A.C796 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 797 G ) A.G797 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 798 G ) A.G798 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 799 G ) A.G799 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 800 A . A.A800 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 801 G . A.G801 0.004 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 802 A . A.A802 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 803 U . A.U803 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 804 A . A.A804 0.005 anti,~C3'-endo,BII,non-pair-contact,internal-loop,splayed-apart 805 G . A.G805 0.003 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 806 C ) A.C806 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,splayed-apart 807 U . A.U807 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 808 G ) A.G808 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 809 G ) A.G809 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 810 U . A.U810 0.003 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 811 U . A.U811 0.003 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 812 C ( A.C812 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper,phosphate,splayed-apart 813 U ( A.U813 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,ribose-zipper,phosphate 814 C ( A.C814 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 815 C ( A.C815 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 816 C ( A.C816 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 817 C ( A.C817 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 818 G . A.G818 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 819 A . A.A819 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,A-minor,phosphate 820 A . A.A820 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate 821 A . A.A821 0.006 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,splayed-apart 822 G ( A.G822 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,splayed-apart 823 C ( A.C823 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 824 U ( A.U824 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 825 A ( A.A825 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 826 U ( A.U826 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,A-minor,splayed-apart 827 U . A.U827 0.004 turn,anti,~C3'-endo,non-stack,hairpin-loop,cap-donor,phosphate,splayed-apart 828 U . A.U828 0.002 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,splayed-apart 829 A . A.A829 0.006 anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 830 G . A.G830 0.002 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 831 G ) A.G831 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,A-minor,cap-acceptor,splayed-apart 832 U ) A.U832 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 833 A ) A.A833 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 834 G ) A.G834 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 835 C ) A.C835 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 836 G . A.G836 0.004 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 837 C ( A.C837 0.005 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,bulge,A-minor 838 C ( A.C838 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 839 U ( A.U839 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 840 C ( A.C840 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 841 G ( A.G841 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 842 U ( A.U842 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 843 G ( A.G843 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 844 A ( A.A844 0.006 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 845 A . A.A845 0.010 syn,~C3'-endo,non-pair-contact,bulge,splayed-apart 846 U . A.U846 0.003 turn,anti,~C3'-endo,non-stack,non-pair-contact,bulge,splayed-apart 847 U ( A.U847 0.013 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,phosphate,splayed-apart 848 C ( A.C848 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 849 A ( A.A849 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 850 U ( A.U850 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 851 C ( A.C851 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 852 U ( A.U852 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 853 C ( A.C853 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 854 C ( A.C854 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 855 G ( A.G855 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 856 G ( A.G856 0.001 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 857 G . A.G857 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 858 G . A.G858 0.003 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 859 G . A.G859 0.001 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 860 U . A.U860 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 861 A . A.A861 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 862 G ( A.G862 0.003 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 863 A ( A.A863 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 864 G ( A.G864 0.002 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet 865 C . A.C865 0.001 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 866 A . A.A866 0.006 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop 867 C . A.C867 0.006 break,anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop 868 C . A.C908 0.005 anti,~C3'-endo,BI,non-stack,ss-non-loop 869 A . A.A909 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 870 A . A.A910 0.006 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart 871 A . A.A911 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 872 C ) A.C912 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,splayed-apart 873 U ) A.U913 0.001 anti,~C2'-endo,BII,non-stack,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 874 G . A.G914 0.001 turn,anti,~C3'-endo,non-pair-contact,bulge 875 C ) A.C915 0.012 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 876 G . A.G916 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 877 A . A.A917 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 878 A . A.A918 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 879 U . A.U919 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 880 A . A.A920 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 881 C ) A.C921 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 882 C ) A.C922 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 883 G ) A.G923 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 884 G ) A.G924 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 885 A ) A.A925 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 886 G ) A.G926 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 887 A . A.A927 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge 888 A ) A.A928 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 889 U ) A.U929 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 890 G ) A.G930 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 891 U . A.U931 0.001 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart 892 U . A.U932 0.001 turn,anti,~C2'-endo,BII,non-pair-contact,bulge,cap-donor,splayed-apart 893 A ) A.A933 0.015 turn,syn,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,cap-acceptor 894 U ) A.U934 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 895 C ) A.C935 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 896 A ) A.A936 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 897 C ) A.C937 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 898 G ) A.G938 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 899 G ) A.G939 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 900 G ) A.G940 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 901 A . A.A941 0.012 anti,~C3'-endo,non-pair-contact,bulge,ribose-zipper,phosphate 902 G ) A.G942 0.008 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,A-minor,ribose-zipper 903 A . A.A943 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 904 C . A.C944 0.005 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,splayed-apart 905 A . A.A945 0.006 anti,~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,splayed-apart 906 C ( A.C946 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate,splayed-apart 907 A ( A.A947 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 908 C ( A.C948 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 909 G ( A.G949 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 910 G . A.G950 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 911 C ( A.C951 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 912 G ( A.G952 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 913 G ( A.G953 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 914 G . A.G954 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 915 U ( A.U955 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 916 G . A.G956 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 917 C . A.C957 0.001 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 918 U . A.U958 0.004 turn,anti,~C3'-endo,BII,non-stack,hairpin-loop,splayed-apart 919 A . A.A959 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 920 A . A.A960 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 921 C . A.C961 0.001 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 922 G ) A.G962 0.014 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,splayed-apart 923 U . A.U963 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 924 C ) A.C964 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 925 C ) A.C965 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 926 G ) A.G966 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 927 U . A.U967 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 928 C ) A.C968 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 929 G ) A.G969 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 930 U ) A.U970 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 931 G ) A.G971 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 932 A . A.A972 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 933 A . A.A973 0.008 break,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,cap-donor,phosphate 934 G . A.G974 0.014 syn,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 935 A . A.A975 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 936 G ( A.G976 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,A-minor 937 G ( A.G977 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 938 G ( A.G978 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 939 A . A.A979 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 940 A . A.A980 0.005 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,ribose-zipper,splayed-apart 941 A . A.A981 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper 942 C . A.C982 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 943 A . A.A983 0.007 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 944 A . A.A984 0.006 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 945 C ) A.C985 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart 946 C ) A.C986 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper 947 C ) A.C987 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,A-minor,ribose-zipper 948 A . A.A988 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 949 G . A.G989 0.002 anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,phosphate 950 A . A.A990 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 951 C ( A.C991 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,splayed-apart 952 C ( A.C992 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 953 G ( A.G993 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 954 C ( A.C994 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 955 C . A.C995 0.001 turn,anti,~C2'-endo,non-pair-contact,bulge,phosphate,splayed-apart 956 A ( A.A996 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 957 G ( A.G997 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 958 C ( A.C998 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 959 U . A.U999 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 960 A . A.A1000 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 961 A . A.A1001 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 962 G ( A.G1002 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 963 G ( A.G1003 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 964 U ( A.U1004 0.006 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 965 C [ A.C1005 0.009 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,cap-donor,phosphate,splayed-apart 966 C [ A.C1006 0.006 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 967 C [ A.C1007 0.003 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 968 A . A.A1008 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop 969 A . A.A1009 0.007 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,phosphate 970 A . A.A1010 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 971 G ( A.G1011 0.003 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate,splayed-apart 972 U . A.U1012 0.001 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,bulge,cap-acceptor,splayed-apart 973 C ( A.C1013 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 974 A ( A.A1014 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 975 U ( A.U1015 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 976 G ( A.G1016 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 977 G ( A.G1017 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 978 U ( A.U1018 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 979 U . A.U1019 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 980 A . A.A1020 0.006 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor 981 A . A.A1021 0.022 syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor 982 G . A.G1022 0.003 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 983 U . A.U1023 0.005 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 984 G ( A.G1024 0.003 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate 985 G . A.G1025 0.003 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,splayed-apart 986 G . A.G1026 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,phosphate,splayed-apart 987 A . A.A1027 0.006 anti,~C3'-endo,BII,non-pair-contact,junction-loop 988 A . A.A1028 0.005 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 989 A . A.A1029 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop 990 C ( A.C1030 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 991 G ( A.G1031 0.001 break,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end 992 C ) A.C1123 0.005 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,phosphate 993 G ) A.G1124 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 994 G . A.G1125 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 995 A . A.A1126 0.007 anti,~C2'-endo,non-pair-contact,junction-loop,phosphate 996 A . A.A1127 0.006 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,junction-loop 997 G . A.G1128 0.004 anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,cap-donor 998 A . A.A1129 0.005 anti,~C3'-endo,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 999 U . A.U1130 0.001 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 1000 G . A.G1131 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,cap-acceptor 1001 U . A.U1132 0.002 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor 1002 A . A.A1133 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 1003 A . A.A1134 0.006 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,phosphate,splayed-apart 1004 C . A.C1135 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 1005 G ] A.G1136 0.005 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1006 G ] A.G1137 0.002 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1007 G ] A.G1138 0.010 pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop 1008 G . A.G1139 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate 1009 C ) A.C1140 0.002 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-donor,phosphate 1010 U . A.U1141 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor,phosphate 1011 A . A.A1142 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,cap-acceptor 1012 A . A.A1143 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor,splayed-apart 1013 A ) A.A1144 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 1014 C ) A.C1145 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1015 C ) A.C1146 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1016 A ) A.A1147 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1017 U ) A.U1148 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1018 G ) A.G1149 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1019 C ) A.C1150 0.005 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop 1020 A ) A.A1151 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1021 C ) A.C1152 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper,phosphate 1022 C ) A.C1153 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper,phosphate 1023 G . A.G1154 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1024 A . A.A1155 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1025 A . A.A1156 0.006 turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart 1026 G ) A.G1157 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1027 C ) A.C1158 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1028 U ) A.U1159 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1029 G ) A.G1160 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1030 C ) A.C1161 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1031 G ) A.G1162 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1032 G ) A.G1163 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 1033 C ( A.C1164 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1034 A ( A.A1165 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1035 G ( A.G1166 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1036 C ( A.C1167 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1037 G ( A.G1168 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1038 A . A.A1169 0.006 anti,~C3'-endo,non-pair-contact,internal-loop 1039 C . A.C1170 0.016 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1040 G ( A.G1171 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1041 C ( A.C1172 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1042 U . A.U1173 0.004 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop 1043 U . A.U1174 0.010 syn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1044 A . A.A1175 0.009 turn,syn,~C3'-endo,non-stack,hairpin-loop,splayed-apart 1045 U . A.U1176 0.005 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1046 G ) A.G1177 0.003 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1047 C ) A.C1178 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1048 G . A.G1179 0.002 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor 1049 U . A.U1180 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-donor 1050 U ) A.U1181 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1051 G ) A.G1182 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1052 U ) A.U1183 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 1053 U ) A.U1184 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1054 G ) A.G1185 0.002 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,splayed-apart 1055 G . A.G1186 0.005 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart 1056 G . A.G1187 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,phosphate 1057 U . A.U1188 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,cap-acceptor,phosphate 1058 A . A.A1189 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,ribose-zipper 1059 G ) A.G1190 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,ribose-zipper,phosphate 1060 G ) A.G1191 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1061 G ) A.G1192 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1062 G ) A.G1193 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1063 A ) A.A1194 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1064 G ) A.G1195 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1065 C ( A.C1196 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor 1066 G ( A.G1197 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1067 U ( A.U1198 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1068 U ( A.U1199 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1069 C ( A.C1200 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1070 U ( A.U1201 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1071 G ( A.G1202 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1072 U . A.U1203 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 1073 A . A.A1204 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1074 A . A.A1205 0.006 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 1075 G ( A.G1206 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1076 C ( A.C1207 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1077 C ( A.C1208 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1078 U . A.U1209 0.005 k-turn,anti,~C3'-endo,non-pair-contact,internal-loop 1079 G . A.G1210 0.006 turn,k-turn,syn,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1080 C . A.C1211 0.001 turn,k-turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 1081 G . A.G1212 0.005 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 1082 A . A.A1213 0.005 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1083 A . A.A1214 0.006 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1084 G ( A.G1215 0.004 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1085 G ( A.G1216 0.005 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1086 U . A.U1217 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1087 G ( A.G1218 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1088 U ( A.U1219 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1089 G ( A.G1220 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1090 C ( A.C1221 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1091 U ( A.U1222 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 1092 G . A.G1223 0.002 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,phosphate,splayed-apart 1093 U . A.U1224 0.004 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1094 G . A.G1225 0.003 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate 1095 A . A.A1226 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 1096 G ) A.G1227 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1097 G ) A.G1228 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1098 C ) A.C1229 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1099 A ) A.A1230 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1100 U ) A.U1231 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1101 G . A.G1232 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1102 C ) A.C1233 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1103 U ) A.U1234 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1104 G . A.G1235 0.005 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1105 G . A.G1236 0.007 k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 1106 A . A.A1237 0.007 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 1107 G ) A.G1238 0.003 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1108 G ) A.G1239 0.012 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1109 U ) A.U1240 0.003 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1110 A . A.A1241 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 1111 U . A.U1242 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1112 C ) A.C1243 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1113 A ) A.A1244 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1114 G ) A.G1245 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1115 A ) A.A1246 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1116 A ) A.A1247 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1117 G . A.G1248 0.003 turn,anti,~C2'-endo,non-pair-contact,bulge,splayed-apart 1118 U ) A.U1249 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1119 G ) A.G1250 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1120 C . A.C1251 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 1121 G . A.G1252 0.003 anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart 1122 A . A.A1253 0.005 anti,~C2'-endo,non-pair-contact,junction-loop,A-minor,phosphate,splayed-apart 1123 A . A.A1254 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,phosphate,splayed-apart 1124 U . A.U1255 0.004 turn,anti,~C3'-endo,junction-loop,phosphate,splayed-apart 1125 G ) A.G1256 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1126 C ) A.C1257 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1127 U ) A.U1258 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 1128 G ) A.G1259 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1129 A ) A.A1260 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1130 C ) A.C1261 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1131 A ( A.A1262 0.020 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1132 U . A.U1263 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1133 A . A.A1264 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1134 A . A.A1265 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 1135 G . A.G1266 0.002 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,internal-loop,phosphate 1136 U . A.U1267 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1137 A . A.A1268 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1138 A ( A.A1269 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1139 C ( A.C1270 0.007 turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1140 G . A.G1271 0.001 anti,~C3'-endo,BII,non-stack,non-pair-contact,junction-loop,splayed-apart 1141 A . A.A1272 0.005 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1142 U . A.U1273 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 1143 A . A.A1274 0.006 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate,splayed-apart 1144 A . A.A1275 0.006 anti,~C2'-endo,BII,non-pair-contact,junction-loop,A-minor,phosphate,splayed-apart 1145 A ( A.A1276 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1146 G ( A.G1277 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1147 C ( A.C1278 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1148 G ( A.G1279 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1149 G ( A.G1280 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1150 G ( A.G1281 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1151 U . A.U1282 0.009 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1152 G . A.G1283 0.004 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor 1153 A . A.A1284 0.005 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor 1154 A . A.A1285 0.005 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 1155 A . A.A1286 0.006 u-turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1156 A . A.A1287 0.013 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1157 G . A.G1288 0.011 syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 1158 C ) A.C1289 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1159 C ) A.C1290 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1160 C ) A.C1291 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1161 G ) A.G1292 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1162 C ) A.C1293 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1163 U ) A.U1294 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1164 C ( A.C1295 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1165 G ( A.G1296 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 1166 C ( A.C1297 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate 1167 C ( A.C1298 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1168 G . A.G1299 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 1169 G . A.G1300 0.004 turn,anti,~C2'-endo,BII,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 1170 A . A.A1301 0.006 syn,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1171 A . A.A1302 0.005 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,A-minor,phosphate,splayed-apart 1172 G ( A.G1303 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,splayed-apart 1173 A ( A.A1304 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1174 C . A.C1305 0.006 anti,~C3'-endo,non-pair-contact,internal-loop 1175 C ( A.C1306 0.014 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,internal-loop,junction-loop 1176 A . A.A1307 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1177 A . A.A1308 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 1178 G ( A.G1309 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1179 G ( A.G1310 0.003 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,bulge,A-minor 1180 G . A.G1311 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge 1181 U . A.U1312 0.002 turn,anti,~C2'-endo,non-pair-contact,bulge 1182 U ( A.U1313 0.017 turn,syn,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,helix-end,multiplet,bulge,junction-loop 1183 C ( A.C1314 0.013 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor,ribose-zipper 1184 C ( A.C1315 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper 1185 U ( A.U1316 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1186 G ( A.G1317 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1187 U ( A.U1318 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1188 C ( A.C1319 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor 1189 C . A.C1320 0.002 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor,phosphate 1190 A . A.A1321 0.014 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1191 A . A.A1322 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,phosphate 1192 C . A.C1323 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 1193 G ( A.G1324 0.002 anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,A-minor,splayed-apart 1194 U . A.U1325 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1195 U . A.U1326 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1196 A . A.A1327 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1197 A . A.A1328 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 1198 U . A.U1329 0.003 turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 1199 C ) A.C1330 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,A-minor,splayed-apart 1200 G . A.G1331 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1201 G . A.G1332 0.004 turn,syn,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1202 G ) A.G1333 0.003 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor,splayed-apart 1203 G ) A.G1334 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1204 C ) A.C1335 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1205 A ) A.A1336 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1206 G ) A.G1337 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,phosphate 1207 G ) A.G1338 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor 1208 G . A.G1339 0.003 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 1209 U . A.U1340 0.007 syn,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1210 G . A.G1341 0.002 anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1211 A . A.A1342 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 1212 G [ A.G1343 0.013 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,splayed-apart 1213 U [ A.U1344 0.002 pseudoknotted,anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate,splayed-apart 1214 C ( A.C1345 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1215 G ( A.G1346 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1216 A ( A.A1347 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1217 C . A.C1348 0.015 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1218 C ( A.C1349 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1219 C ( A.C1350 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 1220 C ( A.C1351 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,ribose-zipper 1221 U . A.U1352 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,bulge 1222 A ( A.A1353 0.006 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop,A-minor,phosphate 1223 A . A.A1354 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate 1224 G ( A.G1355 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1225 G ( A.G1356 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1226 C ( A.C1357 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1227 G . A.G1358 0.002 anti,~C3'-endo,BII,non-pair-contact,internal-loop,splayed-apart 1228 A . A.A1359 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,phosphate,splayed-apart 1229 G . A.G1360 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1230 G ( A.G1361 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1231 C ( A.C1362 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1232 C ( A.C1363 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,A-minor 1233 G . A.G1364 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1234 A . A.A1365 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1235 A . A.A1366 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 1236 A . A.A1367 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 1237 G ) A.G1368 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,A-minor 1238 G ) A.G1369 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1239 C ) A.C1370 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1240 G . A.G1371 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1241 U . A.U1372 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1242 A . A.A1373 0.006 anti,~C3'-endo,non-pair-contact,internal-loop 1243 G ) A.G1374 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1244 U ) A.U1375 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1245 C ) A.C1376 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1246 G . A.G1377 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1247 A . A.A1378 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 1248 U ) A.U1379 0.006 turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop,phosphate 1249 G ) A.G1380 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,phosphate 1250 G ) A.G1381 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1251 G ) A.G1382 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1252 A . A.A1383 0.006 anti,~C3'-endo,BI,non-pair-contact,junction-loop,ribose-zipper 1253 A . A.A1384 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-acceptor,splayed-apart 1254 A ( A.A1385 0.009 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,splayed-apart 1255 C ( A.C1386 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1256 A ( A.A1387 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1257 G ( A.G1388 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1258 G ( A.G1389 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1259 U . A.U1390 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 1260 U . A.U1391 0.007 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor 1261 A . A.A1392 0.005 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper 1262 A . A.A1393 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate 1263 U . A.U1394 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1264 A . A.A1395 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 1265 U . A.U1396 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1266 U . A.U1397 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1267 C ) A.C1398 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-donor,phosphate,splayed-apart 1268 C ) A.C1399 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1269 U ) A.U1400 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1270 G ) A.G1401 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1271 U ) A.U1402 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1272 A ] A.A1403 0.006 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1273 C ] A.C1404 0.005 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 1274 U ( A.U1405 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper 1275 U ( A.U1406 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1276 G ( A.G1407 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1277 G . A.G1408 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1278 U ( A.U1409 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1279 G ( A.G1410 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1280 U ( A.U1411 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1281 U ( A.U1412 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1282 A ( A.A1413 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1283 C ( A.C1414 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1284 U ( A.U1415 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,splayed-apart 1285 G . A.G1416 0.003 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1286 C ( A.C1417 0.010 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1287 G . A.G1418 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1288 A . A.A1419 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1289 A . A.A1420 0.005 turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart 1290 G ( A.G1421 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor,splayed-apart 1291 G ( A.G1422 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 1292 G ( A.G1423 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1293 G ( A.G1424 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop 1294 G . A.G1425 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1295 G . A.G1426 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1296 A . A.A1427 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,cap-acceptor 1297 C . A.C1428 0.002 anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 1298 G ( A.G1429 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1299 G ( A.G1430 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1300 A ( A.A1431 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1301 G ( A.G1432 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1302 A . A.A1433 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1303 A . A.A1434 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1304 G ( A.G1435 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 1305 G ( A.G1436 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1306 C ( A.C1437 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1307 U . A.U1438 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1308 A . A.A1439 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 1309 U ( A.U1440 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 1310 G ( A.G1441 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1311 U ( A.U1442 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1312 U ( A.U1443 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1313 G ( A.G1444 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1314 G ( A.G1445 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1315 C ( A.C1446 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 1316 C ( A.C1447 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 1317 G ( A.G1448 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1318 G ( A.G1449 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1319 G ( A.G1450 0.013 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 1320 C ( A.C1451 0.002 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,bulge,junction-loop,kissing-loop 1321 G . A.G1452 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,kissing-loop,splayed-apart 1322 A . A.A1453 0.005 turn,anti,~C2'-endo,hairpin-loop,junction-loop,kissing-loop,splayed-apart 1323 C . A.C1454 0.002 anti,~C2'-endo,non-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 1324 G [ A.G1455 0.012 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 1325 G [ A.G1456 0.002 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop 1326 U [ A.U1457 0.005 pseudoknotted,anti,~C3'-endo,BII,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 1327 U . A.U1458 0.001 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,kissing-loop,cap-donor,splayed-apart 1328 G ) A.G1459 0.005 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,bulge,junction-loop,kissing-loop,cap-acceptor,splayed-apart 1329 U . A.U1460 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart 1330 C ) A.C1461 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,splayed-apart 1331 C ) A.C1462 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1332 C ) A.C1463 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1333 G ) A.G1464 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1334 G ) A.G1465 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1335 U ) A.U1466 0.005 turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1336 U ( A.U1467 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart 1337 U . A.U1468 0.006 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1338 A . A.A1469 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate,splayed-apart 1339 A . A.A1470 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor 1340 G ( A.G1471 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1341 C ( A.C1472 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1342 G ( A.G1473 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1343 U ( A.U1474 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1344 G . A.G1475 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,ss-non-loop 1345 U . A.U1476 0.006 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop 1346 A . A.A1477 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,A-minor 1347 G . A.G1478 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1348 G ( A.G1479 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1349 C ( A.C1480 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1350 U ( A.U1481 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,bulge 1351 G ( A.G1482 0.004 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,internal-loop 1352 G . A.G1483 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1353 U ( A.U1484 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1354 U ( A.U1485 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1355 U ( A.U1486 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1356 U ( A.U1487 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1357 C ( A.C1488 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1358 C ( A.C1489 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1359 A . A.A1490 0.007 turn,syn,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart 1360 G ( A.G1491 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1361 G ( A.G1492 0.002 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1362 C . A.C1493 0.001 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1363 A . A.A1494 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop 1364 A . A.A1495 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper 1365 A . A.A1496 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,splayed-apart 1366 U . A.U1497 0.001 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 1367 C ) A.C1498 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1368 C ) A.C1499 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1369 G ) A.G1500 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1370 G ) A.G1501 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1371 A ) A.A1502 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1372 A ) A.A1503 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1373 A ) A.A1504 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1374 A ) A.A1505 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1375 U . A.U1506 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1376 C ) A.C1507 0.008 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,internal-loop 1377 A . A.A1508 0.006 anti,~C3'-endo,BI,non-pair-contact,bulge 1378 A . A.A1509 0.007 anti,~C2'-endo,non-pair-contact,bulge 1379 G ) A.G1510 0.001 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,bulge,phosphate 1380 G ) A.G1511 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1381 C ) A.C1512 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1382 U . A.U1513 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1383 G . A.G1514 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,ribose-zipper 1384 A . A.A1515 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,A-minor,ribose-zipper,cap-acceptor 1385 G [ A.G1516 0.008 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,cap-donor 1386 G ) A.G1517 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1387 C ) A.C1518 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1388 G ) A.G1519 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1389 U ) A.U1520 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1390 G . A.G1521 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1391 A . A.A1522 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate,splayed-apart 1392 U . A.U1523 0.001 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1393 G . A.G1524 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart 1394 A ) A.A1525 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1395 C ( A.C1526 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1396 G . A.G1527 0.005 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1397 A . A.A1528 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1398 G ( A.G1529 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1399 G ( A.G1530 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1400 C ( A.C1531 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1401 A ( A.A1532 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1402 C ( A.C1533 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1403 U . A.U1534 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1404 A . A.A1535 0.006 turn,syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1405 C . A.C1536 0.002 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor 1406 G . A.G1537 0.010 turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1407 G ) A.G1538 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1408 U ) A.U1539 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1409 G ) A.G1540 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1410 C ) A.C1541 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1411 U ) A.U1542 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1412 G . A.G1543 0.003 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 1413 A . A.A1544 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 1414 A . A.A1545 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 1415 G ) A.G1546 0.004 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart 1416 C ) A.C1547 0.004 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1417 A ) A.A1548 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1418 A ) A.A1549 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1419 C ) A.C1550 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1420 A ) A.A1551 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1421 A . A.A1552 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1422 A . A.A1553 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1423 U . A.U1554 0.005 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1424 G ) A.G1555 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1425 C ) A.C1556 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 1426 C ) A.C1557 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper,phosphate 1427 C . A.C1558 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1428 U . A.U1559 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1429 G . A.G1560 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1430 C ) A.C1561 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1431 U ) A.U1562 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1432 U ) A.U1563 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1433 C ) A.C1564 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1434 C ( A.C1565 0.008 anti,~C2'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 1435 A . A.A1566 0.007 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1436 G . A.G1567 0.005 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 1437 G ) A.G1568 0.010 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,phosphate,splayed-apart 1438 A . A.A1569 0.006 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 1439 A . A.A1570 0.004 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-donor,phosphate 1440 A . A.A1571 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,phosphate 1441 A . A.A1572 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 1442 G . A.G1573 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1443 C ) A.C1574 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1444 C ) A.C1575 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1445 U ) A.U1576 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1446 C ) A.C1577 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor,ribose-zipper 1447 U . A.U1578 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,ribose-zipper,cap-donor,phosphate 1448 A . A.A1579 0.017 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1449 A . A.A1580 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1450 G ) A.G1581 0.009 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 1451 C . A.C1582 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 1452 A . A.A1583 0.009 syn,~C3'-endo,BII,non-stack,non-pair-contact,internal-loop,splayed-apart 1453 U . A.U1584 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1454 C . A.C1585 0.014 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate,splayed-apart 1455 A . A.A1586 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1456 G ) A.G1587 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1457 G ) A.G1588 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1458 U ) A.U1589 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1459 A ) A.A1590 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1460 A ) A.A1591 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1461 C ) A.C1592 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1462 A ) A.A1593 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1463 U . A.U1594 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1464 C ) A.C1595 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1465 A ) A.A1596 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1466 A ) A.A1597 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1467 A . A.A1598 0.013 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1468 U ) A.U1599 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1469 C ) A.C1600 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1470 G ) A.G1601 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1471 U . A.U1602 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart 1472 A ) A.A1603 0.012 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge,junction-loop,splayed-apart 1473 C ) A.C1604 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,bulge,A-minor 1474 C ) A.C1605 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1475 C . A.C1606 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,splayed-apart 1476 C . A.C1607 0.001 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1477 A . A.A1608 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-acceptor,phosphate,splayed-apart 1478 A . A.A1609 0.006 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1479 A . A.A1610 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate,splayed-apart 1480 C ( A.C1611 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1481 C ( A.C1612 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1482 G . A.G1613 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1483 A . A.A1614 0.006 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1484 C . A.C1615 0.002 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1485 A . A.A1616 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,splayed-apart 1486 C . A.C1617 0.002 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1487 A . A.A1618 0.006 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1488 G ) A.G1619 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1489 G ) A.G1620 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1490 U . A.U1621 0.006 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop 1491 G ) A.G1622 0.022 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1492 G . A.G1623 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 1493 U ) A.U1624 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1494 C ) A.C1625 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 1495 A . A.A1626 0.004 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1496 G ( A.G1627 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1497 G ( A.G1628 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1498 U . A.U1629 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop 1499 A . A.A1630 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 1500 G . A.G1631 0.002 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart 1501 A . A.A1632 0.005 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,splayed-apart 1502 G . A.G1633 0.002 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,phosphate,splayed-apart 1503 A . A.A1634 0.006 turn,u-turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 1504 A . A.A1635 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1505 U . A.U1636 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 1506 A . A.A1637 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1507 C ) A.C1638 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 1508 C ) A.C1639 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1509 A . A.A1640 0.017 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 1510 A . A.A1641 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1511 G ) A.G1642 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1512 G ) A.G1643 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1513 C ) A.C1644 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1514 G ) A.G1645 0.003 turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,splayed-apart 1515 C . A.C1646 0.003 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1516 U . A.U1647 0.001 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart 1517 U ( A.U1648 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1518 G ( A.G1649 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1519 A ( A.A1650 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1520 G ( A.G1651 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1521 A . A.A1652 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 1522 G . A.G1653 0.009 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1523 A . A.A1654 0.006 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor 1524 A . A.A1655 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 1525 C ( A.C1656 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1526 U ( A.U1657 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1527 C ( A.C1658 0.008 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 1528 G ( A.G1659 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1529 G ( A.G1660 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1530 G ( A.G1661 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1531 U ( A.U1662 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1532 G ( A.G1663 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1533 A . A.A1664 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 1534 A ( A.A1665 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1535 G ( A.G1666 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1536 G . A.G1667 0.004 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge 1537 A . A.A1668 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,bulge,cap-donor 1538 A ( A.A1669 0.017 turn,syn,~C3'-endo,non-stack,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop,cap-acceptor 1539 C . A.C1670 0.010 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1540 U . A.U1671 0.008 u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor 1541 A . A.A1672 0.007 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop 1542 G . A.G1673 0.002 u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1543 G ( A.G1674 0.008 turn,u-turn,anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor,phosphate,splayed-apart 1544 C . A.C1675 0.012 turn,anti,~C3'-endo,BI,non-pair-contact,junction-loop 1545 A . A.A1676 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop 1546 A . A.A1677 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 1547 A . A.A1678 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1548 A . A.A1679 0.006 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1549 U . A.U1680 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 1550 G . A.G1681 0.006 anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 1551 G ( A.G1682 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,cap-acceptor,phosphate,splayed-apart 1552 U ( A.U1683 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1553 G ( A.G1684 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1554 C ( A.C1685 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1555 C ( A.C1686 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1556 G . A.G1687 0.006 anti,~C3'-endo,non-pair-contact,internal-loop 1557 U . A.U1688 0.005 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 1558 A . A.A1689 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1559 A . A.A1690 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1560 C ( A.C1691 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1561 U . A.U1692 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1562 U { A.U1693 0.002 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,phosphate,splayed-apart 1563 C . A.C1694 0.001 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 1564 G . A.G1695 0.010 turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1565 G ) A.G1696 0.002 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1566 G . A.G1697 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1567 A . A.A1698 0.006 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart 1568 G . A.G1699 0.004 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1569 A . A.A1700 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate,splayed-apart 1570 A . A.A1701 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 1571 G ) A.G1702 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1572 G ) A.G1703 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1573 C ) A.C1704 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1574 A ) A.A1705 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1575 C ) A.C1706 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 1576 G ( A.G1707 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1577 C ( A.C1708 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 1578 U ( A.U1709 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,ribose-zipper 1579 G ( A.G1710 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1580 A ( A.A1711 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1581 U ( A.U1712 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1582 A . A.A1713 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart 1583 U . A.U1714 0.004 turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart 1584 G . A.G1715 0.002 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 1585 U . A.U1716 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,phosphate 1586 A . A.A1717 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1587 G ( A.G1718 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1588 G ( A.G1719 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1589 U ( A.U1720 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1590 G . A.G1721 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1591 A . A.A1722 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1592 G . A.G1723 0.003 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1593 G ( A.G1724 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1594 U ( A.U1725 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1595 C ( A.C1726 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1596 C . A.C1727 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,bulge 1597 C ( A.C1728 0.006 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,hairpin-loop,bulge 1598 U . A.U1729 0.004 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop 1599 C . A.C1730 0.004 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop 1600 G . A.G1731 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1601 C ] A.C1732 0.004 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 1602 G ) A.G1733 0.004 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,bulge,splayed-apart 1603 G ) A.G1734 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1604 A ) A.A1735 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1605 U ) A.U1736 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1606 G . A.G1737 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 1607 G . A.G1738 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1608 A . A.A1739 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1609 G ) A.G1740 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1610 C ) A.C1741 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1611 U ) A.U1742 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1612 G . A.G1743 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1613 A . A.A1744 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1614 A . A.A1745 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1615 A ) A.A1746 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1616 U ) A.U1747 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1617 C ) A.C1748 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1618 A ) A.A1749 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1619 G ) A.G1750 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1620 U ) A.U1751 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1621 C ( A.C1752 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 1622 G . A.G1753 0.005 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 1623 A . A.A1754 0.008 turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor 1624 A . A.A1755 0.006 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart 1625 G ) A.G1756 0.005 u-turn,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-donor,phosphate,splayed-apart 1626 A . A.A1757 0.006 turn,anti,~C3'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 1627 U . A.U1758 0.002 anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 1628 A . A.A1759 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 1629 C . A.C1760 0.011 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1630 C . A.C1761 0.010 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1631 A . A.A1762 0.005 anti,~C3'-endo,non-pair-contact,junction-loop 1632 G . A.G1763 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,phosphate 1633 C ( A.C1764 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1634 U ( A.U1765 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1635 G ( A.G1766 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1636 G ( A.G1767 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1637 C ( A.C1768 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1638 U ( A.U1769 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1639 G ( A.G1770 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1640 C ( A.C1771 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1641 A ( A.A1772 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1642 A . A.A1773 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop 1643 C . A.C1774 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 1644 U . A.U1775 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1645 G ( A.G1776 0.022 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,phosphate 1646 U ( A.U1777 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 1647 U . A.U1778 0.004 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1648 U . A.U1779 0.004 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1649 A . A.A1780 0.006 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1650 U . A.U1781 0.001 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 1651 U . A.U1782 0.006 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1652 A . A.A1783 0.005 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1653 A . A.A1784 0.005 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1654 A . A.A1785 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1655 A . A.A1786 0.005 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1656 A ) A.A1787 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart 1657 C ) A.C1788 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 1658 A . A.A1789 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate 1659 C . A.C1790 0.003 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,ss-non-loop,cap-donor,phosphate 1660 A . A.A1791 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-acceptor,phosphate 1661 G ( A.G1792 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,A-minor 1662 C ( A.C1793 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1663 A ( A.A1794 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1664 C ( A.C1795 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1665 U . A.U1796 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1666 G ( A.G1797 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 1667 U ( A.U1798 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,A-minor 1668 G . A.G1799 0.002 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 1669 C . A.C1800 0.003 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1670 A . A.A1801 0.006 turn,anti,~C2'-endo,non-stack,internal-loop,phosphate,splayed-apart 1671 A . A.A1802 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,splayed-apart 1672 A . A.A1803 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor 1673 C ( A.C1804 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1674 A ( A.A1805 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1675 C ( A.C1806 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1676 G . A.G1807 0.003 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart 1677 A . A.A1808 0.006 turn,u-turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1678 A . A.A1809 0.004 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,A-minor 1679 A . A.A1810 0.005 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,phosphate 1680 G ) A.G1811 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1681 U ) A.U1812 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1682 G ) A.G1813 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1683 G . A.G1814 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1684 A . A.A1815 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 1685 C . A.C1816 0.004 turn,anti,~C3'-endo,internal-loop,splayed-apart 1686 G . A.G1817 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 1687 U . A.U1818 0.002 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 1688 A . A.A1819 0.006 anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1689 U . A.U1820 0.003 turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart 1690 A ) A.A1821 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1691 C ) A.C1822 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 1692 G . A.G1823 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1693 G ) A.G1824 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1694 U ) A.U1825 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1695 G ) A.G1826 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1696 U ) A.U1827 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,A-minor,phosphate 1697 G . A.G1828 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,ss-non-loop,splayed-apart 1698 A } A.A1829 0.008 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,cap-acceptor,phosphate,splayed-apart 1699 C ( A.C1830 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,cap-donor 1700 G ( A.G1831 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1701 C ( A.C1832 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1702 C ( A.C1833 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,A-minor 1703 U . A.U1834 0.005 anti,~C3'-endo,BII,non-stack,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 1704 G . A.G1835 0.001 break,anti,~C3'-endo,non-stack,ss-non-loop,splayed-apart 1705 G . A.G1968 0.001 anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop 1706 A . A.A1969 0.006 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,A-minor 1707 A . A.A1970 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,A-minor,phosphate,splayed-apart 1708 U . A.U1971 0.003 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1709 G ) A.G1972 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,A-minor,splayed-apart 1710 G ) A.G1973 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1711 C ) A.C1974 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1712 G ) A.G1975 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1713 U . A.U1976 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop 1714 A . A.A1977 0.006 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1715 A . A.A1978 0.005 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate 1716 U ) A.U1979 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1717 G ) A.G1980 0.001 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1718 A . A.A1981 0.004 turn,anti,~C3'-endo,non-pair-contact,bulge,cap-acceptor,splayed-apart 1719 U ) A.U1982 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1720 G ) A.G1983 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1721 G ) A.G1984 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1722 C ) A.C1985 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1723 C ) A.C1986 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack 1724 A ) A.A1987 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1725 G ) A.G1988 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1726 G . A.G1989 0.005 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1727 C ) A.C1990 0.006 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor 1728 U . A.U1991 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1729 G . A.G1992 0.011 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 1730 U ) A.U1993 0.007 turn,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 1731 C ) A.C1994 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1732 U ) A.U1995 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1733 C . A.C1996 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1734 C ) A.C1997 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1735 A ) A.A1998 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1736 C ) A.C1999 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1737 C ) A.C2000 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 1738 C ) A.C2001 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 1739 G ) A.G2002 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1740 A ) A.A2003 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1741 G ) A.G2004 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1742 A . A.A2005 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 1743 C ) A.C2006 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1744 U ) A.U2007 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1745 C ) A.C2008 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1746 A ) A.A2009 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1747 G ) A.G2010 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1748 U ) A.U2011 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1749 G . A.G2012 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1750 A . A.A2013 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1751 A . A.A2014 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1752 A . A.A2015 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1753 U . A.U2016 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1754 U ) A.U2017 0.004 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-acceptor,splayed-apart 1755 G ) A.G2018 0.003 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart 1756 A . A.A2019 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1757 A [ A.A2020 0.006 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 1758 C . A.C2021 0.001 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1759 U . A.U2022 0.001 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 1760 C ( A.C2023 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate,splayed-apart 1761 G ( A.G2024 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 1762 C ( A.C2025 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,hairpin-loop,cap-donor,phosphate 1763 U ( A.U2026 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 1764 G ( A.G2027 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop,junction-loop,A-minor 1765 U . A.U2028 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop 1766 G . A.G2029 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop,junction-loop,splayed-apart 1767 A . A.A2030 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,junction-loop,splayed-apart 1768 A . A.A2031 0.006 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 1769 G . A.G2032 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 1770 A } A.A2033 0.006 pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,phosphate,splayed-apart 1771 U ] A.U2034 0.005 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 1772 G . A.G2035 0.002 anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,phosphate,splayed-apart 1773 C ) A.C2036 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop,junction-loop,A-minor,ribose-zipper,cap-donor,phosphate,splayed-apart 1774 A ) A.A2037 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,ribose-zipper 1775 G ) A.G2038 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1776 U ) A.U2039 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1777 G ) A.G2040 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 1778 U . A.U2041 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1779 A . A.A2042 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1780 C ( A.C2043 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate,splayed-apart 1781 C ( A.C2044 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1782 C ( A.C2045 0.006 break,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1783 G ( A.G2046 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 1784 C ( A.C2047 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1785 G ( A.G2048 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1786 G ( A.G2049 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1787 C ( A.C2050 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1788 A . A.A2051 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge 1789 A ( A.A2052 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 1790 G ( A.G2053 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1791 A . A.A2054 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,splayed-apart 1792 C . A.C2055 0.004 turn,anti,~C3'-endo,BII,non-stack,non-pair-contact,internal-loop,splayed-apart 1793 G ( A.G2056 0.002 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,internal-loop,splayed-apart 1794 G ( A.G2057 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 1795 A . A.A2058 0.005 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1796 A . A.A2059 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop 1797 A . A.A2060 0.005 break,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop 1798 U . A.U2609 0.001 anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop 1799 C . A.C2610 0.001 anti,~C2'-endo,BII,non-stack,non-pair-contact,ss-non-loop 1800 C ) A.C2611 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,phosphate 1801 C ) A.C2612 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1802 U . A.U2613 0.004 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1803 A . A.A2614 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 1804 U . A.U2615 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1805 C ) A.C2616 0.017 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor,phosphate 1806 U ) A.U2617 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 1807 G ) A.G2618 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1808 C ) A.C2619 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1809 C ) A.C2620 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1810 G ) A.G2621 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1811 U ) A.U2622 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1812 G ) A.G2623 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 1813 G ) A.G2624 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1814 G ) A.G2625 0.012 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor 1815 C { A.C2626 0.012 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet 1816 G . A.G2627 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1817 C . A.C2628 0.006 turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 1818 U . A.U2629 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 1819 G ( A.G2630 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,splayed-apart 1820 G ( A.G2631 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1821 A ( A.A2632 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1822 G ( A.G2633 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1823 A ( A.A2634 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1824 A ( A.A2635 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1825 C ( A.C2636 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1826 U . A.U2637 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1827 G . A.G2638 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1828 A . A.A2639 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1829 G ( A.G2640 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1830 G ( A.G2641 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1831 G ( A.G2642 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1832 G ( A.G2643 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1833 G . A.G2644 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,phosphate 1834 G . A.G2645 0.008 syn,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 1835 C ( A.C2646 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate,splayed-apart 1836 U . A.U2647 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1837 G . A.G2648 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1838 C ( A.C2649 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1839 U ( A.U2650 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1840 C ( A.C2651 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1841 C ( A.C2652 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1842 U . A.U2653 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1843 A . A.A2654 0.006 anti,~C2'-endo,BII,non-pair-contact,internal-loop 1844 G . A.G2655 0.003 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop 1845 U . A.U2656 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1846 A . A.A2657 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1847 C ( A.C2658 0.012 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,phosphate 1848 G . A.G2659 0.003 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,phosphate 1849 A . A.A2660 0.005 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1850 G . A.G2661 0.002 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 1851 A . A.A2662 0.006 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 1852 G ) A.G2663 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1853 G . A.G2664 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1854 A . A.A2665 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1855 C . A.C2666 0.010 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1856 C . A.C2667 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1857 G ) A.G2668 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor 1858 G ) A.G2669 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1859 A ) A.A2670 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1860 G ) A.G2671 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1861 U . A.U2672 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1862 G . A.G2673 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1863 G ) A.G2674 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1864 A . A.A2675 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1865 C ( A.C2676 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1866 G ( A.G2677 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1867 C ( A.C2678 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1868 A ( A.A2679 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1869 U ( A.U2680 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,phosphate 1870 C . A.C2681 0.002 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop 1871 A . A.A2682 0.006 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor 1872 C . A.C2683 0.004 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1873 U ( A.U2684 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1874 G . A.G2685 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1875 G ( A.G2686 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1876 U ( A.U2687 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1877 G . A.G2688 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1878 U . A.U2689 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1879 U . A.U2690 0.001 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1880 C ( A.C2691 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,cap-donor,splayed-apart 1881 G ( A.G2692 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1882 G ( A.G2693 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1883 G ( A.G2694 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1884 U ( A.U2695 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor 1885 U ( A.U2696 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1886 G ( A.G2697 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1887 U ( A.U2698 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1888 C ( A.C2699 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1889 A ( A.A2700 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1890 U ( A.U2701 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 1891 G ] A.G2702 0.015 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 1892 C ] A.C2703 0.014 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop 1893 C ] A.C2704 0.015 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 1894 A . A.A2705 0.005 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,junction-loop,kissing-loop 1895 A ) A.A2706 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 1896 U ) A.U2707 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1897 G ) A.G2708 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1898 G ) A.G2709 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1899 C ) A.C2710 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1900 A ) A.A2711 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-acceptor,splayed-apart 1901 C . A.C2712 0.002 anti,~C2'-endo,non-stack,non-pair-contact,bulge,cap-acceptor,phosphate,splayed-apart 1902 U . A.U2713 0.003 turn,anti,~C2'-endo,non-pair-contact,bulge,cap-acceptor 1903 G ) A.G2714 0.004 turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor 1904 C ) A.C2715 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,cap-donor,phosphate 1905 C ) A.C2716 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1906 C ) A.C2717 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1907 G ) A.G2718 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1908 G . A.G2719 0.006 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1909 U . A.U2720 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1910 A . A.A2721 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1911 G ) A.G2722 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1912 C ) A.C2723 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1913 U . A.U2724 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1914 A ) A.A2725 0.009 anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1915 A . A.A2726 0.007 turn,anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate 1916 A ) A.A2727 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 1917 U ) A.U2728 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1918 G ) A.G2729 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1919 C ) A.C2730 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1920 G ) A.G2731 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1921 G . A.G2732 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 1922 A . A.A2733 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 1923 A . A.A2734 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1924 G . A.G2735 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1925 A ( A.A2736 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1926 G ( A.G2737 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1927 A . A.A2738 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1928 U . A.U2739 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1929 A . A.A2740 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 1930 A . A.A2741 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1931 G ( A.G2742 0.002 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 1932 U . A.U2743 0.005 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1933 G ( A.G2744 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1934 C ( A.C2745 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1935 U . A.U2746 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop 1936 G . A.G2747 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 1937 A . A.A2748 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 1938 A . A.A2749 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 1939 A . A.A2750 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1940 G . A.G2751 0.008 turn,syn,~C2'-endo,hairpin-loop,phosphate,splayed-apart 1941 C . A.C2752 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 1942 A . A.A2753 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 1943 U . A.U2754 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 1944 C . A.C2755 0.005 turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1945 U . A.U2756 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 1946 A . A.A2757 0.013 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 1947 A . A.A2758 0.006 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop 1948 G ) A.G2759 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1949 C ) A.C2760 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1950 A . A.A2761 0.006 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1951 C ) A.C2762 0.012 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 1952 G . A.G2763 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1953 A . A.A2764 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1954 A . A.A2765 0.013 turn,syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor 1955 A . A.A2766 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1956 C ) A.C2767 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1957 U ) A.U2768 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1958 U . A.U2769 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1959 G . A.G2770 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 1960 C ) A.C2771 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1961 C ) A.C2772 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1962 C ) A.C2773 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1963 C ) A.C2774 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1964 G . A.G2775 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1965 A . A.A2776 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 1966 G } A.G2777 0.004 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 1967 A . A.A2778 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1968 U . A.U2779 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate,splayed-apart 1969 G . A.G2780 0.001 turn,anti,~C2'-endo,non-stack,internal-loop,phosphate,splayed-apart 1970 A . A.A2781 0.004 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart 1971 G ) A.G2782 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 1972 U ) A.U2783 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1973 U ) A.U2784 0.010 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 1974 C ) A.C2785 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1975 U ) A.U2786 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1976 C ) A.C2787 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 1977 C ) A.C2788 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,ribose-zipper 1978 C ( A.C2789 0.007 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop 1979 U . A.U2790 0.004 anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart 1980 G ( A.G2791 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 1981 A ( A.A2792 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1982 C ( A.C2793 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1983 C ( A.C2794 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1984 C ( A.C2795 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge 1985 U ( A.U2796 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,bulge 1986 U . A.U2797 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1987 U . A.U2798 0.001 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 1988 A ) A.A2799 0.006 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,bulge,cap-acceptor,splayed-apart 1989 A . A.A2800 0.005 turn,anti,~C2'-endo,non-pair-contact,bulge,A-minor,splayed-apart 1990 G ) A.G2801 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge,splayed-apart 1991 G ) A.G2802 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1992 G ) A.G2803 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1993 U ) A.U2804 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1994 C ) A.C2805 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1995 C ( A.C2806 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1996 U . A.U2807 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 1997 G . A.G2808 0.003 turn,anti,~C2'-endo,non-pair-contact,internal-loop 1998 A . A.A2809 0.014 anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 1999 A . A.A2810 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,A-minor,ribose-zipper 2000 G ( A.G2811 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2001 G ( A.G2812 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2002 A . A.A2813 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2003 A . A.A2814 0.007 anti,~C3'-endo,BI,non-pair-contact,junction-loop 2004 C ( A.C2815 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2005 G ( A.G2816 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2006 U ( A.U2817 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 2007 U ( A.U2818 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2008 G ( A.G2819 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart 2009 A . A.A2820 0.006 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2010 A . A.A2821 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2011 G . A.G2822 0.002 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2012 A . A.A2823 0.012 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,splayed-apart 2013 C . A.C2824 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 2014 G . A.G2825 0.017 syn,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 2015 A . A.A2826 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2016 C ) A.C2827 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 2017 G ) A.G2828 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2018 A ) A.A2829 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2019 C ) A.C2830 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2020 G ) A.G2831 0.007 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate,splayed-apart 2021 U . A.U2832 0.003 anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 2022 U . A.U2833 0.001 turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart 2023 G . A.G2834 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart 2024 A . A.A2835 0.005 turn,anti,~C2'-endo,BII,non-pair-contact,junction-loop 2025 U ( A.U2836 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 2026 A ( A.A2837 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2027 G ( A.G2838 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2028 G ( A.G2839 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2029 C ( A.C2840 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2030 C ( A.C2841 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2031 G ( A.G2842 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2032 G ( A.G2843 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 2033 G . A.G2844 0.005 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2034 U . A.U2845 0.006 anti,~C3'-endo,non-pair-contact,internal-loop 2035 G ( A.G2846 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 2036 U ( A.U2847 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 2037 G . A.G2848 0.004 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2038 U . A.U2849 0.003 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart 2039 A . A.A2850 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 2040 A . A.A2851 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 2041 G ( A.G2852 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 2042 C ( A.C2853 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2043 G ( A.G2854 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2044 C ( A.C2855 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2045 A ( A.A2856 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2046 G . A.G2857 0.003 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,splayed-apart 2047 C . A.C2858 0.011 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2048 G . A.G2859 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate 2049 A . A.A2860 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 2050 U ) A.U2861 0.010 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2051 G ) A.G2862 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2052 C ) A.C2863 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2053 G ) A.G2864 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2054 U ) A.U2865 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 2055 U . A.U2866 0.001 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 2056 G . A.G2867 0.004 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 2057 A . A.A2868 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2058 G ) A.G2869 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,cap-donor 2059 C ) A.C2870 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop 2060 U . A.U2871 0.006 anti,~C3'-endo,BII,non-pair-contact,internal-loop 2061 A . A.A2872 0.005 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor 2062 A . A.A2873 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 2063 C ) A.C2874 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 2064 C ) A.C2875 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2065 G ) A.G2876 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2066 G ) A.G2877 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2067 U ) A.U2878 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2068 A . A.A2879 0.007 turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge 2069 C ) A.C2880 0.009 turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2070 U ) A.U2881 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2071 A ) A.A2882 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,phosphate 2072 A . A.A2883 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,cap-acceptor,phosphate,splayed-apart 2073 U . A.U2884 0.004 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 2074 G . A.G2885 0.002 anti,~C3'-endo,non-pair-contact,junction-loop 2075 A . A.A2886 0.007 anti,~C3'-endo,BI,non-pair-contact,junction-loop 2076 A . A.A2887 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2077 C ) A.C2888 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2078 C ) A.C2889 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2079 G . A.G2890 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2080 U . A.U2891 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2081 G ) A.G2892 0.003 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate,splayed-apart 2082 A . A.A2893 0.006 anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 2083 G ) A.G2894 0.006 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart 2084 G ) A.G2895 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,A-minor,splayed-apart 2085 C ) A.C2896 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2086 U ) A.U2897 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2087 U ) A.U2898 0.009 anti,~C3'-endo,BI,non-stack,canonical,helix,stem 2088 A ) A.A2899 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2089 A ) A.A2900 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2090 C ) A.C2901 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2091 C ) A.C2902 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 2092 U . A.U2903 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop **************************************************************************** List of 17 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-multiplets.pdb -- an ensemble of multiplets 3 dssr-stems.pdb -- an ensemble of stems 4 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 5 dssr-hairpins.pdb -- an ensemble of hairpin loops 6 dssr-bulges.pdb -- an ensemble of bulges 7 dssr-iloops.pdb -- an ensemble of internal loops 8 dssr-junctions.pdb -- an ensemble of junctions (multi-branch) 9 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 10 dssr-2ndstrs.ct -- secondary structure in connectivity table format 11 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 12 dssr-torsions.txt -- backbone torsion angles and suite names 13 dssr-splays.pdb -- an ensemble of splayed-apart units 14 dssr-Aminors.pdb -- an ensemble of A minor motifs (types I and II) 15 dssr-Kturns.pdb -- an ensemble of kink-turn motifs 16 dssr-stacks.pdb -- an ensemble of base stacks 17 dssr-atom2bases.pdb -- an ensemble of atom-base stacking interactions