Summary information and primary citation

PDB-id
5t4i; DSSR-derived features in text and JSON formats
Class
hydrolase-DNA
Method
X-ray (2.389 Å)
Summary
A novel domain in human exog converts apoptotic endonuclease to DNA-repair enzyme
Reference
Szymanski MR, Yu W, Gmyrek AM, White MA, Molineux IJ, Lee JC, Yin YW (2017): "A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease." Nat Commun, 8, 14959. doi: 10.1038/ncomms14959.
Abstract
Human EXOG (hEXOG) is a 5'-exonuclease that is crucial for mitochondrial DNA repair; the enzyme belongs to a nonspecific nuclease family that includes the apoptotic endonuclease EndoG. Here we report biochemical and structural studies of hEXOG, including structures in its apo form and in a complex with DNA at 1.81 and 1.85 Å resolution, respectively. A Wing domain, absent in other ββα-Me members, suppresses endonuclease activity, but confers on hEXOG a strong 5'-dsDNA exonuclease activity that precisely excises a dinucleotide using an intrinsic 'tape-measure'. The symmetrical apo hEXOG homodimer becomes asymmetrical upon binding to DNA, providing a structural basis for how substrate DNA bound to one active site allosterically regulates the activity of the other. These properties of hEXOG suggest a pathway for mitochondrial BER that provides an optimal substrate for subsequent gap-filling synthesis by DNA polymerase γ.

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