**************************************************************************** Note: By default, each nucleotide is identified by chainId.name#. So a common case would be B.A1689, meaning adenosine #1689 on chain B. One-letter base names for modified nucleotides are put in lower case (e.g., 'c' for 5MC). For further information about the output notation, please refer to the DSSR User Manual. Questions and suggestions are *always* welcome on the 3DNA Forum. Command: x3dna-dssr -i=5hl7.pdb -o=5hl7.out File name: 5hl7.pdb no. of DNA/RNA chains: 2 [X=2705,Y=114] no. of nucleotides: 2819 no. of atoms: 81462 no. of waters: 0 no. of metals: 514 [Mg=240,Mn=274] **************************************************************************** List of 1383 base pairs nt1 nt2 bp name Saenger LW DSSR 1 X.U3 X.A2919 U-A WC 20-XX cWW cW-W 2 X.U4 X.A2918 U-A WC 20-XX cWW cW-W 3 X.A5 X.U2917 A-U WC 20-XX cWW cW-W 4 X.A6 X.U2916 A-U WC 20-XX cWW cW-W 5 X.G7 X.C2915 G-C WC 19-XIX cWW cW-W 6 X.U8 X.A2914 U-A WC 20-XX cWW cW-W 7 X.U9 X.A2656 U-A rHoogsteen 24-XXIV tWH tW-M 8 X.U12 X.A571 U-A rHoogsteen 24-XXIV tWH tW-M 9 X.A13 X.A14 A+A Platform -- cSH cm+M 10 X.G15 X.U570 G-U Wobble 28-XXVIII cWW cW-W 11 X.G16 X.U569 G-U Wobble 28-XXVIII cWW cW-W 12 X.G17 X.C568 G-C WC 19-XIX cWW cW-W 13 X.C18 X.G567 C-G WC 19-XIX cWW cW-W 14 X.G19 X.U566 G-U Wobble 28-XXVIII cWW cW-W 15 X.C20 X.G565 C-G WC 19-XIX cWW cW-W 16 X.A21 X.U564 A-U WC 20-XX cWW cW-W 17 X.C22 X.G563 C-G WC 19-XIX cWW cW-W 18 X.G23 X.C562 G-C WC 19-XIX cWW cW-W 19 X.G24 X.C561 G-C WC 19-XIX cWW cW-W 20 X.U25 X.A560 U-A -- -- tWH tW-M 21 X.G26 X.A559 G-A Sheared 11-XI tSH tm-M 22 X.G27 X.A558 G-A Sheared 11-XI tSH tm-M 23 X.A28 X.G557 A-G Sheared 11-XI tHS tM-m 24 X.U29 X.U556 U-U -- 16-XVI cWW cW-W 25 X.G30 X.C555 G-C WC 19-XIX cWW cW-W 26 X.C31 X.G520 C-G WC 19-XIX cWW cW-W 27 X.C32 X.G519 C-G WC 19-XIX cWW cW-W 28 X.U33 X.A493 U-A rHoogsteen 24-XXIV tWH tW-M 29 X.U34 X.G519 U-G -- -- tWS tW-m 30 X.G35 X.C491 G-C WC 19-XIX cWW cW-W 31 X.G35 X.G492 G-G -- -- cW. cW-. 32 X.G35 X.G496 G+G -- 04-IV tSS tm+m 33 X.G36 X.C490 G-C WC 19-XIX cWW cW-W 34 X.C37 X.G488 C-G WC 19-XIX cWW cW-W 35 X.A38 X.U487 A-U WC 20-XX cWW cW-W 36 X.C39 X.G486 C-G WC 19-XIX cWW cW-W 37 X.C39 X.A658 C-A -- -- cSW cm-W 38 X.U40 X.A485 U-A WC 20-XX cWW cW-W 39 X.A41 X.U484 A-U WC 20-XX cWW cW-W 40 X.G42 X.C483 G-C WC 19-XIX cWW cW-W 41 X.A43 X.U482 A+U Hoogsteen 23-XXIII cHW cM+W 42 X.A44 X.U480 A-U WC 20-XX cWW cW-W 43 X.G45 X.A183 G+A -- 10-X tSW tm+W 44 X.G45 X.C479 G-C WC 19-XIX cWW cW-W 45 X.C46 X.G181 C-G WC 19-XIX cWW cW-W 46 X.C47 X.G180 C-G WC 19-XIX cWW cW-W 47 X.A49 X.U119 A+U Hoogsteen 23-XXIII cHW cM+W 48 X.G51 X.A117 G-A Sheared 11-XI tSH tm-M 49 X.G51 X.U119 G+U -- -- tWW tW+W 50 X.A52 X.A118 A+A -- 02-II tHH tM+M 51 X.A52 X.G180 A+G Linker -- tSS tm+m 52 X.A53 X.G116 A-G Sheared 11-XI tHS tM-m 53 X.G54 X.C115 G-C WC 19-XIX cWW cW-W 54 X.G55 X.C114 G-C WC 19-XIX cWW cW-W 55 X.A56 X.G70 A-G -- -- cWW cW-W 56 X.A56 X.U113 A-U WC 20-XX cWW cW-W 57 X.C57 X.G70 C-G WC 19-XIX cWW cW-W 58 X.G58 X.C69 G-C WC 19-XIX cWW cW-W 59 X.G58 X.A73 G+A Linker -- tSS tm+m 60 X.U59 X.A68 U-A WC 20-XX cWW cW-W 61 X.A61 X.U93 A-U WC 20-XX cWW cW-W 62 X.C62 X.G92 C-G WC 19-XIX cWW cW-W 63 X.U63 X.A65 U+A -- -- cWH cW+M 64 X.A64 X.A90 A+A -- 01-I tWW tW+W 65 X.A65 X.U89 A-U WC 20-XX cWW cW-W 66 X.A65 X.C502 A+C -- -- tSW tm+W 67 X.C66 X.G88 C-G WC 19-XIX cWW cW-W 68 X.C66 X.U89 C-U -- -- cWW cW-W 69 X.G67 X.U74 G-U Wobble 28-XXVIII cWW cW-W 70 X.G70 X.A71 G-A Platform -- cSW cm-W 71 X.G75 X.A110 G-A Imino 08-VIII cWW cW-W 72 X.C76 X.G109 C-G WC 19-XIX cWW cW-W 73 X.U77 X.A108 U-A WC 20-XX cWW cW-W 74 X.U78 X.G107 U-G Wobble 28-XXVIII cWW cW-W 75 X.U79 X.A106 U-A WC 20-XX cWW cW-W 76 X.U79 X.A389 U+A -- -- cSH cm+M 77 X.G80 X.C105 G-C WC 19-XIX cWW cW-W 78 X.G80 X.A337 G+A Linker -- tSS tm+m 79 X.G81 X.C104 G-C WC 19-XIX cWW cW-W 80 X.G82 X.U103 G-U -- -- tWH tW-M 81 X.G83 X.A102 G+A -- -- tSW tm+W 82 X.A84 X.G101 A-G Sheared 11-XI tHS tM-m 83 X.G85 X.C97 G-C WC 19-XIX cWW cW-W 84 X.C86 X.G96 C-G WC 19-XIX cWW cW-W 85 X.U87 X.A95 U-A WC 20-XX cWW cW-W 86 X.A106 X.A389 A-A -- -- tWH tW-M 87 X.G120 X.C129 G-C WC 19-XIX cWW cW-W 88 X.G121 X.C128 G-C WC 19-XIX cWW cW-W 89 X.G122 X.C127 G-C WC 19-XIX cWW cW-W 90 X.A130 X.U149 A-U WC 20-XX cWW cW-W 91 X.G131 X.U148 G-U Wobble 28-XXVIII cWW cW-W 92 X.C132 X.G147 C-G WC 19-XIX cWW cW-W 93 X.A133 X.U146 A-U WC 20-XX cWW cW-W 94 X.U134 X.A145 U-A WC 20-XX cWW cW-W 95 X.G135 X.C144 G-C WC 19-XIX cWW cW-W 96 X.A136 X.U143 A-U WC 20-XX cWW cW-W 97 X.G137 X.G142 G-G -- -- tWH tW-M 98 X.A150 X.A179 A-A -- -- cWW cW-W 99 X.U151 X.A178 U-A WC 20-XX cWW cW-W 100 X.C152 X.G177 C-G WC 19-XIX cWW cW-W 101 X.G153 X.C175 G-C WC 19-XIX cWW cW-W 102 X.A154 X.U174 A-U WC 20-XX cWW cW-W 103 X.U155 X.A173 U-A WC 20-XX cWW cW-W 104 X.A156 X.U172 A-U WC 20-XX cWW cW-W 105 X.U157 X.A171 U-A WC 20-XX cWW cW-W 106 X.A162 X.U167 A-U -- -- tHW tM-W 107 X.U163 X.C165 U+C -- -- cWH cW+M 108 X.A185 X.G218 A-G Imino 08-VIII cWW cW-W 109 X.C186 X.G217 C-G WC 19-XIX cWW cW-W 110 X.C187 X.G215 C-G WC 19-XIX cWW cW-W 111 X.C188 X.G214 C-G WC 19-XIX cWW cW-W 112 X.G189 X.C213 G-C WC 19-XIX cWW cW-W 113 X.G190 X.C212 G-C WC 19-XIX cWW cW-W 114 X.G190 X.A1402 G-A -- -- cSW cm-W 115 X.A191 X.C211 A-C -- -- cWW cW-W 116 X.G192 X.A210 G-A Sheared 11-XI tSH tm-M 117 X.A193 X.U209 A-U rHoogsteen 24-XXIV tHW tM-W 118 X.A194 X.A207 A+A -- 02-II tHH tM+M 119 X.C195 X.U206 C-U ~Sheared -- tHS tM-m 120 X.C195 X.A845 C-A -- -- tWH tW-M 121 X.U196 X.U205 U-U -- 16-XVI cWW cW-W 122 X.G197 X.C204 G-C WC 19-XIX cWW cW-W 123 X.G197 X.A254 G-A -- -- cSS cm-m 124 X.A198 X.G253 A-G -- -- cSW cm-W 125 X.A199 X.G876 A+G -- 10-X tWS tW+m 126 X.C201 X.G251 C-G WC 19-XIX cWW cW-W 127 X.A202 X.U2458 A+U -- -- cHS cM+m 128 X.U203 X.G253 U+G -- -- tWW tW+W 129 X.U203 X.G432 U-G -- -- cWW cW-W 130 X.C204 X.G253 C+G -- -- tSW tm+W 131 X.G208 X.U209 G+U Platform -- cSH cm+M 132 X.G218 X.A478 G+A -- -- tSW tm+W 133 X.A219 X.U477 A-U rHoogsteen 24-XXIV tHW tM-W 134 X.A220 X.U477 A-U -- -- tHW tM-W 135 X.G223 X.A236 G-A -- -- cSW cm-W 136 X.G223 X.A474 G-A -- -- tWH tW-M 137 X.A224 X.A268 A+A -- -- cWH cW+M 138 X.A224 X.U473 A-U rHoogsteen 24-XXIV tHW tM-W 139 X.A225 X.G235 A-G Sheared 11-XI tHS tM-m 140 X.A226 X.G453 A+G Linker -- tSS tm+m 141 X.G227 X.C234 G-C WC 19-XIX cWW cW-W 142 X.A228 X.U233 A-U WC 20-XX cWW cW-W 143 X.A229 X.A231 A-A -- -- cSW cm-W 144 X.A229 X.U464 A-U -- -- cWS cW-m 145 X.A230 X.G456 A+G -- -- tWS tW+m 146 X.A236 X.A475 A+A -- 01-I tWW tW+W 147 X.U237 X.A476 U+A rWC 21-XXI tWW tW+W 148 X.U238 X.A265 U-A WC 20-XX cWW cW-W 149 X.C239 X.G264 C-G WC 19-XIX cWW cW-W 150 X.C240 X.G263 C-G WC 19-XIX cWW cW-W 151 X.C241 X.G262 C-G WC 19-XIX cWW cW-W 152 X.C241 X.A651 C-A -- -- cSS cm-m 153 X.U242 X.C261 U-C -- -- tWH tW-M 154 X.U243 X.A260 U-A -- -- t.H t.-M 155 X.A244 X.A259 A+A -- 02-II tHH tM+M 156 X.G245 X.U246 G+U Platform -- cSH cm+M 157 X.U246 X.A258 U-A rHoogsteen 24-XXIV tWH tW-M 158 X.A247 X.G257 A-G Sheared 11-XI tHS tM-m 159 X.G248 X.C256 G-C WC 19-XIX cWW cW-W 160 X.C249 X.G255 C-G WC 19-XIX cWW cW-W 161 X.G250 X.A254 G-A Sheared 11-XI tSH tm-M 162 X.G263 X.A652 G+A Linker -- tSS tm+m 163 X.A266 X.A475 A-A -- -- cSS cm-m 164 X.G269 X.C323 G+C -- -- tSW tm+W 165 X.G269 X.C472 G-C WC 19-XIX cWW cW-W 166 X.C270 X.G471 C-G WC 19-XIX cWW cW-W 167 X.C271 X.G470 C-G WC 19-XIX cWW cW-W 168 X.C272 X.G416 C-G ~Wobble -- cWW cW-W 169 X.A273 X.U298 A-U rHoogsteen 24-XXIV tHW tM-W 170 X.A273 X.U299 A-U -- -- tWH tW-M 171 X.A274 X.G297 A-G Sheared 11-XI tHS tM-m 172 X.A275 X.G296 A-G Sheared 11-XI tHS tM-m 173 X.A275 X.G304 A+G Linker -- tWS tW+m 174 X.C276 X.G295 C-G WC 19-XIX cWW cW-W 175 X.C277 X.G294 C-G WC 19-XIX cWW cW-W 176 X.A278 X.U293 A-U WC 20-XX cWW cW-W 177 X.A279 X.U292 A-U WC 20-XX cWW cW-W 178 X.C280 X.G291 C-G WC 19-XIX cWW cW-W 179 X.A281 X.U289 A-U -- -- cWW cW-W 180 X.A282 X.U289 A-U WC 20-XX cWW cW-W 181 X.G283 X.G287 G-G -- -- tWH tW-M 182 X.G283 X.C288 G-C WC 19-XIX cWW cW-W 183 X.U299 X.U415 U+U -- -- tWW tW+W 184 X.G300 X.C450 G-C WC 19-XIX cWW cW-W 185 X.G303 X.C414 G-C WC 19-XIX cWW cW-W 186 X.G304 X.C413 G-C WC 19-XIX cWW cW-W 187 X.A305 X.G410 A-G -- -- tHW tM-W 188 X.A305 X.U412 A-U WC 20-XX cWW cW-W 189 X.C306 X.G409 C-G WC 19-XIX cWW cW-W 190 X.A307 X.U408 A-U WC 20-XX cWW cW-W 191 X.C308 X.G407 C-G WC 19-XIX cWW cW-W 192 X.U309 X.A406 U-A WC 20-XX cWW cW-W 193 X.C310 X.G405 C-G WC 19-XIX cWW cW-W 194 X.U311 X.U404 U-U -- -- cWW cW-W 195 X.A318 X.U401 A-U -- -- cW. cW-. 196 X.U321 X.G327 U-G -- -- cWW cW-W 197 X.A325 X.U401 A-U -- -- cW. cW-. 198 X.A329 X.C398 A-C -- -- cWW cW-W 199 X.C330 X.G396 C-G -- -- cWW cW-W 200 X.C330 X.U397 C-U -- 18-XVIII cWW cW-W 201 X.G331 X.U395 G-U Wobble 28-XXVIII cWW cW-W 202 X.A332 X.U394 A-U WC 20-XX cWW cW-W 203 X.C333 X.G393 C-G WC 19-XIX cWW cW-W 204 X.A334 X.U392 A-U WC 20-XX cWW cW-W 205 X.U335 X.A391 U-A WC 20-XX cWW cW-W 206 X.U336 X.A390 U-A WC 20-XX cWW cW-W 207 X.A337 X.G387 A-G -- -- tHS tM-m 208 X.G338 X.C386 G-C WC 19-XIX cWW cW-W 209 X.A339 X.U385 A-U WC 20-XX cWW cW-W 210 X.C340 X.G384 C-G WC 19-XIX cWW cW-W 211 X.G341 X.A383 G-A Sheared 11-XI tSH tm-M 212 X.A342 X.G381 A-G -- -- cHW cM-W 213 X.A343 X.G381 A-G -- -- -- -- 214 X.U344 X.A359 U-A WC 20-XX cWW cW-W 215 X.C345 X.G358 C-G WC 19-XIX cWW cW-W 216 X.A346 X.U357 A-U WC 20-XX cWW cW-W 217 X.U347 X.A356 U-A WC 20-XX cWW cW-W 218 X.C348 X.G355 C-G WC 19-XIX cWW cW-W 219 X.U349 X.A353 U-A rHoogsteen 24-XXIV tWH tW-M 220 X.G351 X.A372 G+A Linker -- tSS tm+m 221 X.A352 X.U1248 A+U -- -- tWW tW+W 222 X.A360 X.U377 A-U WC 20-XX cWW cW-W 223 X.U361 X.A376 U-A WC 20-XX cWW cW-W 224 X.C362 X.G366 C-G WC 19-XIX cWW cW-W 225 X.A365 X.U382 A-U -- -- cSW cm-W 226 X.A367 X.G381 A-G Sheared 11-XI tHS tM-m 227 X.A368 X.U380 A-U WC 20-XX cWW cW-W 228 X.G369 X.C379 G-C WC 19-XIX cWW cW-W 229 X.G370 X.C378 G-C WC 19-XIX cWW cW-W 230 X.U371 X.A375 U-A rHoogsteen 24-XXIV tWH tW-M 231 X.A388 X.A389 A-A Platform -- cSW cm-W 232 X.G418 X.U419 G+U Platform -- cSH cm+M 233 X.U419 X.A447 U-A rHoogsteen 24-XXIV tWH tW-M 234 X.A420 X.G446 A-G Sheared 11-XI tHS tM-m 235 X.C421 X.G445 C-G WC 19-XIX cWW cW-W 236 X.G422 X.C444 G-C WC 19-XIX cWW cW-W 237 X.A423 X.U443 A-U WC 20-XX cWW cW-W 238 X.C424 X.G442 C-G WC 19-XIX cWW cW-W 239 X.G425 X.C441 G-C WC 19-XIX cWW cW-W 240 X.G426 X.C440 G-C WC 19-XIX cWW cW-W 241 X.A427 X.U439 A-U WC 20-XX cWW cW-W 242 X.G428 X.U438 G-U -- -- cWW cW-W 243 X.C429 X.G434 C+G -- -- t.W t.+W 244 X.C429 X.A437 C-A -- -- cWH cW-M 245 X.C429 X.U438 C-U -- -- cWW cW-W 246 X.C431 X.G457 C-G WC 19-XIX cWW cW-W 247 X.A436 X.G457 A-G -- -- cSS cm-m 248 X.A447 X.A468 A+A -- -- c.W c.+W 249 X.A448 X.A469 A+A -- -- cWW cW+W 250 X.G452 X.U467 G-U Wobble 28-XXVIII cWW cW-W 251 X.G453 X.C466 G-C WC 19-XIX cWW cW-W 252 X.G454 X.C465 G-C WC 19-XIX cWW cW-W 253 X.A455 X.U464 A-U WC 20-XX cWW cW-W 254 X.G456 X.C463 G-C WC 19-XIX cWW cW-W 255 X.A458 X.A2438 A-A ~Sheared -- tHS tM-m 256 X.C459 X.G2437 C-G WC 19-XIX cWW cW-W 257 X.C460 X.G2436 C-G WC 19-XIX cWW cW-W 258 X.A461 X.U2435 A-U WC 20-XX cWW cW-W 259 X.U462 X.A2434 U-A WC 20-XX cWW cW-W 260 X.U480 X.C481 U+C Platform -- cSH cm+M 261 X.U487 X.A658 U+A -- -- cSH cm+M 262 X.A489 X.G1283 A+G Linker -- tSS tm+m 263 X.G492 X.A500 G+A -- 10-X tSW tm+W 264 X.U494 X.G625 U+G -- -- tWW tW+W 265 X.U494 X.G626 U+G -- -- tWS tW+m 266 X.A495 X.A500 A-A -- 05-V tWH tW-M 267 X.A503 X.A517 A-A ~rHoogsteen -- tWH tW-M 268 X.G504 X.U505 G+U Platform -- cSH cm+M 269 X.U505 X.A516 U-A rHoogsteen 24-XXIV tWH tW-M 270 X.A506 X.G515 A-G -- -- tWH tW-M 271 X.C507 X.G514 C-G WC 19-XIX cWW cW-W 272 X.C508 X.G513 C-G WC 19-XIX cWW cW-W 273 X.G509 X.A512 G-A Sheared 11-XI tSH tm-M 274 X.G511 X.U728 G-U -- -- cSS cm-m 275 X.A512 X.G727 A-G -- -- cSS cm-m 276 X.U521 X.A525 U-A rHoogsteen 24-XXIV tWH tW-M 277 X.U521 X.A550 U-A -- -- cSW cm-W 278 X.G522 X.A526 G-A Sheared 11-XI tSH tm-M 279 X.A523 X.A546 A+A -- 02-II tHH tM+M 280 X.A524 X.A547 A+A -- -- tHH tM+M 281 X.A525 X.A548 A+A -- 01-I tWW tW+W 282 X.A526 X.A550 A+A -- 01-I tWW tW+W 283 X.G527 X.G551 G+G -- 04-IV tSS tm+m 284 X.G527 X.C554 G-C WC 19-XIX cWW cW-W 285 X.C528 X.A542 C-A -- -- cSW cm-W 286 X.A529 X.A542 A-A ~Sheared -- tHS tM-m 287 X.C530 X.G541 C-G WC 19-XIX cWW cW-W 288 X.C531 X.G540 C-G WC 19-XIX cWW cW-W 289 X.C532 X.G539 C-G WC 19-XIX cWW cW-W 290 X.C533 X.G538 C-G WC 19-XIX cWW cW-W 291 X.G534 X.A537 G-A Sheared 11-XI tSH tm-M 292 X.G543 X.G551 G-G -- -- tWH tW-M 293 X.U544 X.A548 U-A rHoogsteen 24-XXIV tWH tW-M 294 X.G545 X.A550 G-A Sheared 11-XI tSH tm-M 295 X.A559 X.C624 A-C -- -- cSS cm-m 296 X.A560 X.G1298 A+G Linker -- tSS tm+m 297 X.A571 X.G2652 A+G Linker -- t.S t.+m 298 X.A574 X.U2068 A-U rHoogsteen 24-XXIV tHW tM-W 299 X.U576 X.A2045 U-A WC 20-XX cWW cW-W 300 X.A577 X.U2046 A-U -- -- cWW cW-W 301 X.A577 X.A2047 A-A -- -- cWS cW-m 302 X.A577 X.G2062 A+G -- -- cW. cW+. 303 X.G578 X.C603 G-C WC 19-XIX cWW cW-W 304 X.U579 X.G602 U-G Wobble 28-XXVIII cWW cW-W 305 X.C580 X.G601 C-G WC 19-XIX cWW cW-W 306 X.A581 X.U600 A-U WC 20-XX cWW cW-W 307 X.G582 X.A599 G-A Sheared 11-XI tSH tm-M 308 X.A583 X.G598 A-G Sheared 11-XI tHS tM-m 309 X.G584 X.U597 G-U Wobble 28-XXVIII cWW cW-W 310 X.C585 X.G596 C-G WC 19-XIX cWW cW-W 311 X.C586 X.G595 C-G WC 19-XIX cWW cW-W 312 X.C587 X.G594 C-G WC 19-XIX cWW cW-W 313 X.G588 X.U589 G+U Platform -- cSH cm+M 314 X.U589 X.A592 U+A Hoogsteen 23-XXIII cWH cW+M 315 X.U590 X.A1267 U-A WC 20-XX cWW cW-W 316 X.G594 X.A1258 G-A -- -- cSW cm-W 317 X.U605 X.A2060 U-A WC 20-XX cWW cW-W 318 X.G606 X.A621 G-A Imino 08-VIII cWW cW-W 319 X.C607 X.G620 C-G WC 19-XIX cWW cW-W 320 X.C608 X.U619 C-U -- 18-XVIII cWW cW-W 321 X.U609 X.A618 U-A WC 20-XX cWW cW-W 322 X.U611 X.A2057 U-A -- -- t.H t.-M 323 X.U612 X.A1027 U-A -- -- cSW cm-W 324 X.A615 X.G2056 A+G -- 10-X tWS tW+m 325 X.G620 X.A1291 G-A -- -- cSS cm-m 326 X.A622 X.U1299 A-U WC 20-XX cWW cW-W 327 X.C623 X.G1298 C-G WC 19-XIX cWW cW-W 328 X.C624 X.G1297 C-G WC 19-XIX cWW cW-W 329 X.G625 X.C1296 G-C WC 19-XIX cWW cW-W 330 X.G626 X.C1295 G-C WC 19-XIX cWW cW-W 331 X.C627 X.G1294 C-G WC 19-XIX cWW cW-W 332 X.G628 X.A1292 G-A Sheared 11-XI tSH tm-M 333 X.A629 X.C717 A-C -- -- cSS cm-m 334 X.A629 X.G854 A+G Linker -- t.S t.+m 335 X.A629 X.A1289 A-A ~rHoogsteen -- tHW tM-W 336 X.G630 X.U855 G-U Wobble 28-XXVIII cWW cW-W 337 X.U631 X.A715 U+A -- -- tWS tW+m 338 X.U632 X.A713 U-A WC 20-XX cWW cW-W 339 X.A633 X.U712 A-U WC 20-XX cWW cW-W 340 X.C634 X.G711 C-G WC 19-XIX cWW cW-W 341 X.G635 X.C710 G-C WC 19-XIX cWW cW-W 342 X.A636 X.U709 A-U WC 20-XX cWW cW-W 343 X.U637 X.G708 U-G Wobble 28-XXVIII cWW cW-W 344 X.U638 X.G707 U-G Wobble 28-XXVIII cWW cW-W 345 X.U639 X.U706 U-U -- -- cWW cW-W 346 X.G640 X.U705 G-U Wobble 28-XXVIII cWW cW-W 347 X.A641 X.U704 A-U WC 20-XX cWW cW-W 348 X.U642 X.A703 U-A WC 20-XX cWW cW-W 349 X.G643 X.U702 G-U Wobble 28-XXVIII cWW cW-W 350 X.C644 X.G701 C-G WC 19-XIX cWW cW-W 351 X.G647 X.C669 G-C WC 19-XIX cWW cW-W 352 X.G648 X.C668 G-C WC 19-XIX cWW cW-W 353 X.U649 X.G667 U-G Wobble 28-XXVIII cWW cW-W 354 X.U650 X.A666 U+A -- -- tWW tW+W 355 X.A652 X.G664 A-G Sheared 11-XI tHS tM-m 356 X.G653 X.U663 G-U Wobble 28-XXVIII cWW cW-W 357 X.C654 X.G662 C-G WC 19-XIX cWW cW-W 358 X.A655 X.U661 A-U WC 20-XX cWW cW-W 359 X.G656 X.A659 G+A Linker -- tSS tm+m 360 X.G656 X.U661 G-U -- -- cSW cm-W 361 X.G673 X.C680 G-C WC 19-XIX cWW cW-W 362 X.C674 X.G679 C-G WC 19-XIX cWW cW-W 363 X.G675 X.A678 G-A Sheared 11-XI tSH tm-M 364 X.A676 X.G2442 A-G -- -- cWS cW-m 365 X.U684 X.G694 U-G Wobble 28-XXVIII cWW cW-W 366 X.C685 X.G693 C-G WC 19-XIX cWW cW-W 367 X.U686 X.G692 U-G Wobble 28-XXVIII cWW cW-W 368 X.A688 X.A2396 A-A -- -- cWS cW-m 369 X.A689 X.G2376 A+G -- -- tWS tW+m 370 X.C716 X.G854 C-G WC 19-XIX cWW cW-W 371 X.C717 X.G853 C-G WC 19-XIX cWW cW-W 372 X.C718 X.U852 C-U -- -- cWW cW-W 373 X.G719 X.C851 G-C WC 19-XIX cWW cW-W 374 X.A720 X.U848 A-U rHoogsteen 24-XXIV tHW tM-W 375 X.A720 X.C2470 A-C -- -- cWS cW-m 376 X.A721 X.A847 A+A -- -- tWW tW+W 377 X.A721 X.G2096 A-G -- -- tHS tM-m 378 X.A722 X.A845 A+A -- 01-I tWW tW+W 379 X.C723 X.G844 C-G WC 19-XIX cWW cW-W 380 X.C724 X.G843 C-G WC 19-XIX cWW cW-W 381 X.A725 X.U842 A-U WC 20-XX cWW cW-W 382 X.G726 X.C841 G-C WC 19-XIX cWW cW-W 383 X.G727 X.C840 G-C WC 19-XIX cWW cW-W 384 X.U728 X.A839 U-A WC 20-XX cWW cW-W 385 X.G729 X.G820 G-G -- 07-VII tWH tW-M 386 X.A730 X.U733 A+U -- -- tSW tm+W 387 X.A730 X.G823 A+G -- 10-X tWS tW+m 388 X.C732 X.A1807 C-A -- -- cSW cm-W 389 X.A734 X.U818 A-U WC 20-XX cWW cW-W 390 X.C735 X.G817 C-G WC 19-XIX cWW cW-W 391 X.C736 X.G816 C-G WC 19-XIX cWW cW-W 392 X.C737 X.G815 C-G WC 19-XIX cWW cW-W 393 X.U738 X.A814 U-A WC 20-XX cWW cW-W 394 X.U739 X.G813 U-G Wobble 28-XXVIII cWW cW-W 395 X.G740 X.U812 G-U Wobble 28-XXVIII cWW cW-W 396 X.G741 X.C811 G-C WC 19-XIX cWW cW-W 397 X.U742 X.A810 U-A WC 20-XX cWW cW-W 398 X.C743 X.G808 C-G WC 19-XIX cWW cW-W 399 X.A744 X.G778 A-G Sheared 11-XI tHS tM-m 400 X.A744 X.G1677 A-G -- -- cWS cW-m 401 X.G745 X.C777 G-C WC 19-XIX cWW cW-W 402 X.G746 X.C776 G-C WC 19-XIX cWW cW-W 403 X.U747 X.A775 U-A WC 20-XX cWW cW-W 404 X.U748 X.G773 U-G Wobble 28-XXVIII cWW cW-W 405 X.G749 X.A772 G-A Sheared 11-XI tSH tm-M 406 X.A750 X.G771 A-G Sheared 11-XI tHS tM-m 407 X.A751 X.G770 A-G Sheared 11-XI tHS tM-m 408 X.G752 X.U769 G-U Wobble 28-XXVIII cWW cW-W 409 X.U753 X.A768 U-A WC 20-XX cWW cW-W 410 X.U754 X.A767 U-A WC 20-XX cWW cW-W 411 X.C755 X.G766 C-G WC 19-XIX cWW cW-W 412 X.A756 X.U765 A-U WC 20-XX cWW cW-W 413 X.G757 X.C764 G-C -- -- cWW cW-W 414 X.G758 X.C764 G-C -- -- cWW cW-W 415 X.G774 X.C1801 G-C WC 19-XIX cWW cW-W 416 X.A780 X.A806 A-A ~Sheared -- tHS tM-m 417 X.C781 X.G805 C-G WC 19-XIX cWW cW-W 418 X.C782 X.G804 C-G WC 19-XIX cWW cW-W 419 X.G783 X.C803 G-C WC 19-XIX cWW cW-W 420 X.G783 X.A2008 G+A -- -- t.W t.+W 421 X.A784 X.C785 A+C Platform -- cSH cm+M 422 X.C785 X.G802 C-G WC 19-XIX cWW cW-W 423 X.U786 X.A801 U-A WC 20-XX cWW cW-W 424 X.U787 X.G800 U-G Wobble 28-XXVIII cWW cW-W 425 X.A788 X.U799 A-U WC 20-XX cWW cW-W 426 X.C789 X.G798 C-G WC 19-XIX cWW cW-W 427 X.G790 X.A795 G+A -- 10-X tSW tm+W 428 X.U792 X.A2041 U-A -- -- cWS cW-m 429 X.A794 X.G798 A-G -- -- cWS cW-m 430 X.A797 X.U2636 A-U WC 20-XX cWW cW-W 431 X.C803 X.A2008 C-A -- -- cSS cm-m 432 X.A809 X.U1802 A+U Hoogsteen 23-XXIII cHW cM+W 433 X.G815 X.A1391 G+A Linker -- tSS tm+m 434 X.A819 X.G822 A-G -- -- cSS cm-m 435 X.A819 X.C832 A+C -- -- tWS tW+m 436 X.G820 X.C836 G-C WC 19-XIX cWW cW-W 437 X.G822 X.C832 G-C WC 19-XIX cWW cW-W 438 X.G823 X.C831 G-C WC 19-XIX cWW cW-W 439 X.A824 X.U830 A-U WC 20-XX cWW cW-W 440 X.G825 X.A828 G+A -- 10-X tSW tm+W 441 X.A826 X.G1803 A+G Linker -- tSS tm+m 442 X.U829 X.A838 U-A WC 20-XX cWW cW-W 443 X.G837 X.G2099 G-G -- -- cSS cm-m 444 X.U852 X.A2087 U-A -- -- cSW cm-W 445 X.G853 X.A1292 G-A -- -- cSS cm-m 446 X.C857 X.G1234 C-G WC 19-XIX cWW cW-W 447 X.U858 X.A1233 U-A WC 20-XX cWW cW-W 448 X.C859 X.G1232 C-G WC 19-XIX cWW cW-W 449 X.U860 X.A1231 U-A WC 20-XX cWW cW-W 450 X.C861 X.G1230 C-G WC 19-XIX cWW cW-W 451 X.C862 X.G1229 C-G WC 19-XIX cWW cW-W 452 X.G863 X.A1228 G-A Sheared 11-XI tSH tm-M 453 X.A864 X.G986 A+G Linker -- tSS tm+m 454 X.A864 X.U1227 A-U rHoogsteen 24-XXIV tHW tM-W 455 X.A865 X.A1017 A+A -- 02-II tHH tM+M 456 X.A866 X.G1016 A-G Sheared 11-XI tHS tM-m 457 X.U867 X.A880 U-A WC 20-XX cWW cW-W 458 X.A868 X.U879 A-U WC 20-XX cWW cW-W 459 X.A868 X.C988 A+C -- -- cHW cM+W 460 X.G869 X.C878 G-C WC 19-XIX cWW cW-W 461 X.C870 X.G877 C-G WC 19-XIX cWW cW-W 462 X.U871 X.G876 U-G Wobble 28-XXVIII cWW cW-W 463 X.U879 X.C988 U-C -- -- t.W t.-W 464 X.G881 X.U987 G-U Wobble 28-XXVIII cWW cW-W 465 X.C882 X.G986 C-G WC 19-XIX cWW cW-W 466 X.C883 X.G984 C-G WC 19-XIX cWW cW-W 467 X.U884 X.G983 U-G Wobble 28-XXVIII cWW cW-W 468 X.C885 X.G982 C-G WC 19-XIX cWW cW-W 469 X.A886 X.U981 A-U WC 20-XX cWW cW-W 470 X.A887 X.U980 A-U WC 20-XX cWW cW-W 471 X.G888 X.C979 G-C WC 19-XIX cWW cW-W 472 X.U889 X.A978 U-A WC 20-XX cWW cW-W 473 X.U892 X.A977 U+A Hoogsteen 23-XXIII cHW cM+W 474 X.G893 X.U975 G-U Wobble 28-XXVIII cWW cW-W 475 X.A894 X.U974 A-U WC 20-XX cWW cW-W 476 X.U895 X.A973 U-A WC 20-XX cWW cW-W 477 X.U896 X.A972 U-A WC 20-XX cWW cW-W 478 X.A897 X.U971 A-U WC 20-XX cWW cW-W 479 X.U898 X.A969 U-A WC 20-XX cWW cW-W 480 X.U899 X.A968 U-A WC 20-XX cWW cW-W 481 X.G900 X.C967 G-C WC 19-XIX cWW cW-W 482 X.G901 X.C966 G-C WC 19-XIX cWW cW-W 483 X.A902 X.G965 A-G Imino 08-VIII cWW cW-W 484 X.G903 X.U964 G-U -- -- cW. cW-. 485 X.G904 X.U905 G+U Platform -- cSH cm+M 486 X.U905 X.A962 U-A rHoogsteen 24-XXIV tWH tW-M 487 X.A906 X.G961 A-G Sheared 11-XI tHS tM-m 488 X.G907 X.C960 G-C WC 19-XIX cWW cW-W 489 X.G907 Y.G96 G+G -- -- tSS tm+m 490 X.A908 X.U958 A-U WC 20-XX cWW cW-W 491 X.G909 X.A911 G+A -- -- tSH tm+M 492 X.G909 X.C957 G-C WC 19-XIX cWW cW-W 493 X.C910 X.C912 C+C -- -- cSH cm+M 494 X.C910 X.A954 C-A ~rHoogsteen 25-XXV tWH tW-M 495 X.C912 X.C957 C-C -- -- cWS cW-m 496 X.U913 X.A954 U-A WC 20-XX cWW cW-W 497 X.G914 X.C953 G-C WC 19-XIX cWW cW-W 498 X.U915 X.A952 U-A WC 20-XX cWW cW-W 499 X.U916 X.G951 U-G Wobble 28-XXVIII cWW cW-W 500 X.U917 X.A950 U-A WC 20-XX cWW cW-W 501 X.G918 X.C949 G-C WC 19-XIX cWW cW-W 502 X.G919 X.U948 G-U Wobble 28-XXVIII cWW cW-W 503 X.A920 X.U947 A-U WC 20-XX cWW cW-W 504 X.G922 X.G944 G-G -- -- cWW cW-W 505 X.G924 X.G925 G+G Platform -- cSH cm+M 506 X.G924 X.C942 G-C -- -- tW. tW-. 507 X.G925 X.C942 G-C WC 19-XIX cWW cW-W 508 X.A956 X.G2304 A+G Linker -- tWS tW+m 509 X.U958 X.C959 U+C Platform -- cSH cm+M 510 X.A963 X.A2295 A+A -- 02-II tHH tM+M 511 X.G990 X.C1015 G-C WC 19-XIX cWW cW-W 512 X.A991 X.U1014 A-U WC 20-XX cWW cW-W 513 X.A991 X.G1028 A-G -- -- tSH tm-M 514 X.A992 X.U1013 A-U WC 20-XX cWW cW-W 515 X.C993 X.G1012 C-G WC 19-XIX cWW cW-W 516 X.A994 X.U1011 A-U WC 20-XX cWW cW-W 517 X.U995 X.G1010 U-G Wobble 28-XXVIII cWW cW-W 518 X.G996 X.C1009 G-C WC 19-XIX cWW cW-W 519 X.G996 X.A2294 G+A -- -- cSH cm+M 520 X.G997 X.C1008 G-C WC 19-XIX cWW cW-W 521 X.G997 X.A2300 G+A -- -- t.W t.+W 522 X.G998 X.U1007 G-U Wobble 28-XXVIII cWW cW-W 523 X.G998 X.A2301 G+A Linker -- tS. tm+. 524 X.U999 X.G1006 U-G Wobble 28-XXVIII cWW cW-W 525 X.G1000 X.A1004 G-A Sheared 11-XI tSH tm-M 526 X.A1003 X.U2484 A-U -- -- cSS cm-m 527 X.A1004 X.G2522 A+G Linker -- tSS tm+m 528 X.G1006 X.G2277 G+G -- -- cSH cm+M 529 X.C1015 X.A1027 C-A -- -- cSW cm-W 530 X.A1018 X.A1034 A-A ~Sheared -- tSH tm-M 531 X.A1019 X.A1032 A-A -- -- tH. tM-. 532 X.A1019 X.G1033 A-G Sheared 11-XI tHS tM-m 533 X.A1019 X.A1200 A+A -- -- tSS tm+m 534 X.G1020 X.C1031 G-C WC 19-XIX cWW cW-W 535 X.G1021 X.C1030 G-C WC 19-XIX cWW cW-W 536 X.G1021 X.A1045 G+A Linker -- tSS tm+m 537 X.G1022 X.C1029 G-C WC 19-XIX cWW cW-W 538 X.A1025 X.G2054 A+G Linker -- tWS tW+m 539 X.C1035 X.G1207 C-G WC 19-XIX cWW cW-W 540 X.C1036 X.G1206 C-G WC 19-XIX cWW cW-W 541 X.A1037 X.U1205 A-U WC 20-XX cWW cW-W 542 X.C1038 X.G1204 C-G WC 19-XIX cWW cW-W 543 X.A1040 X.U1203 A-U WC 20-XX cWW cW-W 544 X.G1041 X.C1202 G-C WC 19-XIX cWW cW-W 545 X.C1042 X.G1201 C-G WC 19-XIX cWW cW-W 546 X.U1043 X.A1199 U-A rHoogsteen 24-XXIV tWH tW-M 547 X.A1045 X.G1198 A-G Sheared 11-XI tHS tM-m 548 X.G1046 X.A1053 G+A -- -- tWW tW+W 549 X.G1046 X.C1197 G-C WC 19-XIX cWW cW-W 550 X.G1047 X.A1054 G+A Linker -- tSS tm+m 551 X.G1047 X.C1196 G-C WC 19-XIX cWW cW-W 552 X.U1048 X.A1195 U-A WC 20-XX cWW cW-W 553 X.C1049 X.G1182 C-G WC 19-XIX cWW cW-W 554 X.C1050 X.G1181 C-G WC 19-XIX cWW cW-W 555 X.C1051 X.G1180 C+G ~Hoogsteen -- cWH cW+M 556 X.A1052 X.A1053 A+A Platform -- cSH cm+M 557 X.A1055 X.U1194 A-U WC 20-XX cWW cW-W 558 X.U1056 X.A1187 U+A Hoogsteen 23-XXIII cWH cW+M 559 X.A1057 X.U1193 A-U WC 20-XX cWW cW-W 560 X.U1058 X.A1192 U-A WC 20-XX cWW cW-W 561 X.A1059 X.U1191 A-U WC 20-XX cWW cW-W 562 X.U1060 X.A1190 U-A WC 20-XX cWW cW-W 563 X.G1061 X.C1189 G-C WC 19-XIX cWW cW-W 564 X.U1062 X.A1188 U-A WC 20-XX cWW cW-W 565 X.U1063 X.A1065 U-A -- -- cSW cm-W 566 X.U1063 X.A1186 U-A rHoogsteen 24-XXIV tWH tW-M 567 X.A1065 X.U1185 A-U -- -- tHW tM-W 568 X.G1066 X.U1067 G+U Platform -- cSH cm+M 569 X.G1066 X.A1186 G+A -- -- tWW tW+W 570 X.U1067 X.A1186 U+A -- -- t.W t.+W 571 X.G1068 X.C1184 G-C WC 19-XIX cWW cW-W 572 X.G1069 X.G1183 G+G -- 03-III tWW tW+W 573 X.A1072 X.A1170 A+A -- 02-II tHH tM+M 574 X.A1072 X.G2513 A-G -- -- cWS cW-m 575 X.A1073 X.G1169 A-G Sheared 11-XI tHS tM-m 576 X.A1073 X.C2492 A+C -- -- tWS tW+m 577 X.A1073 X.G2512 A-G -- -- cSS cm-m 578 X.G1074 X.C1168 G-C WC 19-XIX cWW cW-W 579 X.G1075 X.C1167 G-C WC 19-XIX cWW cW-W 580 X.A1076 X.G1166 A-G -- -- cWW cW-W 581 X.G1078 X.C1165 G-C WC 19-XIX cWW cW-W 582 X.U1079 X.G1164 U-G Wobble 28-XXVIII cWW cW-W 583 X.G1080 X.U1163 G-U Wobble 28-XXVIII cWW cW-W 584 X.G1081 X.C1162 G-C WC 19-XIX cWW cW-W 585 X.C1082 X.A1161 C-A -- -- cWW cW-W 586 X.G1083 X.C1160 G-C WC 19-XIX cWW cW-W 587 X.U1084 X.A1159 U-A WC 20-XX cWW cW-W 588 X.U1085 X.G1158 U-G Wobble 28-XXVIII cWW cW-W 589 X.G1086 X.U1157 G-U Wobble 28-XXVIII cWW cW-W 590 X.C1087 X.G1156 C-G WC 19-XIX cWW cW-W 591 X.A1092 X.A1155 A-A -- -- tHW tM-W 592 X.C1093 X.G2778 C-G WC 19-XIX cWW cW-W 593 X.A1094 X.C1153 A-C -- -- cWW cW-W 594 X.A1095 X.U1152 A-U WC 20-XX cWW cW-W 595 X.C1096 X.G1151 C-G WC 19-XIX cWW cW-W 596 X.U1097 X.G1151 U-G -- -- cWW cW-W 597 X.G1099 X.C1148 G-C WC 19-XIX cWW cW-W 598 X.A1171 X.C2490 A-C -- -- cWS cW-m 599 X.A1171 X.A2515 A+A -- -- cHS cM+m 600 X.A1173 X.G2596 A+G Linker -- tSS tm+m 601 X.G1175 X.U1176 G+U Platform -- cSH cm+M 602 X.A1177 X.C2052 A+C -- -- tWS tW+m 603 X.A1177 X.G2065 A-G -- -- cW. cW-. 604 X.C1179 X.G1182 C-G -- -- tWH tW-M 605 X.G1183 X.A1187 G+A Linker -- tSW tm+W 606 X.A1208 X.U1224 A-U WC 20-XX cWW cW-W 607 X.U1209 X.A1223 U-A WC 20-XX cWW cW-W 608 X.U1210 X.A1222 U-A WC 20-XX cWW cW-W 609 X.G1211 X.C1221 G-C WC 19-XIX cWW cW-W 610 X.U1212 X.A1220 U-A WC 20-XX cWW cW-W 611 X.C1213 X.G1219 C-G WC 19-XIX cWW cW-W 612 X.C1214 X.G1218 C-G WC 19-XIX cWW cW-W 613 X.G1226 X.U1227 G+U Platform -- cSH cm+M 614 X.G1234 X.A1264 G+A Linker -- tSS tm+m 615 X.C1235 X.G1288 C-G WC 19-XIX cWW cW-W 616 X.G1236 X.U1287 G-U -- -- cWW cW-W 617 X.U1237 X.A1285 U-A WC 20-XX cWW cW-W 618 X.U1238 X.A1284 U-A WC 20-XX cWW cW-W 619 X.C1239 X.G1283 C-G WC 19-XIX cWW cW-W 620 X.U1240 X.A1282 U-A WC 20-XX cWW cW-W 621 X.A1241 X.U1281 A-U WC 20-XX cWW cW-W 622 X.A1242 X.U1280 A-U WC 20-XX cWW cW-W 623 X.G1243 X.C1279 G-C WC 19-XIX cWW cW-W 624 X.G1244 X.G1278 G+G -- 06-VI cWH cW+M 625 X.G1245 X.C1277 G-C WC 19-XIX cWW cW-W 626 X.C1246 X.G1276 C-G WC 19-XIX cWW cW-W 627 X.G1247 X.A1275 G+A Linker -- tSW tm+W 628 X.G1250 X.A1275 G-A Sheared 11-XI tSH tm-M 629 X.A1251 X.G1274 A-G Sheared 11-XI tHS tM-m 630 X.A1252 X.G1273 A-G Sheared 11-XI tHS tM-m 631 X.G1253 X.U1272 G-U Wobble 28-XXVIII cWW cW-W 632 X.C1254 X.G1271 C-G WC 19-XIX cWW cW-W 633 X.A1255 X.U1270 A-U WC 20-XX cWW cW-W 634 X.U1256 X.A1269 U-A WC 20-XX cWW cW-W 635 X.G1257 X.C1268 G-C WC 19-XIX cWW cW-W 636 X.U1259 X.G1266 U-G Wobble 28-XXVIII cWW cW-W 637 X.C1260 X.G1265 C-G WC 19-XIX cWW cW-W 638 X.G1261 X.A1264 G-A -- -- tWH tW-M 639 X.G1300 X.C2044 G-C WC 19-XIX cWW cW-W 640 X.U1301 X.U2043 U-U -- 16-XVI cWW cW-W 641 X.G1302 X.A2042 G-A Sheared 11-XI tSH tm-M 642 X.A1303 X.A2041 A+A -- 02-II tHH tM+M 643 X.G1304 X.U1305 G+U Platform -- cSH cm+M 644 X.U1305 X.A2040 U-A rHoogsteen 24-XXIV tWH tW-M 645 X.A1306 X.G2039 A-G Sheared 11-XI tHS tM-m 646 X.G1307 X.C1362 G+C -- -- tSW tm+W 647 X.G1307 X.U2038 G-U Wobble 28-XXVIII cWW cW-W 648 X.C1308 X.G2037 C-G WC 19-XIX cWW cW-W 649 X.G1309 X.C1659 G+C rWC 22-XXII tWW tW+W 650 X.A1312 X.G1689 A-G -- -- cSS cm-m 651 X.G1313 X.C1331 G-C WC 19-XIX cWW cW-W 652 X.A1314 X.U1330 A-U WC 20-XX cWW cW-W 653 X.C1315 X.G1329 C-G WC 19-XIX cWW cW-W 654 X.G1316 X.C1328 G-C WC 19-XIX cWW cW-W 655 X.G1317 X.C1327 G-C WC 19-XIX cWW cW-W 656 X.G1318 X.C1326 G-C WC 19-XIX cWW cW-W 657 X.U1319 X.A1323 U-A rHoogsteen 24-XXIV tWH tW-M 658 X.G1320 X.U1366 G-U -- -- cSW cm-W 659 X.A1324 X.C1692 A-C -- -- cWS cW-m 660 X.U1325 X.U1363 U+U -- 13-XIII tWW tW+W 661 X.U1325 X.G1691 U+G -- -- tSS tm+m 662 X.C1332 X.G1689 C-G WC 19-XIX cWW cW-W 663 X.A1333 X.U1688 A-U WC 20-XX cWW cW-W 664 X.C1334 X.G1687 C-G WC 19-XIX cWW cW-W 665 X.C1335 X.G1686 C-G WC 19-XIX cWW cW-W 666 X.G1336 X.A1685 G-A Sheared 11-XI tSH tm-M 667 X.U1338 X.A1685 U+A rWC 21-XXI tWW tW+W 668 X.G1340 X.C1669 G-C WC 19-XIX cWW cW-W 669 X.A1341 X.U1668 A-U WC 20-XX cWW cW-W 670 X.C1342 X.G1667 C-G WC 19-XIX cWW cW-W 671 X.U1343 X.A1666 U-A -- -- cWW cW-W 672 X.A1345 X.G1650 A-G Sheared 11-XI tHS tM-m 673 X.A1345 X.A1652 A+A -- 01-I tWW tW+W 674 X.G1346 X.C1649 G-C WC 19-XIX cWW cW-W 675 X.G1347 X.C1648 G-C WC 19-XIX cWW cW-W 676 X.G1347 X.A1654 G-A -- -- cSS cm-m 677 X.U1348 X.A1647 U-A -- -- t.H t.-M 678 X.U1349 X.U1377 U+U -- -- tWW tW+W 679 X.U1350 X.A1647 U-A WC 20-XX cWW cW-W 680 X.C1351 X.G1375 C-G WC 19-XIX cWW cW-W 681 X.C1352 X.G1374 C-G WC 19-XIX cWW cW-W 682 X.C1352 X.G1429 C-G -- -- cSS cm-m 683 X.A1353 X.U1373 A-U WC 20-XX cWW cW-W 684 X.G1354 X.C1372 G-C WC 19-XIX cWW cW-W 685 X.A1355 X.U1371 A-U WC 20-XX cWW cW-W 686 X.G1356 X.C1370 G-C WC 19-XIX cWW cW-W 687 X.G1357 X.C1368 G+C -- -- tHH tM+M 688 X.A1359 X.C1370 A-C -- -- cWS cW-m 689 X.G1360 X.C1368 G-C WC 19-XIX cWW cW-W 690 X.G1361 X.C1367 G-C WC 19-XIX cWW cW-W 691 X.G1361 X.A1660 G+A -- -- cSH cm+M 692 X.C1364 X.G1691 C+G -- 29-XXIX tWS tW+m 693 X.G1375 X.A1430 G+A Linker -- tSW tm+W 694 X.U1378 X.U1431 U+U -- -- cH. cM+. 695 X.A1379 X.U1646 A-U rHoogsteen 24-XXIV tHW tM-W 696 X.G1380 X.A1421 G+A Linker -- tS. tm+. 697 X.G1380 X.C1441 G-C WC 19-XIX cWW cW-W 698 X.U1381 X.A1440 U-A WC 20-XX cWW cW-W 699 X.C1382 X.G1645 C-G WC 19-XIX cWW cW-W 700 X.G1383 X.C1644 G-C WC 19-XIX cWW cW-W 701 X.G1384 X.C1643 G-C WC 19-XIX cWW cW-W 702 X.G1385 X.C1642 G-C WC 19-XIX cWW cW-W 703 X.C1387 X.G1418 C-G WC 19-XIX cWW cW-W 704 X.C1388 X.G1417 C-G WC 19-XIX cWW cW-W 705 X.U1389 X.A1415 U-A rHoogsteen 24-XXIV tWH tW-M 706 X.A1390 X.U1416 A-U WC 20-XX cWW cW-W 707 X.A1391 X.G1414 A-G Sheared 11-XI tHS tM-m 708 X.G1392 X.C1413 G-C WC 19-XIX cWW cW-W 709 X.C1393 X.G1412 C-G WC 19-XIX cWW cW-W 710 X.U1394 X.G1411 U-G Wobble 28-XXVIII cWW cW-W 711 X.A1396 X.U1409 A-U rHoogsteen 24-XXIV tHW tM-W 712 X.G1397 X.G1408 G-G -- -- tHW tM-W 713 X.G1397 X.C2241 G+C -- -- tWW tW+W 714 X.G1398 X.C1407 G-C WC 19-XIX cWW cW-W 715 X.C1399 X.G1406 C-G WC 19-XIX cWW cW-W 716 X.C1400 X.G1405 C-G WC 19-XIX cWW cW-W 717 X.C1400 X.A1836 C-A -- -- cSS cm-m 718 X.G1401 X.A1404 G-A -- -- tSH tm-M 719 X.G1406 X.A1837 G+A Linker -- tSS tm+m 720 X.G1417 X.A1617 G+A -- -- tSW tm+W 721 X.G1418 X.A1619 G+A Linker -- tSS tm+m 722 X.A1422 X.U1439 A-U WC 20-XX cWW cW-W 723 X.C1423 X.G1438 C-G WC 19-XIX cWW cW-W 724 X.A1424 X.U1437 A-U WC 20-XX cWW cW-W 725 X.G1425 X.C1436 G-C WC 19-XIX cWW cW-W 726 X.G1426 X.C1435 G-C WC 19-XIX cWW cW-W 727 X.U1427 X.A1432 U-A rHoogsteen 24-XXIV tWH tW-M 728 X.U1439 X.A1513 U+A -- -- tSW tm+W 729 X.C1442 X.G1641 C-G WC 19-XIX cWW cW-W 730 X.A1443 X.U1640 A-U WC 20-XX cWW cW-W 731 X.C1444 X.G1639 C-G WC 19-XIX cWW cW-W 732 X.C1445 X.G1638 C-G WC 19-XIX cWW cW-W 733 X.U1446 X.A1637 U-A WC 20-XX cWW cW-W 734 X.A1447 X.U1636 A-U WC 20-XX cWW cW-W 735 X.A1459 X.U1629 A-U -- -- cWW cW-W 736 X.U1460 X.A1628 U-A WC 20-XX cWW cW-W 737 X.C1461 X.G1627 C-G WC 19-XIX cWW cW-W 738 X.A1463 X.A1539 A-A -- -- cWW cW-W 739 X.G1465 X.C1624 G-C WC 19-XIX cWW cW-W 740 X.G1465 X.U1625 G-U -- -- cWW cW-W 741 X.G1466 X.C1542 G+C -- -- tSW tm+W 742 X.G1466 X.U1623 G-U Wobble 28-XXVIII cWW cW-W 743 X.G1467 X.C1622 G-C WC 19-XIX cWW cW-W 744 X.G1468 X.C1621 G-C WC 19-XIX cWW cW-W 745 X.G1469 X.G1620 G-G -- -- tSH tm-M 746 X.G1470 X.A1619 G-A Sheared 11-XI tSH tm-M 747 X.A1471 X.A1618 A+A -- 02-II tHH tM+M 748 X.G1473 X.C1611 G-C WC 19-XIX cWW cW-W 749 X.C1474 X.G1610 C-G WC 19-XIX cWW cW-W 750 X.A1475 X.C1606 A-C ~rHoogsteen 25-XXV tHW tM-W 751 X.A1475 X.U1609 A-U WC 20-XX cWW cW-W 752 X.G1476 X.C1608 G-C WC 19-XIX cWW cW-W 753 X.U1477 X.A1607 U-A -- -- cWW cW-W 754 X.G1479 X.C1604 G-C -- -- cWW cW-W 755 X.G1479 X.A1605 G-A Imino 08-VIII cWW cW-W 756 X.G1480 X.G1561 G+G -- -- tSS tm+m 757 X.G1480 X.C1604 G-C WC 19-XIX cWW cW-W 758 X.A1481 X.U1603 A-U WC 20-XX cWW cW-W 759 X.A1483 X.A1600 A-A ~Sheared -- tHS tM-m 760 X.G1484 X.G1599 G-G -- -- cWW cW-W 761 X.G1485 X.U1598 G-U Wobble 28-XXVIII cWW cW-W 762 X.G1487 X.U1597 G-U -- -- cWW cW-W 763 X.A1488 X.G1490 A-G -- -- cWW cW-W 764 X.A1488 X.C1595 A-C -- -- cWW cW-W 765 X.C1491 X.C1508 C-C -- -- cWW cW-W 766 X.U1493 X.C1506 U-C -- 18-XVIII cWW cW-W 767 X.C1495 X.G1505 C+G -- -- cHW cM+W 768 X.U1499 X.C2731 U-C -- -- cWW cW-W 769 X.G1500 X.C2730 G-C WC 19-XIX cWW cW-W 770 X.G1501 X.G2729 G-G -- -- cWW cW-W 771 X.U1510 X.G1571 U-G -- -- cWW cW-W 772 X.C1511 X.G1570 C-G ~Wobble -- cWW cW-W 773 X.A1513 X.A1567 A-A ~Sheared -- tHS tM-m 774 X.A1514 X.A1567 A-A ~Sheared -- tHS tM-m 775 X.G1515 X.U1565 G-U -- -- cWW cW-W 776 X.C1516 X.G1564 C-G WC 19-XIX cWW cW-W 777 X.A1517 X.U1563 A-U WC 20-XX cWW cW-W 778 X.G1518 X.C1562 G-C WC 19-XIX cWW cW-W 779 X.U1519 X.A1521 U+A -- -- cWH cW+M 780 X.A1521 X.A1560 A-A -- -- tWS tW-m 781 X.G1522 X.U1558 G-U -- -- cWW cW-W 782 X.G1523 X.C1557 G-C WC 19-XIX cWW cW-W 783 X.C1524 X.G1556 C-G WC 19-XIX cWW cW-W 784 X.C1524 X.C1557 C-C -- -- cWW cW-W 785 X.G1526 X.G1550 G-G -- -- cWW cW-W 786 X.G1528 X.C1547 G-C WC 19-XIX cWW cW-W 787 X.A1530 X.U1545 A-U WC 20-XX cWW cW-W 788 X.A1530 X.A1546 A-A -- -- cWW cW-W 789 X.G1572 X.U1594 G-U -- -- cWW cW-W 790 X.U1602 X.A1678 U-A rHoogsteen 24-XXIV tWH tW-M 791 X.C1606 X.C1608 C+C -- -- cWH cW+M 792 X.C1612 X.G1615 C-G WC 19-XIX cWW cW-W 793 X.C1648 X.A1654 C+A -- -- tSW tm+W 794 X.A1652 X.U1665 A-U rHoogsteen 24-XXIV tHW tM-W 795 X.C1655 X.G1664 C-G WC 19-XIX cWW cW-W 796 X.C1656 X.G1663 C-G WC 19-XIX cWW cW-W 797 X.A1671 X.U1683 A-U WC 20-XX cWW cW-W 798 X.G1672 X.C1682 G-C WC 19-XIX cWW cW-W 799 X.A1673 X.U1681 A-U WC 20-XX cWW cW-W 800 X.U1674 X.U1680 U-U -- 16-XVI cWW cW-W 801 X.G1675 X.A1679 G-A Sheared 11-XI tSH tm-M 802 X.C1692 X.G2036 C-G WC 19-XIX cWW cW-W 803 X.G1693 X.C2035 G-C WC 19-XIX cWW cW-W 804 X.A1694 X.U2034 A-U WC 20-XX cWW cW-W 805 X.G1695 X.C2033 G-C WC 19-XIX cWW cW-W 806 X.A1699 X.A2032 A-A ~Sheared -- tHS tM-m 807 X.C1700 X.G2031 C-G WC 19-XIX cWW cW-W 808 X.U1701 X.A2030 U-A WC 20-XX cWW cW-W 809 X.C1702 X.G2029 C-G WC 19-XIX cWW cW-W 810 X.U1703 X.A2028 U-A WC 20-XX cWW cW-W 811 X.C1704 X.G2027 C-G WC 19-XIX cWW cW-W 812 X.G1705 X.C2026 G-C WC 19-XIX cWW cW-W 813 X.U1706 X.A2025 U-A WC 20-XX cWW cW-W 814 X.U1707 X.A2024 U-A WC 20-XX cWW cW-W 815 X.A1708 X.G2019 A-G -- -- tHH tM-M 816 X.A1708 X.C2023 A+C ~rWobble 26-XXVI tWW tW+W 817 X.A1709 X.U2022 A-U WC 20-XX cWW cW-W 818 X.G1710 X.C2021 G-C WC 19-XIX cWW cW-W 819 X.G1711 X.A1713 G+A -- -- cSH cm+M 820 X.G1711 X.U2020 G-U -- -- tSW tm-W 821 X.A1712 X.C1719 A+C -- -- cWH cW+M 822 X.A1712 X.U2018 A-U rHoogsteen 24-XXIV tHW tM-W 823 X.A1713 X.U2020 A-U WC 20-XX cWW cW-W 824 X.G1718 X.A1721 G+A -- -- tSW tm+W 825 X.G1718 X.C2017 G-C WC 19-XIX cWW cW-W 826 X.U1724 X.G1790 U-G -- -- tSH tm-M 827 X.A1726 X.U1750 A-U WC 20-XX cWW cW-W 828 X.C1727 X.G1749 C-G WC 19-XIX cWW cW-W 829 X.C1728 X.G1748 C-G WC 19-XIX cWW cW-W 830 X.C1729 X.G1747 C-G WC 19-XIX cWW cW-W 831 X.C1730 X.G1746 C-G WC 19-XIX cWW cW-W 832 X.G1731 X.A1745 G-A Sheared 11-XI tSH tm-M 833 X.U1732 X.A1744 U-A -- -- tSH tm-M 834 X.A1733 X.A1742 A+A -- 02-II tHH tM+M 835 X.A1734 X.G1741 A-G Sheared 11-XI tHS tM-m 836 X.C1735 X.G1740 C-G WC 19-XIX cWW cW-W 837 X.U1736 X.G1739 U+G -- -- tWW tW+W 838 X.U1737 X.A1856 U-A WC 20-XX cWW cW-W 839 X.G1751 X.C1778 G-C WC 19-XIX cWW cW-W 840 X.C1752 X.G1777 C-G WC 19-XIX cWW cW-W 841 X.U1753 X.A1776 U-A WC 20-XX cWW cW-W 842 X.U1753 X.G2879 U-G -- -- cSS cm-m 843 X.C1754 X.G1775 C-G WC 19-XIX cWW cW-W 844 X.U1755 X.A1774 U-A WC 20-XX cWW cW-W 845 X.U1756 X.A1773 U-A -- -- cWW cW-W 846 X.U1757 X.A1773 U-A WC 20-XX cWW cW-W 847 X.G1760 X.C1769 G+C -- -- tWW tW+W 848 X.G1761 X.C1768 G-C WC 19-XIX cWW cW-W 849 X.U1762 X.G1767 U-G Wobble 28-XXVIII cWW cW-W 850 X.U1763 X.G1767 U-G -- -- c.W c.-W 851 X.G1777 X.A2880 G+A -- -- tSW tm+W 852 X.C1779 X.G1783 C-G WC 19-XIX cWW cW-W 853 X.C1781 X.U2743 C-U -- -- cWS cW-m 854 X.A1782 X.G2721 A+G -- 10-X tWS tW+m 855 X.U1784 X.A1789 U-A rHoogsteen 24-XXIV tWH tW-M 856 X.G1791 X.C2015 G-C WC 19-XIX cWW cW-W 857 X.C1792 X.G2014 C-G WC 19-XIX cWW cW-W 858 X.C1793 X.G2013 C-G WC 19-XIX cWW cW-W 859 X.C1794 X.G2012 C-G WC 19-XIX cWW cW-W 860 X.A1795 X.U2011 A-U WC 20-XX cWW cW-W 861 X.A1796 X.U2010 A-U WC 20-XX cWW cW-W 862 X.G1797 X.U2009 G-U Wobble 28-XXVIII cWW cW-W 863 X.C1798 X.G2007 C-G WC 19-XIX cWW cW-W 864 X.G1799 X.C2006 G-C WC 19-XIX cWW cW-W 865 X.A1800 X.A2004 A+A -- -- tSW tm+W 866 X.C1801 X.C1817 C-C -- -- tHW tM-W 867 X.G1803 X.C1815 G-C WC 19-XIX cWW cW-W 868 X.U1804 X.A1814 U-A WC 20-XX cWW cW-W 869 X.U1805 X.A1812 U-A rHoogsteen 24-XXIV tWH tW-M 870 X.C1809 X.C2613 C+C -- 14-XIV tWW tW+W 871 X.A1810 X.G2634 A-G -- -- cSS cm-m 872 X.A1812 X.G2615 A+G Linker -- tWS tW+m 873 X.A1818 X.G1855 A-G Sheared 11-XI tHS tM-m 874 X.G1819 X.U1854 G-U Wobble 28-XXVIII cWW cW-W 875 X.G1820 X.C1853 G-C WC 19-XIX cWW cW-W 876 X.G1820 X.A1927 G+A Linker -- tSW tm+W 877 X.U1821 X.G1852 U-G Wobble 28-XXVIII cWW cW-W 878 X.C1822 X.G1851 C-G WC 19-XIX cWW cW-W 879 X.U1823 X.G1850 U-G Wobble 28-XXVIII cWW cW-W 880 X.C1824 X.G1849 C-G WC 19-XIX cWW cW-W 881 X.U1825 X.A1829 U-A -- -- cSS cm-m 882 X.U1825 X.A1848 U-A WC 20-XX cWW cW-W 883 X.G1826 X.U1845 G+U -- -- tWS tW+m 884 X.C1827 X.A1842 C-A -- -- tWH tW-M 885 X.C1827 X.G1844 C+G rWC 22-XXII tWW tW+W 886 X.C1827 X.A1846 C+A -- -- tHH tM+M 887 X.A1829 X.A1842 A+A -- -- tHH tM+M 888 X.A1830 X.G1841 A-G Sheared 11-XI tHS tM-m 889 X.A1830 X.G1849 A+G Linker -- tWS tW+m 890 X.A1831 X.U1840 A-U WC 20-XX cWW cW-W 891 X.C1832 X.G1839 C-G WC 19-XIX cWW cW-W 892 X.C1833 X.G1838 C-G WC 19-XIX cWW cW-W 893 X.G1834 X.A1836 G-A -- -- tSH tm-M 894 X.G1834 X.A1837 G-A Sheared 11-XI tSH tm-M 895 X.A1856 X.U2003 A-U -- -- tHW tM-W 896 X.C1857 X.G2002 C-G WC 19-XIX cWW cW-W 897 X.G1858 X.C2001 G-C WC 19-XIX cWW cW-W 898 X.C1859 X.G2000 C-G WC 19-XIX cWW cW-W 899 X.C1860 X.G1999 C-G WC 19-XIX cWW cW-W 900 X.U1861 X.A1997 U+A Hoogsteen 23-XXIII cWH cW+M 901 X.G1862 X.G1957 G-G -- -- cWS cW-m 902 X.C1863 X.G1931 C-G WC 19-XIX cWW cW-W 903 X.C1864 X.G1930 C-G WC 19-XIX cWW cW-W 904 X.C1865 X.U1868 C+U -- -- tWH tW+M 905 X.C1865 X.A1928 C-A ~rHoogsteen -- tWH tW-M 906 X.G1867 X.C1929 G-C WC 19-XIX cWW cW-W 907 X.U1868 X.A1928 U-A WC 20-XX cWW cW-W 908 X.G1869 X.U1925 G-U Wobble 28-XXVIII cWW cW-W 909 X.C1870 X.G1924 C-G WC 19-XIX cWW cW-W 910 X.U1871 X.A1923 U-A WC 20-XX cWW cW-W 911 X.G1872 X.C1922 G-C WC 19-XIX cWW cW-W 912 X.G1873 X.C1921 G-C WC 19-XIX cWW cW-W 913 X.G1876 X.C1920 G-C WC 19-XIX cWW cW-W 914 X.G1877 X.C1919 G-C WC 19-XIX cWW cW-W 915 X.U1878 X.G1918 U-G Wobble 28-XXVIII cWW cW-W 916 X.U1879 X.A1917 U-A -- -- tWH tW-M 917 X.A1881 X.G1915 A+G -- -- tHH tM+M 918 X.A1881 X.G2114 A+G Linker -- t.S t.+m 919 X.G1882 X.C1914 G-C WC 19-XIX cWW cW-W 920 X.A1883 X.U1913 A-U WC 20-XX cWW cW-W 921 X.G1884 X.A1912 G-A Sheared 11-XI tSH tm-M 922 X.G1885 X.A1911 G-A Sheared 11-XI tSH tm-M 923 X.G1887 X.G1910 G-G -- -- cWS cW-m 924 X.U1888 X.A1908 U-A WC 20-XX cWW cW-W 925 X.U1888 X.C1909 U-C -- -- cWW cW-W 926 X.G1889 X.U1907 G-U Wobble 28-XXVIII cWW cW-W 927 X.G1890 X.C1906 G-C WC 19-XIX cWW cW-W 928 X.U1891 X.G1905 U-G Wobble 28-XXVIII cWW cW-W 929 X.U1892 X.A1904 U-A -- -- tWH tW-M 930 X.G1894 X.G1902 G-G -- -- cWS cW-m 931 X.C1895 X.G1900 C-G WC 19-XIX cWW cW-W 932 X.C1895 X.C1901 C-C -- -- cWW cW-W 933 X.A1916 X.U2113 A-U -- -- cSS cm-m 934 X.A1926 X.C1929 A+C -- -- cSH cm+M 935 X.U1958 X.A1996 U-A rHoogsteen 24-XXIV tWH tW-M 936 X.A1959 X.G1995 A-G Sheared 11-XI tHS tM-m 937 X.G1960 X.C1994 G-C WC 19-XIX cWW cW-W 938 X.C1961 X.G1991 C-G WC 19-XIX cWW cW-W 939 X.A1963 X.U1970 A+U Hoogsteen 23-XXIII cHW cM+W 940 X.A1963 X.C1989 A+C -- -- tWW tW+W 941 X.A1964 X.G1991 A+G -- -- tWS tW+m 942 X.U1967 X.C1969 U+C -- -- tSW tm+W 943 X.G1972 X.C1988 G-C WC 19-XIX cWW cW-W 944 X.U1973 X.A1987 U-A WC 20-XX cWW cW-W 945 X.C1974 X.G1986 C-G WC 19-XIX cWW cW-W 946 X.G1975 X.C1985 G-C WC 19-XIX cWW cW-W 947 X.G1976 X.C1984 G-C WC 19-XIX cWW cW-W 948 X.G1977 X.U1983 G-U -- -- cW. cW-. 949 X.U1978 X.A1980 U-A -- -- tSH tm-M 950 X.A1979 X.G2575 A+G -- -- tWW tW+W 951 X.A1980 X.G2576 A+G Linker -- tSS tm+m 952 X.U1982 X.C2583 U-C -- -- c.W c.-W 953 X.A1996 X.G1999 A-G -- -- cSS cm-m 954 X.G2019 X.C2023 G-C -- -- cWW cW-W 955 X.G2027 X.U2716 G+U -- -- cSH cm+M 956 X.A2040 X.U2640 A+U rWC 21-XXI tWW tW+W 957 X.U2046 X.G2062 U-G -- -- c.W c.-W 958 X.A2047 X.U2061 A-U WC 20-XX cWW cW-W 959 X.A2050 X.U2067 A-U WC 20-XX cWW cW-W 960 X.C2051 X.G2066 C-G WC 19-XIX cWW cW-W 961 X.C2052 X.G2065 C-G WC 19-XIX cWW cW-W 962 X.U2053 X.A2064 U-A WC 20-XX cWW cW-W 963 X.G2054 X.C2063 G-C WC 19-XIX cWW cW-W 964 X.U2055 X.A2060 U-A rHoogsteen 24-XXIV tWH tW-M 965 X.C2070 X.G2652 C-G WC 19-XIX cWW cW-W 966 X.C2071 X.G2651 C-G WC 19-XIX cWW cW-W 967 X.C2072 X.G2650 C-G WC 19-XIX cWW cW-W 968 X.G2073 X.U2649 G-U Wobble 28-XXVIII cWW cW-W 969 X.C2074 X.G2648 C-G WC 19-XIX cWW cW-W 970 X.C2074 X.A2843 C-A -- -- cSW cm-W 971 X.G2075 X.C2647 G-C WC 19-XIX cWW cW-W 972 X.A2076 X.U2646 A-U WC 20-XX cWW cW-W 973 X.C2077 X.G2645 C-G WC 19-XIX cWW cW-W 974 X.A2078 X.G2079 A+G Platform -- cSH cm+M 975 X.G2079 X.C2644 G-C WC 19-XIX cWW cW-W 976 X.G2080 X.C2643 G-C WC 19-XIX cWW cW-W 977 X.A2081 X.A2604 A-A -- 05-V tHW tM-W 978 X.A2081 X.U2642 A-U WC 20-XX cWW cW-W 979 X.C2082 X.C2526 C+C -- -- tWW tW+W 980 X.G2083 X.C2639 G-C WC 19-XIX cWW cW-W 981 X.G2084 X.C2638 G-C WC 19-XIX cWW cW-W 982 X.G2088 X.G2474 G-G -- -- cHH cM-M 983 X.G2088 X.A2478 G-A Imino 08-VIII cWW cW-W 984 X.C2090 X.A2477 C-A ~Wobble -- cWW cW-W 985 X.C2090 X.C2528 C+C -- -- tWW tW+W 986 X.C2091 X.G2473 C-G WC 19-XIX cWW cW-W 987 X.C2092 X.G2472 C-G WC 19-XIX cWW cW-W 988 X.C2092 X.U2476 C-U -- -- cSW cm-W 989 X.C2093 X.G2471 C-G WC 19-XIX cWW cW-W 990 X.G2094 X.C2470 G-C WC 19-XIX cWW cW-W 991 X.U2095 X.A2457 U-A rHoogsteen 24-XXIV tWH tW-M 992 X.G2096 X.C2469 G-C WC 19-XIX cWW cW-W 993 X.G2097 X.C2468 G-C WC 19-XIX cWW cW-W 994 X.A2098 X.U2465 A-U WC 20-XX cWW cW-W 995 X.G2099 X.C2464 G-C WC 19-XIX cWW cW-W 996 X.C2100 X.G2463 C-G WC 19-XIX cWW cW-W 997 X.U2101 X.A2462 U-A WC 20-XX cWW cW-W 998 X.U2101 X.G2624 U-G -- -- cSS cm-m 999 X.U2102 X.A2104 U+A Hoogsteen 23-XXIII cWH cW+M 1000 X.A2104 X.G2265 A+G -- -- cHW cM+W 1001 X.A2104 X.U2270 A-U WC 20-XX cWW cW-W 1002 X.C2105 X.G2265 C+G -- -- tHH tM+M 1003 X.C2105 X.G2269 C-G WC 19-XIX cWW cW-W 1004 X.U2106 X.A2268 U-A WC 20-XX cWW cW-W 1005 X.G2107 X.C2267 G-C WC 19-XIX cWW cW-W 1006 X.U2108 X.G2266 U-G Wobble 28-XXVIII cWW cW-W 1007 X.A2109 X.G2264 A-G Sheared 11-XI tHS tM-m 1008 X.G2110 X.C2263 G-C WC 19-XIX cWW cW-W 1009 X.C2111 X.G2262 C-G WC 19-XIX cWW cW-W 1010 X.C2112 X.A2261 C-A -- -- cWW cW-W 1011 X.U2113 X.A2260 U-A WC 20-XX cWW cW-W 1012 X.G2114 X.C2259 G-C WC 19-XIX cWW cW-W 1013 X.A2115 X.U2258 A-U WC 20-XX cWW cW-W 1014 X.U2116 X.G2257 U-G Wobble 28-XXVIII cWW cW-W 1015 X.A2117 X.U2256 A-U WC 20-XX cWW cW-W 1016 X.U2118 X.G2255 U-G Wobble 28-XXVIII cWW cW-W 1017 X.U2119 X.A2254 U+A -- -- c.H c.+M 1018 X.G2120 X.C2223 G-C WC 19-XIX cWW cW-W 1019 X.A2121 X.U2222 A-U WC 20-XX cWW cW-W 1020 X.A2122 X.U2221 A-U WC 20-XX cWW cW-W 1021 X.A2123 X.U2220 A-U WC 20-XX cWW cW-W 1022 X.U2124 X.C2219 U-C -- 18-XVIII cWW cW-W 1023 X.C2126 X.G2217 C-G WC 19-XIX cWW cW-W 1024 X.C2126 X.G2218 C-G -- -- cWW cW-W 1025 X.U2224 X.A2252 U-A rHoogsteen 24-XXIV tWH tW-M 1026 X.A2225 X.A2252 A+A -- -- tHH tM+M 1027 X.A2226 X.G2251 A-G Sheared 11-XI tHS tM-m 1028 X.C2227 X.A2250 C-A ~Wobble -- cWW cW-W 1029 X.C2228 X.G2249 C-G WC 19-XIX cWW cW-W 1030 X.C2229 X.G2248 C-G WC 19-XIX cWW cW-W 1031 X.C2231 X.G2247 C-G ~Wobble -- cWW cW-W 1032 X.A2232 X.U2246 A-U WC 20-XX cWW cW-W 1033 X.C2233 X.G2245 C-G WC 19-XIX cWW cW-W 1034 X.C2234 X.G2244 C-G WC 19-XIX cWW cW-W 1035 X.A2235 X.U2243 A-U WC 20-XX cWW cW-W 1036 X.C2236 X.G2242 C-G WC 19-XIX cWW cW-W 1037 X.A2239 X.C2241 A-C -- -- cHH cM-M 1038 X.U2271 X.A2462 U+A Hoogsteen 23-XXIII cWH cW+M 1039 X.U2272 X.G2463 U+G ~Hoogsteen -- cWH cW+M 1040 X.G2273 X.C2285 G-C WC 19-XIX cWW cW-W 1041 X.A2274 X.U2284 A-U WC 20-XX cWW cW-W 1042 X.C2275 X.G2283 C-G WC 19-XIX cWW cW-W 1043 X.G2282 X.C2302 G-C WC 19-XIX cWW cW-W 1044 X.G2286 X.C2308 G-C WC 19-XIX cWW cW-W 1045 X.C2287 X.G2307 C-G WC 19-XIX cWW cW-W 1046 X.C2288 X.G2306 C-G WC 19-XIX cWW cW-W 1047 X.U2289 X.A2305 U-A WC 20-XX cWW cW-W 1048 X.C2290 X.G2304 C-G WC 19-XIX cWW cW-W 1049 X.C2291 X.G2303 C-G WC 19-XIX cWW cW-W 1050 X.U2292 X.A2301 U-A -- -- tWH tW-M 1051 X.A2293 X.A2300 A+A -- 02-II tHH tM+M 1052 X.A2294 X.U2299 A+U rWC 21-XXI tWW tW+W 1053 X.G2306 X.A2354 G-A -- -- cSS cm-m 1054 X.G2307 X.A2415 G+A Linker -- tSW tm+W 1055 X.G2309 X.C2454 G-C WC 19-XIX cWW cW-W 1056 X.C2310 X.G2352 C-G WC 19-XIX cWW cW-W 1057 X.U2311 X.A2411 U-A WC 20-XX cWW cW-W 1058 X.C2312 X.G2410 C-G WC 19-XIX cWW cW-W 1059 X.A2313 X.U2371 A+U -- -- tSW tm+W 1060 X.A2314 X.U2371 A-U -- -- tHW tM-W 1061 X.A2314 X.A2373 A-A -- -- tWH tW-M 1062 X.G2316 X.U2370 G-U Wobble 28-XXVIII cWW cW-W 1063 X.G2317 X.C2369 G-C WC 19-XIX cWW cW-W 1064 X.U2318 X.G2368 U-G Wobble 28-XXVIII cWW cW-W 1065 X.U2319 X.A2367 U-A WC 20-XX cWW cW-W 1066 X.C2320 X.G2366 C-G WC 19-XIX cWW cW-W 1067 X.C2321 X.G2365 C-G WC 19-XIX cWW cW-W 1068 X.C2322 X.G2364 C-G WC 19-XIX cWW cW-W 1069 X.U2323 X.A2362 U-A rHoogsteen 24-XXIV tWH tW-M 1070 X.C2324 X.A2347 C+A -- -- cWH cW+M 1071 X.C2324 X.G2348 C-G WC 19-XIX cWW cW-W 1072 X.A2325 X.A2345 A-A ~Sheared -- tHS tM-m 1073 X.G2326 X.C2344 G-C WC 19-XIX cWW cW-W 1074 X.A2327 X.U2343 A-U WC 20-XX cWW cW-W 1075 X.A2328 X.U2342 A-U WC 20-XX cWW cW-W 1076 X.U2329 X.A2341 U-A WC 20-XX cWW cW-W 1077 X.G2330 X.C2340 G-C WC 19-XIX cWW cW-W 1078 X.G2331 X.U2339 G-U ~Wobble -- cWW cW-W 1079 X.U2333 X.A2338 U+A rWC 21-XXI tWW tW+W 1080 X.A2349 X.A2362 A+A -- 01-I tWW tW+W 1081 X.G2350 X.C2359 G-C WC 19-XIX cWW cW-W 1082 X.U2351 X.G2358 U-G Wobble 28-XXVIII cWW cW-W 1083 X.U2353 X.G2416 U-G Wobble 28-XXVIII cWW cW-W 1084 X.A2355 X.U2414 A-U WC 20-XX cWW cW-W 1085 X.A2356 X.U2413 A-U WC 20-XX cWW cW-W 1086 X.G2357 X.C2412 G-C WC 19-XIX cWW cW-W 1087 X.G2358 X.A2363 G+A Linker -- tSS tm+m 1088 X.G2372 X.G2398 G-G -- -- cHH cM-M 1089 X.C2374 X.G2397 C-G WC 19-XIX cWW cW-W 1090 X.U2375 X.A2396 U-A WC 20-XX cWW cW-W 1091 X.G2376 X.C2395 G-C WC 19-XIX cWW cW-W 1092 X.G2376 X.G2409 G+G -- 06-VI cHW cM+W 1093 X.C2377 X.G2394 C-G WC 19-XIX cWW cW-W 1094 X.G2378 X.A2393 G-A Sheared 11-XI tSH tm-M 1095 X.A2379 X.G2392 A-G Sheared 11-XI tHS tM-m 1096 X.G2380 X.C2391 G-C WC 19-XIX cWW cW-W 1097 X.A2381 X.U2390 A-U WC 20-XX cWW cW-W 1098 X.C2382 X.G2389 C-G WC 19-XIX cWW cW-W 1099 X.C2383 X.A2388 C-A -- -- cWW cW-W 1100 X.C2386 X.G2455 C-G WC 19-XIX cWW cW-W 1101 X.C2395 X.G2409 C-G -- -- c.W c.-W 1102 X.G2399 X.C2408 G-C WC 19-XIX cWW cW-W 1103 X.U2400 X.A2407 U-A WC 20-XX cWW cW-W 1104 X.C2401 X.G2406 C-G WC 19-XIX cWW cW-W 1105 X.G2402 X.A2405 G-A Sheared 11-XI tSH tm-M 1106 X.G2418 X.A2452 G+A -- -- tHH tM+M 1107 X.G2418 X.G2456 G+G -- 04-IV tSS tm+m 1108 X.A2419 X.C2451 A+C -- -- tWW tW+W 1109 X.U2420 X.C2449 U-C -- -- tHW tM-W 1110 X.C2422 X.G2448 C-G WC 19-XIX cWW cW-W 1111 X.G2423 X.C2447 G-C WC 19-XIX cWW cW-W 1112 X.G2424 X.U2446 G-U Wobble 28-XXVIII cWW cW-W 1113 X.U2425 X.A2445 U-A WC 20-XX cWW cW-W 1114 X.G2426 X.C2444 G-C WC 19-XIX cWW cW-W 1115 X.G2427 X.C2443 G-C WC 19-XIX cWW cW-W 1116 X.U2428 X.G2442 U-G Wobble 28-XXVIII cWW cW-W 1117 X.C2430 X.G2441 C-G WC 19-XIX cWW cW-W 1118 X.C2431 X.G2440 C-G WC 19-XIX cWW cW-W 1119 X.G2432 X.A2439 G-A Sheared 11-XI tSH tm-M 1120 X.G2463 X.A2625 G+A Linker -- tSW tm+W 1121 X.U2465 X.C2467 U+C -- -- cSH cm+M 1122 X.G2474 X.A2478 G+A -- -- cWH cW+M 1123 X.A2477 X.C2528 A-C ~rHoogsteen 25-XXV tHW tM-W 1124 X.C2479 X.U2531 C-U -- 18-XVIII cWW cW-W 1125 X.A2480 X.C2526 A-C ~Wobble -- cWW cW-W 1126 X.A2480 X.U2527 A-U WC 20-XX cWW cW-W 1127 X.G2481 X.C2525 G-C WC 19-XIX cWW cW-W 1128 X.G2482 X.C2523 G-C WC 19-XIX cWW cW-W 1129 X.C2483 X.G2522 C-G WC 19-XIX cWW cW-W 1130 X.U2484 X.G2521 U-G Wobble 28-XXVIII cWW cW-W 1131 X.U2485 X.A2486 U+A Platform -- cSH cm+M 1132 X.A2486 X.U2520 A-U WC 20-XX cWW cW-W 1133 X.U2487 X.G2517 U-G -- -- cWW cW-W 1134 X.U2487 X.U2519 U-U -- 16-XVI cWW cW-W 1135 X.C2488 X.G2516 C-G WC 19-XIX cWW cW-W 1136 X.U2489 X.A2515 U-A WC 20-XX cWW cW-W 1137 X.C2490 X.G2514 C-G WC 19-XIX cWW cW-W 1138 X.C2491 X.G2513 C-G WC 19-XIX cWW cW-W 1139 X.C2492 X.G2512 C-G WC 19-XIX cWW cW-W 1140 X.C2493 X.G2511 C-G WC 19-XIX cWW cW-W 1141 X.C2494 X.C2510 C-C -- -- cWW cW-W 1142 X.A2495 X.A2509 A-A ~Sheared -- tSH tm-M 1143 X.A2496 X.G2508 A-G Sheared 11-XI tHS tM-m 1144 X.G2497 X.C2507 G-C WC 19-XIX cWW cW-W 1145 X.A2498 X.U2506 A-U WC 20-XX cWW cW-W 1146 X.G2499 X.A2505 G-A Sheared 11-XI tSH tm-M 1147 X.C2502 X.G2556 C+G rWC 22-XXII tWW tW+W 1148 X.G2516 X.U2518 G+U -- -- cSH cm+M 1149 X.G2517 X.U2519 G+U -- -- cSH cm+M 1150 X.U2531 X.A2599 U+A -- -- tSW tm+W 1151 X.G2532 X.C2637 G+C rWC 22-XXII tWW tW+W 1152 X.U2533 X.U2612 U+U -- 12-XII tWW tW+W 1153 X.C2534 X.G2580 C+G -- -- tWS tW+m 1154 X.C2534 X.G2609 C-G WC 19-XIX cWW cW-W 1155 X.G2535 X.U2607 G-U Wobble 28-XXVIII cWW cW-W 1156 X.G2536 X.C2606 G-C WC 19-XIX cWW cW-W 1157 X.C2537 X.G2605 C-G WC 19-XIX cWW cW-W 1158 X.U2538 X.C2602 U-C -- -- cWW cW-W 1159 X.C2539 X.G2601 C-G WC 19-XIX cWW cW-W 1160 X.A2540 X.U2598 A-U WC 20-XX cWW cW-W 1161 X.U2541 X.G2597 U-G Wobble 28-XXVIII cWW cW-W 1162 X.C2542 X.G2596 C-G WC 19-XIX cWW cW-W 1163 X.G2543 X.C2595 G-C WC 19-XIX cWW cW-W 1164 X.C2544 X.G2594 C-G WC 19-XIX cWW cW-W 1165 X.U2546 X.C2548 U+C -- -- cWH cW+M 1166 X.C2547 X.A2569 C-A -- -- tHW tM-W 1167 X.C2547 X.G2572 C-G WC 19-XIX cWW cW-W 1168 X.C2548 X.G2571 C-G WC 19-XIX cWW cW-W 1169 X.U2549 X.G2570 U-G Wobble 28-XXVIII cWW cW-W 1170 X.G2550 X.C2567 G-C WC 19-XIX cWW cW-W 1171 X.G2551 X.C2566 G-C WC 19-XIX cWW cW-W 1172 X.G2551 X.A2768 G+A Linker -- tSS tm+m 1173 X.G2552 X.C2565 G-C WC 19-XIX cWW cW-W 1174 X.G2553 X.U2564 G-U Wobble 28-XXVIII cWW cW-W 1175 X.C2554 X.G2563 C-G WC 19-XIX cWW cW-W 1176 X.U2555 X.G2562 U-G Wobble 28-XXVIII cWW cW-W 1177 X.A2558 X.A2689 A+A -- -- tW. tW+. 1178 X.G2559 X.G2690 G+G -- 04-IV tSS tm+m 1179 X.A2568 X.A2792 A-A -- -- cSW cm-W 1180 X.G2571 X.A2591 G+A -- -- t.W t.+W 1181 X.G2572 X.A2592 G+A Linker -- tSW tm+W 1182 X.U2573 X.G2594 U+G ~Hoogsteen -- cWH cW+M 1183 X.U2574 X.A2588 U-A WC 20-XX cWW cW-W 1184 X.G2575 X.C2587 G-C WC 19-XIX cWW cW-W 1185 X.G2576 X.C2586 G-C WC 19-XIX cWW cW-W 1186 X.G2577 X.C2585 G-C WC 19-XIX cWW cW-W 1187 X.C2578 X.G2584 C-G WC 19-XIX cWW cW-W 1188 X.U2579 X.C2583 U-C -- -- tW. tW-. 1189 X.G2580 X.G2609 G-G -- -- cSS cm-m 1190 X.U2589 X.A2593 U-A rHoogsteen 24-XXIV tWH tW-M 1191 X.A2591 X.C2673 A-C -- -- tWS tW-m 1192 X.U2607 X.G2609 U+G -- -- cWH cW+M 1193 X.A2614 X.G2635 A-G Sheared 11-XI tHS tM-m 1194 X.G2615 X.C2633 G-C WC 19-XIX cWW cW-W 1195 X.A2616 X.U2632 A-U WC 20-XX cWW cW-W 1196 X.A2617 X.U2631 A-U WC 20-XX cWW cW-W 1197 X.C2618 X.G2630 C-G WC 19-XIX cWW cW-W 1198 X.G2619 X.C2628 G-C WC 19-XIX cWW cW-W 1199 X.U2620 X.A2627 U-A WC 20-XX cWW cW-W 1200 X.U2620 X.A2629 U-A -- -- cSH cm-M 1201 X.C2621 X.G2626 C-G WC 19-XIX cWW cW-W 1202 X.G2622 X.A2625 G-A Sheared 11-XI tSH tm-M 1203 X.A2641 X.C2643 A+C -- -- cSH cm+M 1204 X.G2648 X.A2843 G+A -- -- c.H c.+M 1205 X.C2653 X.G2804 C-G WC 19-XIX cWW cW-W 1206 X.G2654 X.A2808 G+A Linker -- tSS tm+m 1207 X.G2657 X.C2815 G-C WC 19-XIX cWW cW-W 1208 X.G2657 X.A2911 G-A -- -- cSS cm-m 1209 X.G2658 X.C2814 G-C WC 19-XIX cWW cW-W 1210 X.G2658 X.A2830 G+A Linker -- tSS tm+m 1211 X.A2659 X.U2813 A-U WC 20-XX cWW cW-W 1212 X.A2660 X.U2812 A-U WC 20-XX cWW cW-W 1213 X.A2661 X.U2811 A-U WC 20-XX cWW cW-W 1214 X.U2662 X.A2810 U-A WC 20-XX cWW cW-W 1215 X.U2663 X.G2809 U-G Wobble 28-XXVIII cWW cW-W 1216 X.U2664 X.A2803 U-A rHoogsteen 24-XXIV tWH tW-M 1217 X.G2665 X.A2805 G-A Sheared 11-XI tSH tm-M 1218 X.A2666 X.A2802 A-A ~Sheared -- tHS tM-m 1219 X.G2667 X.C2801 G-C WC 19-XIX cWW cW-W 1220 X.A2668 X.U2800 A-U WC 20-XX cWW cW-W 1221 X.G2669 X.C2799 G-C WC 19-XIX cWW cW-W 1222 X.G2670 X.C2798 G-C WC 19-XIX cWW cW-W 1223 X.C2673 X.G2701 C-G WC 19-XIX cWW cW-W 1224 X.U2674 X.G2700 U-G Wobble 28-XXVIII cWW cW-W 1225 X.G2675 X.U2699 G-U Wobble 28-XXVIII cWW cW-W 1226 X.U2676 X.A2698 U-A WC 20-XX cWW cW-W 1227 X.C2677 X.G2697 C-G WC 19-XIX cWW cW-W 1228 X.C2678 X.G2696 C-G WC 19-XIX cWW cW-W 1229 X.U2679 X.G2695 U-G Wobble 28-XXVIII cWW cW-W 1230 X.U2680 X.C2694 U-C -- -- cWW cW-W 1231 X.U2683 X.A2692 U-A rHoogsteen 24-XXIV tWH tW-M 1232 X.A2684 X.G2691 A-G Sheared 11-XI tHS tM-m 1233 X.C2685 X.G2690 C-G WC 19-XIX cWW cW-W 1234 X.G2686 X.A2689 G-A Sheared 11-XI tSH tm-M 1235 X.A2702 X.G2759 A-G Imino 08-VIII cWW cW-W 1236 X.C2703 X.G2758 C-G WC 19-XIX cWW cW-W 1237 X.C2703 X.G2759 C-G ~Wobble -- cWW cW-W 1238 X.A2704 X.U2757 A-U WC 20-XX cWW cW-W 1239 X.U2705 X.G2756 U-G Wobble 28-XXVIII cWW cW-W 1240 X.A2706 X.U2755 A-U WC 20-XX cWW cW-W 1241 X.C2707 X.G2754 C-G WC 19-XIX cWW cW-W 1242 X.C2708 X.A2752 C-A ~rHoogsteen 25-XXV tWH tW-M 1243 X.U2709 X.G2754 U-G -- -- c.S c.-m 1244 X.C2710 X.G2754 C-G -- -- cWS cW-m 1245 X.U2711 X.A2752 U-A WC 20-XX cWW cW-W 1246 X.G2712 X.U2751 G-U Wobble 28-XXVIII cWW cW-W 1247 X.G2713 X.C2750 G-C WC 19-XIX cWW cW-W 1248 X.U2714 X.G2749 U-G Wobble 28-XXVIII cWW cW-W 1249 X.G2715 X.A2748 G-A Sheared 11-XI tSH tm-M 1250 X.C2718 X.G2745 C-G WC 19-XIX cWW cW-W 1251 X.C2719 X.G2744 C-G WC 19-XIX cWW cW-W 1252 X.A2720 X.U2743 A-U WC 20-XX cWW cW-W 1253 X.G2721 X.C2742 G-C WC 19-XIX cWW cW-W 1254 X.U2722 X.G2741 U-G Wobble 28-XXVIII cWW cW-W 1255 X.U2723 X.A2738 U-A WC 20-XX cWW cW-W 1256 X.G2724 X.C2737 G-C WC 19-XIX cWW cW-W 1257 X.U2725 X.G2736 U-G Wobble 28-XXVIII cWW cW-W 1258 X.C2726 X.G2735 C-G WC 19-XIX cWW cW-W 1259 X.G2727 X.C2734 G-C WC 19-XIX cWW cW-W 1260 X.U2728 X.A2733 U-A WC 20-XX cWW cW-W 1261 X.G2746 X.G2892 G+G -- -- t.W t.+W 1262 X.U2747 X.A2893 U+A Hoogsteen 23-XXIII cWH cW+M 1263 X.C2761 X.C2797 C+C -- -- tHH tM+M 1264 X.G2762 X.C2796 G-C WC 19-XIX cWW cW-W 1265 X.G2763 X.C2795 G-C WC 19-XIX cWW cW-W 1266 X.G2764 X.C2794 G-C WC 19-XIX cWW cW-W 1267 X.A2765 X.G2793 A-G Imino 08-VIII cWW cW-W 1268 X.U2766 X.A2791 U-A rHoogsteen 24-XXIV tWH tW-M 1269 X.A2768 X.G2790 A-G Sheared 11-XI tHS tM-m 1270 X.G2769 X.U2789 G-U Wobble 28-XXVIII cWW cW-W 1271 X.U2770 X.A2788 U-A WC 20-XX cWW cW-W 1272 X.G2771 X.C2787 G-C WC 19-XIX cWW cW-W 1273 X.C2772 X.G2786 C-G WC 19-XIX cWW cW-W 1274 X.U2773 X.U2783 U-U Calcutta -- tWH tW-M 1275 X.U2773 X.A2785 U-A -- -- tWH tW-M 1276 X.G2774 X.A2784 G-A Sheared 11-XI tSH tm-M 1277 X.A2775 X.U2781 A-U rHoogsteen 24-XXIV tHW tM-W 1278 X.A2776 X.A2780 A-A -- 05-V tHW tM-W 1279 X.A2777 X.C2779 A+C -- -- cSH cm+M 1280 X.U2783 X.A2785 U+A Hoogsteen 23-XXIII cWH cW+M 1281 X.G2804 X.U2806 G+U -- -- cSH cm+M 1282 X.C2815 X.A2829 C-A -- -- cSS cm-m 1283 X.C2816 X.G2913 C-G WC 19-XIX cWW cW-W 1284 X.A2817 X.U2826 A-U WC 20-XX cWW cW-W 1285 X.A2818 X.U2825 A-U WC 20-XX cWW cW-W 1286 X.C2819 X.G2824 C-G WC 19-XIX cWW cW-W 1287 X.A2827 X.A2912 A-A -- 05-V tWH tW-M 1288 X.U2828 X.A2911 U-A rHoogsteen 24-XXIV tWH tW-M 1289 X.U2828 X.A2912 U-A -- -- tWH tW-M 1290 X.A2830 X.G2910 A-G Sheared 11-XI tHS tM-m 1291 X.G2831 X.C2909 G-C WC 19-XIX cWW cW-W 1292 X.A2832 X.U2908 A-U WC 20-XX cWW cW-W 1293 X.U2833 X.A2907 U-A WC 20-XX cWW cW-W 1294 X.C2834 X.G2906 C-G WC 19-XIX cWW cW-W 1295 X.C2835 X.G2851 C-G WC 19-XIX cWW cW-W 1296 X.C2836 X.G2850 C-G WC 19-XIX cWW cW-W 1297 X.U2837 X.A2849 U-A WC 20-XX cWW cW-W 1298 X.C2838 X.G2848 C-G WC 19-XIX cWW cW-W 1299 X.A2839 X.U2847 A-U WC 20-XX cWW cW-W 1300 X.A2841 X.A2846 A-A -- -- cSW cm-W 1301 X.G2850 X.A2903 G+A Linker -- tSS tm+m 1302 X.A2854 X.A2903 A-A ~Sheared -- tSH tm-M 1303 X.A2855 X.C2900 A-C -- -- tWH tW-M 1304 X.U2856 X.A2899 U+A -- -- t.H t.+M 1305 X.U2856 X.A2902 U-A WC 20-XX cWW cW-W 1306 X.A2857 X.A2899 A+A -- -- t.H t.+M 1307 X.A2857 X.U2901 A-U WC 20-XX cWW cW-W 1308 X.G2858 X.C2900 G-C WC 19-XIX cWW cW-W 1309 X.G2859 X.U2898 G-U Wobble 28-XXVIII cWW cW-W 1310 X.U2860 X.A2897 U-A WC 20-XX cWW cW-W 1311 X.U2861 X.A2896 U-A WC 20-XX cWW cW-W 1312 X.C2862 X.G2895 C-G WC 19-XIX cWW cW-W 1313 X.G2863 X.C2894 G-C WC 19-XIX cWW cW-W 1314 X.G2865 X.U2891 G-U Wobble 28-XXVIII cWW cW-W 1315 X.G2866 X.C2890 G-C WC 19-XIX cWW cW-W 1316 X.U2867 X.G2889 U-G Wobble 28-XXVIII cWW cW-W 1317 X.G2868 X.A2888 G-A Sheared 11-XI tSH tm-M 1318 X.G2869 X.G2886 G+G -- -- tSS tm+m 1319 X.A2870 X.A2888 A-A -- -- tHS tM-m 1320 X.A2871 X.G2886 A+G -- -- cHH cM+M 1321 X.G2872 X.U2885 G-U Wobble 28-XXVIII cWW cW-W 1322 X.C2873 X.G2884 C-G WC 19-XIX cWW cW-W 1323 X.A2874 X.U2883 A-U WC 20-XX cWW cW-W 1324 X.U2875 X.A2882 U-A WC 20-XX cWW cW-W 1325 X.G2876 X.C2881 G-C WC 19-XIX cWW cW-W 1326 X.G2877 X.A2880 G-A -- -- tWH tW-M 1327 X.A2899 X.A2902 A-A -- -- cHH cM-M 1328 Y.C2 Y.G113 C-G WC 19-XIX cWW cW-W 1329 Y.U3 Y.G112 U-G -- -- cWW cW-W 1330 Y.G4 Y.A111 G+A -- 09-IX cWH cW+M 1331 Y.G5 Y.C110 G-C WC 19-XIX cWW cW-W 1332 Y.U6 Y.C109 U-C -- -- cWW cW-W 1333 Y.G7 Y.G108 G+G -- 06-VI cWH cW+M 1334 Y.A8 Y.U107 A-U WC 20-XX cWW cW-W 1335 Y.C9 Y.U106 C-U -- -- cWW cW-W 1336 Y.G14 Y.C66 G-C WC 19-XIX cWW cW-W 1337 Y.C15 Y.G65 C-G WC 19-XIX cWW cW-W 1338 Y.C15 Y.G105 C+G -- -- tW. tW+. 1339 Y.A16 Y.U63 A-U WC 20-XX cWW cW-W 1340 Y.A17 Y.U62 A-U WC 20-XX cWW cW-W 1341 Y.G18 Y.U61 G-U -- -- cWW cW-W 1342 Y.G19 Y.C60 G-C WC 19-XIX cWW cW-W 1343 Y.A20 Y.U59 A-U WC 20-XX cWW cW-W 1344 Y.G21 Y.G58 G-G -- -- cWW cW-W 1345 Y.G22 Y.G57 G-G -- -- tW. tW-. 1346 Y.G22 Y.G58 G-G -- -- cWW cW-W 1347 Y.C26 Y.U54 C-U -- -- cWW cW-W 1348 Y.C26 Y.G57 C-G -- -- cWW cW-W 1349 Y.A27 Y.U53 A-U WC 20-XX cWW cW-W 1350 Y.A27 Y.A56 A-A -- -- cSW cm-W 1351 Y.C28 Y.G52 C-G WC 19-XIX cWW cW-W 1352 Y.C28 Y.A55 C-A -- -- cSW cm-W 1353 Y.C29 Y.G49 C-G WC 19-XIX cWW cW-W 1354 Y.C29 Y.A51 C-A -- -- cSW cm-W 1355 Y.U30 Y.A48 U-A WC 20-XX cWW cW-W 1356 Y.G31 Y.C47 G-C WC 19-XIX cWW cW-W 1357 Y.U32 Y.A46 U-A WC 20-XX cWW cW-W 1358 Y.C34 Y.C47 C-C -- -- cWS cW-m 1359 Y.C35 Y.A46 C-A -- -- cWS cW-m 1360 Y.C36 Y.G42 C-G WC 19-XIX cWW cW-W 1361 Y.A37 Y.A44 A-A -- -- cSW cm-W 1362 Y.U38 Y.A43 U-A ~Sheared -- tSH tm-M 1363 Y.G42 Y.C45 G+C -- -- tSW tm+W 1364 Y.U53 Y.A55 U+A -- -- cSH cm+M 1365 Y.U54 Y.G57 U+G -- -- cWH cW+M 1366 Y.A64 Y.C66 A+C -- -- cSH cm+M 1367 Y.G65 Y.G105 G-G -- -- tHW tM-W 1368 Y.A68 Y.A103 A-A -- -- cWW cW-W 1369 Y.C69 Y.A102 C-A -- -- cWW cW-W 1370 Y.G70 Y.G101 G-G ~Sheared -- tSH tm-M 1371 Y.A71 Y.A100 A+A -- -- tHH tM+M 1372 Y.G73 Y.G98 G-G -- -- cWW cW-W 1373 Y.G74 Y.A97 G-A -- -- tWH tW-M 1374 Y.U75 Y.G96 U-G ~rHoogsteen -- tWH tW-M 1375 Y.A76 Y.A95 A-A ~Sheared -- tHS tM-m 1376 Y.G77 Y.U94 G-U -- -- cWW cW-W 1377 Y.C78 Y.C93 C-C -- -- cWW cW-W 1378 Y.C79 Y.G92 C-G ~Wobble -- cWW cW-W 1379 Y.A80 Y.C91 A-C -- -- cWW cW-W 1380 Y.A81 Y.C90 A-C -- -- cWW cW-W 1381 Y.C82 Y.U89 C-U -- -- cWW cW-W 1382 Y.U83 Y.U88 U-U -- -- cWW cW-W 1383 Y.U84 Y.C86 U+C -- -- cSH cm+M **************************************************************************** List of 215 multiplets 1 nts=3 CUG X.C32,X.U34,X.G519 2 nts=3 GCG X.G35,X.C491,X.G496 3 nts=3 AUA X.A38,X.U487,X.A658 4 nts=3 CGA X.C39,X.G486,X.A658 5 nts=3 AUC X.A44,X.U480,X.C481 6 nts=3 GAC X.G45,X.A183,X.C479 7 nts=3 AGU X.A49,X.G51,X.U119 8 nts=3 CGA X.C57,X.G70,X.A71 9 nts=3 GCA X.G58,X.C69,X.A73 10 nts=3 AGA X.A185,X.G218,X.A478 11 nts=3 GCA X.G190,X.C212,X.A1402 12 nts=3 AGU X.A193,X.G208,X.U209 13 nts=3 AUG X.A199,X.U871,X.G876 14 nts=3 AAU X.A224,X.A268,X.U473 15 nts=3 AGC X.A226,X.G453,X.C466 16 nts=3 AGC X.A230,X.G456,X.C463 17 nts=3 CGA X.C241,X.G262,X.A651 18 nts=3 GUA X.G245,X.U246,X.A258 19 nts=3 GCC X.G269,X.C323,X.C472 20 nts=3 AGU X.A305,X.G410,X.U412 21 nts=3 AAU X.A318,X.A325,X.U401 22 nts=3 AAG X.A343,X.A367,X.G381 23 nts=3 CAG X.C431,X.A436,X.G457 24 nts=3 ACG X.A489,X.C1239,X.G1283 25 nts=3 GAA X.G492,X.A495,X.A500 26 nts=3 UGC X.U494,X.G625,X.C1296 27 nts=3 UGC X.U494,X.G626,X.C1295 28 nts=3 GUA X.G504,X.U505,X.A516 29 nts=3 GUA X.G511,X.U728,X.A839 30 nts=3 CAA X.C528,X.A529,X.A542 31 nts=3 AUG X.A577,X.U2046,X.G2062 32 nts=3 AAU X.A577,X.A2047,X.U2061 33 nts=3 CGA X.C587,X.G594,X.A1258 34 nts=3 GUA X.G588,X.U589,X.A592 35 nts=3 UUA X.U605,X.U2055,X.A2060 36 nts=3 CGA X.C607,X.G620,X.A1291 37 nts=3 GAU X.G656,X.A659,X.U661 38 nts=3 AUG X.A676,X.U2428,X.G2442 39 nts=3 AUA X.A688,X.U2375,X.A2396 40 nts=3 CUA X.C718,X.U852,X.A2087 41 nts=3 GGC X.G729,X.G820,X.C836 42 nts=3 AGG X.A744,X.G778,X.G1677 43 nts=3 GCC X.G774,X.C1801,X.C1817 44 nts=3 GCA X.G783,X.C803,X.A2008 45 nts=3 ACG X.A784,X.C785,X.G802 46 nts=3 CAG X.C789,X.A794,X.G798 47 nts=3 UAA X.U792,X.A1303,X.A2041 48 nts=3 AGC X.A819,X.G822,X.C832 49 nts=3 AGC X.A826,X.G1803,X.C1815 50 nts=3 GGC X.G837,X.G2099,X.C2464 51 nts=3 AUC X.A868,X.U879,X.C988 52 nts=3 GUA X.G904,X.U905,X.A962 53 nts=3 AUC X.A908,X.U958,X.C959 54 nts=3 GCC X.G909,X.C912,X.C957 55 nts=3* CUA X.C910,X.U913,X.A954 56 nts=3 GGC X.G924,X.G925,X.C942 57 nts=3 ACG X.A956,X.C2290,X.G2304 58 nts=3 AUG X.A991,X.U1014,X.G1028 59 nts=3 UGG X.U999,X.G1006,X.G2277 60 nts=3 AUG X.A1003,X.U2484,X.G2521 61 nts=3 AGA X.A1019,X.G1033,X.A1200 62 nts=3 AGC X.A1025,X.G2054,X.C2063 63 nts=3 GAC X.G1047,X.A1054,X.C1196 64 nts=3 CCG X.C1049,X.C1179,X.G1182 65 nts=3 AUA X.A1171,X.U2489,X.A2515 66 nts=3 ACG X.A1171,X.C2490,X.G2514 67 nts=3 ACG X.A1173,X.C2542,X.G2596 68 nts=3 ACG X.A1177,X.C2052,X.G2065 69 nts=3 GGA X.G1247,X.G1250,X.A1275 70 nts=3 GCU X.G1307,X.C1362,X.U2038 71 nts=3 ACG X.A1312,X.C1332,X.G1689 72 nts=3 ACG X.A1324,X.C1692,X.G2036 73 nts=3 UUG X.U1325,X.U1363,X.G1691 74 nts=3 GUA X.G1336,X.U1338,X.A1685 75 nts=3 GCA X.G1347,X.C1648,X.A1654 76 nts=3 UUA X.U1348,X.U1350,X.A1647 77 nts=3 CGA X.C1351,X.G1375,X.A1430 78 nts=3 CGG X.C1352,X.G1374,X.G1429 79 nts=3 GAC X.G1356,X.A1359,X.C1370 80 nts=3 GGC X.G1357,X.G1360,X.C1368 81 nts=3 GCA X.G1361,X.C1367,X.A1660 82 nts=3 GAC X.G1380,X.A1421,X.C1441 83 nts=3 CGA X.C1388,X.G1417,X.A1617 84 nts=3 GGC X.G1397,X.G1408,X.C2241 85 nts=3 GCU X.G1466,X.C1542,X.U1623 86 nts=3 ACU X.A1475,X.C1606,X.U1609 87 nts=3 GCC X.G1476,X.C1606,X.C1608 88 nts=3 GCA X.G1479,X.C1604,X.A1605 89 nts=3 GGC X.G1480,X.G1561,X.C1604 90 nts=3 AGC X.A1488,X.G1490,X.C1595 91 nts=3* UAA X.U1519,X.A1521,X.A1560 92 nts=3 CGU X.C1704,X.G2027,X.U2716 93 nts=3 AGC X.A1708,X.G2019,X.C2023 94 nts=3 GAU X.G1711,X.A1713,X.U2020 95 nts=3 ACU X.A1712,X.C1719,X.U2018 96 nts=3 GAC X.G1718,X.A1721,X.C2017 97 nts=3 UAU X.U1737,X.A1856,X.U2003 98 nts=3 UAG X.U1753,X.A1776,X.G2879 99 nts=3 CAU X.C1781,X.A2720,X.U2743 100 nts=3 AGC X.A1782,X.G2721,X.C2742 101 nts=3 GCA X.G1820,X.C1853,X.A1927 102 nts=3 CGA X.C1827,X.G1844,X.A1846 103 nts=3 CUA X.C1865,X.U1868,X.A1928 104 nts=3 GAC X.G1867,X.A1926,X.C1929 105 nts=3 AUA X.A1916,X.U2113,X.A2260 106 nts=3 CAG X.C1961,X.A1964,X.G1991 107 nts=3 AUC X.A1963,X.U1970,X.C1989 108 nts=3 UUC X.U1982,X.U2579,X.C2583 109 nts=3 CGA X.C2074,X.G2648,X.A2843 110 nts=3 AGC X.A2078,X.G2079,X.C2644 111 nts=3 GAC X.G2080,X.A2641,X.C2643 112 nts=3 AAU X.A2081,X.A2604,X.U2642 113 nts=3 CAC X.C2082,X.A2480,X.C2526 114 nts=3 GGA X.G2088,X.G2474,X.A2478 115 nts=3 CAC X.C2090,X.A2477,X.C2528 116 nts=3 CGU X.C2092,X.G2472,X.U2476 117 nts=3 AUC X.A2098,X.U2465,X.C2467 118 nts=3 UAU X.U2102,X.A2104,X.U2270 119 nts=3 CGG X.C2105,X.G2265,X.G2269 120 nts=3* UAA X.U2224,X.A2225,X.A2252 121 nts=3 CGA X.C2287,X.G2307,X.A2415 122 nts=3 CGA X.C2288,X.G2306,X.A2354 123 nts=3 AUA X.A2314,X.U2371,X.A2373 124 nts=3 UAA X.U2323,X.A2349,X.A2362 125 nts=3 CAG X.C2324,X.A2347,X.G2348 126 nts=3 UGA X.U2351,X.G2358,X.A2363 127 nts=3 GAG X.G2418,X.A2452,X.G2456 128 nts=3 CUA X.C2479,X.U2531,X.A2599 129 nts=3 UAU X.U2485,X.A2486,X.U2520 130 nts=3 UGU X.U2487,X.G2517,X.U2519 131 nts=3 CGU X.C2488,X.G2516,X.U2518 132 nts=3 CGG X.C2534,X.G2580,X.G2609 133 nts=3 CUG X.C2544,X.U2573,X.G2594 134 nts=3 UCG X.U2546,X.C2548,X.G2571 135 nts=3 AGA X.A2558,X.G2686,X.A2689 136 nts=3 GCG X.G2559,X.C2685,X.G2690 137 nts=3 UAA X.U2620,X.A2627,X.A2629 138 nts=3 CGU X.C2653,X.G2804,X.U2806 139 nts=3 CCG X.C2707,X.C2710,X.G2754 140 nts=3 CUA X.C2708,X.U2711,X.A2752 141 nts=3 UUA X.U2773,X.U2783,X.A2785 142 nts=3 AGC X.A2855,X.G2858,X.C2900 143 nts=3 UAA X.U2856,X.A2899,X.A2902 144 nts=3 GAA X.G2868,X.A2870,X.A2888 145 nts=3 GAG X.G2869,X.A2871,X.G2886 146 nts=3 CGG Y.C15,Y.G65,Y.G105 147 nts=3 CUG Y.C26,Y.U54,Y.G57 148 nts=3 AUA Y.A27,Y.U53,Y.A56 149 nts=3 CGA Y.C28,Y.G52,Y.A55 150 nts=3 CGA Y.C29,Y.G49,Y.A51 151 nts=3 GCC Y.G31,Y.C34,Y.C47 152 nts=3 UCA Y.U32,Y.C35,Y.A46 153 nts=3 CGC Y.C36,Y.G42,Y.C45 154 nts=4 UACG X.U12,X.A571,X.C2070,X.G2652 155 nts=4 UACG X.U25,X.A560,X.C623,X.G1298 156 nts=4 GACG X.G26,X.A559,X.C624,X.G1297 157 nts=4 CAAG X.C47,X.A52,X.A118,X.G180 158 nts=4 UAUC X.U63,X.A65,X.U89,X.C502 159 nts=4 UAAA X.U79,X.A106,X.A388,X.A389 160 nts=4 GCAG X.G80,X.C105,X.A337,X.G387 161 nts=4 CUAA X.C195,X.U206,X.A722,X.A845 162 nts=4 GCGA X.G197,X.C204,X.G250,X.A254 163 nts=4 AUGG X.A198,X.U203,X.G253,X.G432 164 nts=4 GAAA X.G223,X.A236,X.A266,X.A475 165 nts=4 AAAU X.A229,X.A231,X.A455,X.U464 166 nts=4 CGAG X.C240,X.G263,X.A652,X.G664 167 nts=4 AUUU X.A273,X.U298,X.U299,X.U415 168 nts=4 AGGC X.A275,X.G296,X.G304,X.C413 169 nts=4 GUAA X.G418,X.U419,X.A447,X.A468 170 nts=4 GAGC X.G509,X.A512,X.G727,X.C840 171 nts=4 UAUA X.U521,X.A525,X.U544,X.A548 172 nts=4 GAGA X.G522,X.A526,X.G545,X.A550 173 nts=4 GGGC X.G527,X.G543,X.G551,X.C554 174 nts=4 UGCA X.U612,X.G990,X.C1015,X.A1027 175 nts=4 GCGA X.G628,X.C717,X.G853,X.A1292 176 nts=4 ACGA X.A629,X.C716,X.G854,X.A1289 177 nts=4 ACGA X.A629,X.C717,X.G853,X.A1289 178 nts=4 AGCG X.A689,X.G2376,X.C2395,X.G2409 179 nts=4 AUGC X.A720,X.U848,X.G2094,X.C2470 180 nts=4 AAGC X.A721,X.A847,X.G2096,X.C2469 181 nts=4 AUGC X.A730,X.U733,X.G823,X.C831 182 nts=4 CGAG X.C737,X.G815,X.A1391,X.G1414 183 nts=4 CGGA X.C857,X.G1234,X.G1261,X.A1264 184 nts=4 GCUG X.G907,X.C960,Y.U75,Y.G96 185 nts=4 GCAU X.G996,X.C1009,X.A2294,X.U2299 186 nts=4 GCAA X.G997,X.C1008,X.A2293,X.A2300 187 nts=4 GUUA X.G998,X.U1007,X.U2292,X.A2301 188 nts=4 GACG X.G1000,X.A1004,X.C2483,X.G2522 189 nts=4 GCAG X.G1021,X.C1030,X.A1045,X.G1198 190 nts=4 UGGA X.U1056,X.G1069,X.G1183,X.A1187 191 nts=4 UAGA X.U1063,X.A1065,X.G1066,X.A1186 192 nts=4 UGUA X.U1063,X.G1066,X.U1067,X.A1186 193 nts=4 AACG X.A1072,X.A1170,X.C2491,X.G2513 194 nts=4 AGCG X.A1073,X.G1169,X.C2492,X.G2512 195 nts=4 GUAU X.G1304,X.U1305,X.A2040,X.U2640 196 nts=4 AGAU X.A1345,X.G1650,X.A1652,X.U1665 197 nts=4 CGGA X.C1387,X.G1418,X.G1470,X.A1619 198 nts=4 CGGA X.C1399,X.G1406,X.G1834,X.A1837 199 nts=4 CGGA X.C1400,X.G1405,X.G1834,X.A1836 200 nts=4 AUAA X.A1422,X.U1439,X.A1513,X.A1567 201 nts=4 CGGA X.C1752,X.G1777,X.G2877,X.A2880 202 nts=4 UAGC X.U1805,X.A1812,X.G2615,X.C2633 203 nts=4 CAGG X.C1824,X.A1830,X.G1841,X.G1849 204 nts=4 UAAA X.U1825,X.A1829,X.A1842,X.A1848 205 nts=4 CUAG X.C1860,X.U1958,X.A1996,X.G1999 206 nts=4 AGGC X.A1881,X.G1915,X.G2114,X.C2259 207 nts=4 UAGC X.U1978,X.A1980,X.G2576,X.C2586 208 nts=4 UUAG X.U2101,X.U2271,X.A2462,X.G2624 209 nts=4 CAGA X.C2547,X.A2569,X.G2572,X.A2592 210 nts=4 GCAG X.G2551,X.C2566,X.A2768,X.G2790 211 nts=4 GCUA X.G2657,X.C2815,X.U2828,X.A2911 212 nts=4 GCAG X.G2658,X.C2814,X.A2830,X.G2910 213 nts=4 CGAA X.C2836,X.G2850,X.A2854,X.A2903 214 nts=5 ACGGU X.A864,X.C882,X.G986,X.G1226,X.U1227 215 nts=5 CUGGA X.C2100,X.U2272,X.G2463,X.G2622,X.A2625 **************************************************************************** List of 88 helices Note: a helix is defined by base-stacking interactions, regardless of bp type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=7 strand-1 5'-UUAAGUU-3' bp-type ||||||. strand-2 3'-AAUUCAA-5' helix-form AA.AAx 1 X.U3 X.A2919 U-A WC 20-XX cWW cW-W 2 X.U4 X.A2918 U-A WC 20-XX cWW cW-W 3 X.A5 X.U2917 A-U WC 20-XX cWW cW-W 4 X.A6 X.U2916 A-U WC 20-XX cWW cW-W 5 X.G7 X.C2915 G-C WC 19-XIX cWW cW-W 6 X.U8 X.A2914 U-A WC 20-XX cWW cW-W 7 X.U9 X.A2656 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#2[6] bps=46 strand-1 5'-UAGGGCGCACGGUGGAUGCCUAGGCACUAGAAGACCCGGAGAACUG-3' bp-type ..||||||||||.....|||..||||||||.||.|||||......| strand-2 3'-AAUUCGUGUGCCAAAGUCGGAACCGUGAUCUUCGGGGCCCAUAUUC-5' helix-form xx..A..AA.A......x.xxx.x...AA.x.x.xAAA...x... 1 X.U12 X.A571 U-A rHoogsteen 24-XXIV tWH tW-M 2 X.A13 X.A14 A+A Platform -- cSH cm+M 3 X.G15 X.U570 G-U Wobble 28-XXVIII cWW cW-W 4 X.G16 X.U569 G-U Wobble 28-XXVIII cWW cW-W 5 X.G17 X.C568 G-C WC 19-XIX cWW cW-W 6 X.C18 X.G567 C-G WC 19-XIX cWW cW-W 7 X.G19 X.U566 G-U Wobble 28-XXVIII cWW cW-W 8 X.C20 X.G565 C-G WC 19-XIX cWW cW-W 9 X.A21 X.U564 A-U WC 20-XX cWW cW-W 10 X.C22 X.G563 C-G WC 19-XIX cWW cW-W 11 X.G23 X.C562 G-C WC 19-XIX cWW cW-W 12 X.G24 X.C561 G-C WC 19-XIX cWW cW-W 13 X.U25 X.A560 U-A -- -- tWH tW-M 14 X.G26 X.A559 G-A Sheared 11-XI tSH tm-M 15 X.G27 X.A558 G-A Sheared 11-XI tSH tm-M 16 X.A28 X.G557 A-G Sheared 11-XI tHS tM-m 17 X.U29 X.U556 U-U -- 16-XVI cWW cW-W 18 X.G30 X.C555 G-C WC 19-XIX cWW cW-W 19 X.C31 X.G520 C-G WC 19-XIX cWW cW-W 20 X.C32 X.G519 C-G WC 19-XIX cWW cW-W 21 X.U33 X.A493 U-A rHoogsteen 24-XXIV tWH tW-M 22 X.A500 X.A495 A-A -- 05-V tHW tM-W 23 X.G35 X.C491 G-C WC 19-XIX cWW cW-W 24 X.G36 X.C490 G-C WC 19-XIX cWW cW-W 25 X.C37 X.G488 C-G WC 19-XIX cWW cW-W 26 X.A38 X.U487 A-U WC 20-XX cWW cW-W 27 X.C39 X.G486 C-G WC 19-XIX cWW cW-W 28 X.U40 X.A485 U-A WC 20-XX cWW cW-W 29 X.A41 X.U484 A-U WC 20-XX cWW cW-W 30 X.G42 X.C483 G-C WC 19-XIX cWW cW-W 31 X.A43 X.U482 A+U Hoogsteen 23-XXIII cHW cM+W 32 X.A44 X.U480 A-U WC 20-XX cWW cW-W 33 X.G45 X.C479 G-C WC 19-XIX cWW cW-W 34 X.A185 X.G218 A-G Imino 08-VIII cWW cW-W 35 X.C186 X.G217 C-G WC 19-XIX cWW cW-W 36 X.C187 X.G215 C-G WC 19-XIX cWW cW-W 37 X.C188 X.G214 C-G WC 19-XIX cWW cW-W 38 X.G189 X.C213 G-C WC 19-XIX cWW cW-W 39 X.G190 X.C212 G-C WC 19-XIX cWW cW-W 40 X.A191 X.C211 A-C -- -- cWW cW-W 41 X.G192 X.A210 G-A Sheared 11-XI tSH tm-M 42 X.A193 X.U209 A-U rHoogsteen 24-XXIV tHW tM-W 43 X.A194 X.A207 A+A -- 02-II tHH tM+M 44 X.C195 X.U206 C-U ~Sheared -- tHS tM-m 45 X.U196 X.U205 U-U -- 16-XVI cWW cW-W 46 X.G197 X.C204 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#3[1] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C46 X.G181 C-G WC 19-XIX cWW cW-W 2 X.C47 X.G180 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#4[5] bps=22 strand-1 5'-AACGACGUCCGAAUAUCGAUAU-3' bp-type .|||||||||.....||||||| strand-2 3'-AUGUUGCAGGAAGAAAGCUAUA-5' helix-form ..xx.AxA..x.xx.Ax.... 1 X.A64 X.A90 A+A -- 01-I tWW tW+W 2 X.A65 X.U89 A-U WC 20-XX cWW cW-W 3 X.C66 X.G88 C-G WC 19-XIX cWW cW-W 4 X.G67 X.U74 G-U Wobble 28-XXVIII cWW cW-W 5 X.A68 X.U59 A-U WC 20-XX cWW cW-W 6 X.C69 X.G58 C-G WC 19-XIX cWW cW-W 7 X.G70 X.C57 G-C WC 19-XIX cWW cW-W 8 X.U113 X.A56 U-A WC 20-XX cWW cW-W 9 X.C114 X.G55 C-G WC 19-XIX cWW cW-W 10 X.C115 X.G54 C-G WC 19-XIX cWW cW-W 11 X.G116 X.A53 G-A Sheared 11-XI tSH tm-M 12 X.A118 X.A52 A+A -- 02-II tHH tM+M 13 X.A117 X.G51 A-G Sheared 11-XI tHS tM-m 14 X.U119 X.A49 U+A Hoogsteen 23-XXIII cWH cW+M 15 X.A150 X.A179 A-A -- -- cWW cW-W 16 X.U151 X.A178 U-A WC 20-XX cWW cW-W 17 X.C152 X.G177 C-G WC 19-XIX cWW cW-W 18 X.G153 X.C175 G-C WC 19-XIX cWW cW-W 19 X.A154 X.U174 A-U WC 20-XX cWW cW-W 20 X.U155 X.A173 U-A WC 20-XX cWW cW-W 21 X.A156 X.U172 A-U WC 20-XX cWW cW-W 22 X.U157 X.A171 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#5[1] bps=10 strand-1 5'-GCUUUGGGGA-3' bp-type .||||||... strand-2 3'-AGAGACCUAG-5' helix-form ....AA... 1 X.G75 X.A110 G-A Imino 08-VIII cWW cW-W 2 X.C76 X.G109 C-G WC 19-XIX cWW cW-W 3 X.U77 X.A108 U-A WC 20-XX cWW cW-W 4 X.U78 X.G107 U-G Wobble 28-XXVIII cWW cW-W 5 X.U79 X.A106 U-A WC 20-XX cWW cW-W 6 X.G80 X.C105 G-C WC 19-XIX cWW cW-W 7 X.G81 X.C104 G-C WC 19-XIX cWW cW-W 8 X.G82 X.U103 G-U -- -- tWH tW-M 9 X.G83 X.A102 G+A -- -- tSW tm+W 10 X.A84 X.G101 A-G Sheared 11-XI tHS tM-m -------------------------------------------------------------------------- helix#6[2] bps=5 strand-1 5'-GCUAC-3' bp-type ||||| strand-2 3'-CGAUG-5' helix-form A.x. 1 X.G85 X.C97 G-C WC 19-XIX cWW cW-W 2 X.C86 X.G96 C-G WC 19-XIX cWW cW-W 3 X.U87 X.A95 U-A WC 20-XX cWW cW-W 4 X.A61 X.U93 A-U WC 20-XX cWW cW-W 5 X.C62 X.G92 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#7[2] bps=11 strand-1 5'-CCCAGCAUGAG-3' bp-type ||||||||||. strand-2 3'-GGGUUGUACUG-5' helix-form AAx....... 1 X.C127 X.G122 C-G WC 19-XIX cWW cW-W 2 X.C128 X.G121 C-G WC 19-XIX cWW cW-W 3 X.C129 X.G120 C-G WC 19-XIX cWW cW-W 4 X.A130 X.U149 A-U WC 20-XX cWW cW-W 5 X.G131 X.U148 G-U Wobble 28-XXVIII cWW cW-W 6 X.C132 X.G147 C-G WC 19-XIX cWW cW-W 7 X.A133 X.U146 A-U WC 20-XX cWW cW-W 8 X.U134 X.A145 U-A WC 20-XX cWW cW-W 9 X.G135 X.C144 G-C WC 19-XIX cWW cW-W 10 X.A136 X.U143 A-U WC 20-XX cWW cW-W 11 X.G137 X.G142 G-G -- -- tWH tW-M -------------------------------------------------------------------------- helix#8[5] bps=32 strand-1 5'-CGAGCGAAACGGGAAAGAGCCCAAACCAACAG-3' bp-type |..||.....||||....||||...||||||| strand-2 3'-GUGCGAUAUUCCCUUAAUCGGGUGGGGUUGUC-5' helix-form xx.A..x...A.Axxx.x.Axx......Ax. 1 X.C201 X.G251 C-G WC 19-XIX cWW cW-W 2 X.G253 X.U203 G+U -- -- tWW tW+W 3 X.A254 X.G250 A-G Sheared 11-XI tHS tM-m 4 X.G255 X.C249 G-C WC 19-XIX cWW cW-W 5 X.C256 X.G248 C-G WC 19-XIX cWW cW-W 6 X.G257 X.A247 G-A Sheared 11-XI tSH tm-M 7 X.A258 X.U246 A-U rHoogsteen 24-XXIV tHW tM-W 8 X.A259 X.A244 A+A -- 02-II tHH tM+M 9 X.A260 X.U243 A-U -- -- tH. tM-. 10 X.C261 X.U242 C-U -- -- tHW tM-W 11 X.G262 X.C241 G-C WC 19-XIX cWW cW-W 12 X.G263 X.C240 G-C WC 19-XIX cWW cW-W 13 X.G264 X.C239 G-C WC 19-XIX cWW cW-W 14 X.A265 X.U238 A-U WC 20-XX cWW cW-W 15 X.A476 X.U237 A+U rWC 21-XXI tWW tW+W 16 X.A236 X.A475 A+A -- 01-I tWW tW+W 17 X.G223 X.A474 G-A -- -- tWH tW-M 18 X.A224 X.U473 A-U rHoogsteen 24-XXIV tHW tM-W 19 X.G269 X.C472 G-C WC 19-XIX cWW cW-W 20 X.C270 X.G471 C-G WC 19-XIX cWW cW-W 21 X.C271 X.G470 C-G WC 19-XIX cWW cW-W 22 X.C272 X.G416 C-G WC 19-XIX cWW cW-W 23 X.A273 X.U298 A-U rHoogsteen 24-XXIV tHW tM-W 24 X.A274 X.G297 A-G Sheared 11-XI tHS tM-m 25 X.A275 X.G296 A-G Sheared 11-XI tHS tM-m 26 X.C276 X.G295 C-G WC 19-XIX cWW cW-W 27 X.C277 X.G294 C-G WC 19-XIX cWW cW-W 28 X.A278 X.U293 A-U WC 20-XX cWW cW-W 29 X.A279 X.U292 A-U WC 20-XX cWW cW-W 30 X.C280 X.G291 C-G WC 19-XIX cWW cW-W 31 X.A282 X.U289 A-U WC 20-XX cWW cW-W 32 X.G283 X.C288 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#9[1] bps=4 strand-1 5'-AGAA-3' bp-type .||. strand-2 3'-GCUA-5' helix-form xAx 1 X.A225 X.G235 A-G Sheared 11-XI tHS tM-m 2 X.G227 X.C234 G-C WC 19-XIX cWW cW-W 3 X.A228 X.U233 A-U WC 20-XX cWW cW-W 4 X.A229 X.A231 A-A -- -- cSW cm-W -------------------------------------------------------------------------- helix#10[1] bps=6 strand-1 5'-CACUCU-3' bp-type |||||. strand-2 3'-GUGAGU-5' helix-form A.... 1 X.C306 X.G409 C-G WC 19-XIX cWW cW-W 2 X.A307 X.U408 A-U WC 20-XX cWW cW-W 3 X.C308 X.G407 C-G WC 19-XIX cWW cW-W 4 X.U309 X.A406 U-A WC 20-XX cWW cW-W 5 X.C310 X.G405 C-G WC 19-XIX cWW cW-W 6 X.U311 X.U404 U-U -- -- cWW cW-W -------------------------------------------------------------------------- helix#11[0] bps=6 strand-1 5'-GAAAAC-3' bp-type .....| strand-2 5'-AAAAUG-3' helix-form x.xxx 1 X.G351 X.A372 G+A Linker -- tSS tm+m 2 X.A546 X.A523 A+A -- 02-II tHH tM+M 3 X.A547 X.A524 A+A -- -- tHH tM+M 4 X.A526 X.A550 A+A -- 01-I tWW tW+W 5 X.A525 X.U521 A-U rHoogsteen 24-XXIV tHW tM-W 6 X.C554 X.G527 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#12[2] bps=9 strand-1 5'-AGAUGAAUC-3' bp-type .|||||||| strand-2 3'-UCUACUUAG-5' helix-form x.AA.x.x 1 X.A353 X.U349 A-U rHoogsteen 24-XXIV tHW tM-W 2 X.G355 X.C348 G-C WC 19-XIX cWW cW-W 3 X.A356 X.U347 A-U WC 20-XX cWW cW-W 4 X.U357 X.A346 U-A WC 20-XX cWW cW-W 5 X.G358 X.C345 G-C WC 19-XIX cWW cW-W 6 X.A359 X.U344 A-U WC 20-XX cWW cW-W 7 X.A360 X.U377 A-U WC 20-XX cWW cW-W 8 X.U361 X.A376 U-A WC 20-XX cWW cW-W 9 X.C362 X.G366 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#13[3] bps=20 strand-1 5'-UGGAAAGCAGAAAAUGUUUC-3' bp-type .|||...|||..||||||.. strand-2 5'-ACCUGUAGUCGAUUACAGCA-3' helix-form x...xx....xx.....x. 1 X.U371 X.A375 U-A rHoogsteen 24-XXIV tWH tW-M 2 X.G370 X.C378 G-C WC 19-XIX cWW cW-W 3 X.G369 X.C379 G-C WC 19-XIX cWW cW-W 4 X.A368 X.U380 A-U WC 20-XX cWW cW-W 5 X.A367 X.G381 A-G Sheared 11-XI tHS tM-m 6 X.A365 X.U382 A-U -- -- cSW cm-W 7 X.G341 X.A383 G-A Sheared 11-XI tSH tm-M 8 X.C340 X.G384 C-G WC 19-XIX cWW cW-W 9 X.A339 X.U385 A-U WC 20-XX cWW cW-W 10 X.G338 X.C386 G-C WC 19-XIX cWW cW-W 11 X.A337 X.G387 A-G -- -- tHS tM-m 12 X.A389 X.A388 A-A Platform -- cWS cW-m 13 X.A390 X.U336 A-U WC 20-XX cWW cW-W 14 X.A391 X.U335 A-U WC 20-XX cWW cW-W 15 X.U392 X.A334 U-A WC 20-XX cWW cW-W 16 X.G393 X.C333 G-C WC 19-XIX cWW cW-W 17 X.U394 X.A332 U-A WC 20-XX cWW cW-W 18 X.U395 X.G331 U-G Wobble 28-XXVIII cWW cW-W 19 X.U397 X.C330 U-C -- 18-XVIII cWW cW-W 20 X.C398 X.A329 C-A -- -- cWW cW-W -------------------------------------------------------------------------- helix#14[5] bps=28 strand-1 5'-UCCUGGGGAGAUGGAAGGGCCAUCGCCG-3' bp-type |||.||||||||||..|||||||||... strand-2 3'-AGGUCUCCUCUACCAGCCUGGUGGCUAG-5' helix-form ..xxx.AAAxAAA.x.Ax.AAA.Axxx 1 X.U412 X.A305 U-A WC 20-XX cWW cW-W 2 X.C413 X.G304 C-G WC 19-XIX cWW cW-W 3 X.C414 X.G303 C-G WC 19-XIX cWW cW-W 4 X.U299 X.U415 U+U -- -- tWW tW+W 5 X.G300 X.C450 G-C WC 19-XIX cWW cW-W 6 X.G452 X.U467 G-U Wobble 28-XXVIII cWW cW-W 7 X.G453 X.C466 G-C WC 19-XIX cWW cW-W 8 X.G454 X.C465 G-C WC 19-XIX cWW cW-W 9 X.A455 X.U464 A-U WC 20-XX cWW cW-W 10 X.G456 X.C463 G-C WC 19-XIX cWW cW-W 11 X.A2434 X.U462 A-U WC 20-XX cWW cW-W 12 X.U2435 X.A461 U-A WC 20-XX cWW cW-W 13 X.G2436 X.C460 G-C WC 19-XIX cWW cW-W 14 X.G2437 X.C459 G-C WC 19-XIX cWW cW-W 15 X.A2438 X.A458 A-A ~Sheared -- tSH tm-M 16 X.A2439 X.G2432 A-G Sheared 11-XI tHS tM-m 17 X.G2440 X.C2431 G-C WC 19-XIX cWW cW-W 18 X.G2441 X.C2430 G-C WC 19-XIX cWW cW-W 19 X.G2442 X.U2428 G-U Wobble 28-XXVIII cWW cW-W 20 X.C2443 X.G2427 C-G WC 19-XIX cWW cW-W 21 X.C2444 X.G2426 C-G WC 19-XIX cWW cW-W 22 X.A2445 X.U2425 A-U WC 20-XX cWW cW-W 23 X.U2446 X.G2424 U-G Wobble 28-XXVIII cWW cW-W 24 X.C2447 X.G2423 C-G WC 19-XIX cWW cW-W 25 X.G2448 X.C2422 G-C WC 19-XIX cWW cW-W 26 X.C2449 X.U2420 C-U -- -- tWH tW-M 27 X.C2451 X.A2419 C+A -- -- tWW tW+W 28 X.G2456 X.G2418 G+G -- 04-IV tSS tm+m -------------------------------------------------------------------------- helix#15[1] bps=13 strand-1 5'-GAUUCCGUCGGAA-3' bp-type |..|||||||... strand-2 3'-CCGAGGCAGCAUA-5' helix-form x..A.A.AA..x 1 X.G457 X.C431 G-C WC 19-XIX cWW cW-W 2 X.A437 X.C429 A-C -- -- cHW cM-W 3 X.U438 X.G428 U-G -- -- cWW cW-W 4 X.U439 X.A427 U-A WC 20-XX cWW cW-W 5 X.C440 X.G426 C-G WC 19-XIX cWW cW-W 6 X.C441 X.G425 C-G WC 19-XIX cWW cW-W 7 X.G442 X.C424 G-C WC 19-XIX cWW cW-W 8 X.U443 X.A423 U-A WC 20-XX cWW cW-W 9 X.C444 X.G422 C-G WC 19-XIX cWW cW-W 10 X.G445 X.C421 G-C WC 19-XIX cWW cW-W 11 X.G446 X.A420 G-A Sheared 11-XI tSH tm-M 12 X.A447 X.U419 A-U rHoogsteen 24-XXIV tHW tM-W 13 X.A448 X.A469 A+A -- -- cWW cW+W -------------------------------------------------------------------------- helix#16[1] bps=6 strand-1 5'-AUACCG-3' bp-type ...||. strand-2 3'-AAGGGA-5' helix-form x..A. 1 X.A503 X.A517 A-A ~rHoogsteen -- tWH tW-M 2 X.U505 X.A516 U-A rHoogsteen 24-XXIV tWH tW-M 3 X.A506 X.G515 A-G -- -- tWH tW-M 4 X.C507 X.G514 C-G WC 19-XIX cWW cW-W 5 X.C508 X.G513 C-G WC 19-XIX cWW cW-W 6 X.G509 X.A512 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#17[1] bps=8 strand-1 5'-AGGGGAGU-3' bp-type .||||... strand-2 3'-GCCCCCGA-5' helix-form .AAAxxx 1 X.A537 X.G534 A-G Sheared 11-XI tHS tM-m 2 X.G538 X.C533 G-C WC 19-XIX cWW cW-W 3 X.G539 X.C532 G-C WC 19-XIX cWW cW-W 4 X.G540 X.C531 G-C WC 19-XIX cWW cW-W 5 X.G541 X.C530 G-C WC 19-XIX cWW cW-W 6 X.A542 X.C528 A-C -- -- cWS cW-m 7 X.G543 X.G551 G-G -- -- tWH tW-M 8 X.U544 X.A548 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#18[1] bps=7 strand-1 5'-AACCUGU-3' bp-type .|||||| strand-2 3'-UUGGACA-5' helix-form xAAA.x 1 X.A574 X.U2068 A-U rHoogsteen 24-XXIV tHW tM-W 2 X.A2050 X.U2067 A-U WC 20-XX cWW cW-W 3 X.C2051 X.G2066 C-G WC 19-XIX cWW cW-W 4 X.C2052 X.G2065 C-G WC 19-XIX cWW cW-W 5 X.U2053 X.A2064 U-A WC 20-XX cWW cW-W 6 X.G2054 X.C2063 G-C WC 19-XIX cWW cW-W 7 X.U605 X.A2060 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#19[2] bps=10 strand-1 5'-GUCAGAGCCC-3' bp-type ||||..|||| strand-2 3'-CGGUAGUGGG-5' helix-form ..A....A. 1 X.G578 X.C603 G-C WC 19-XIX cWW cW-W 2 X.U579 X.G602 U-G Wobble 28-XXVIII cWW cW-W 3 X.C580 X.G601 C-G WC 19-XIX cWW cW-W 4 X.A581 X.U600 A-U WC 20-XX cWW cW-W 5 X.G582 X.A599 G-A Sheared 11-XI tSH tm-M 6 X.A583 X.G598 A-G Sheared 11-XI tHS tM-m 7 X.G584 X.U597 G-U Wobble 28-XXVIII cWW cW-W 8 X.C585 X.G596 C-G WC 19-XIX cWW cW-W 9 X.C586 X.G595 C-G WC 19-XIX cWW cW-W 10 X.C587 X.G594 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#20[3] bps=19 strand-1 5'-GCCCGAAACCAGGUGGGAG-3' bp-type |||.|...||||||||||. strand-2 3'-UGGUCUAAGGUCCACCCUA-5' helix-form xA..x.x.AA...xxA.x 1 X.G630 X.U855 G-U Wobble 28-XXVIII cWW cW-W 2 X.C716 X.G854 C-G WC 19-XIX cWW cW-W 3 X.C717 X.G853 C-G WC 19-XIX cWW cW-W 4 X.C718 X.U852 C-U -- -- cWW cW-W 5 X.G719 X.C851 G-C WC 19-XIX cWW cW-W 6 X.A720 X.U848 A-U rHoogsteen 24-XXIV tHW tM-W 7 X.A721 X.A847 A+A -- -- tWW tW+W 8 X.A722 X.A845 A+A -- 01-I tWW tW+W 9 X.C723 X.G844 C-G WC 19-XIX cWW cW-W 10 X.C724 X.G843 C-G WC 19-XIX cWW cW-W 11 X.A725 X.U842 A-U WC 20-XX cWW cW-W 12 X.G726 X.C841 G-C WC 19-XIX cWW cW-W 13 X.G727 X.C840 G-C WC 19-XIX cWW cW-W 14 X.U728 X.A839 U-A WC 20-XX cWW cW-W 15 X.G820 X.C836 G-C WC 19-XIX cWW cW-W 16 X.G822 X.C832 G-C WC 19-XIX cWW cW-W 17 X.G823 X.C831 G-C WC 19-XIX cWW cW-W 18 X.A824 X.U830 A-U WC 20-XX cWW cW-W 19 X.G825 X.A828 G+A -- 10-X tSW tm+W -------------------------------------------------------------------------- helix#21[2] bps=14 strand-1 5'-UUACGAUUUGAUGC-3' bp-type .|||||||.||||| strand-2 3'-AAUGCUGGUUUAUG-5' helix-form x..AA.....A.. 1 X.U631 X.A715 U+A -- -- tWS tW+m 2 X.U632 X.A713 U-A WC 20-XX cWW cW-W 3 X.A633 X.U712 A-U WC 20-XX cWW cW-W 4 X.C634 X.G711 C-G WC 19-XIX cWW cW-W 5 X.G635 X.C710 G-C WC 19-XIX cWW cW-W 6 X.A636 X.U709 A-U WC 20-XX cWW cW-W 7 X.U637 X.G708 U-G Wobble 28-XXVIII cWW cW-W 8 X.U638 X.G707 U-G Wobble 28-XXVIII cWW cW-W 9 X.U639 X.U706 U-U -- -- cWW cW-W 10 X.G640 X.U705 G-U Wobble 28-XXVIII cWW cW-W 11 X.A641 X.U704 A-U WC 20-XX cWW cW-W 12 X.U642 X.A703 U-A WC 20-XX cWW cW-W 13 X.G643 X.U702 G-U Wobble 28-XXVIII cWW cW-W 14 X.C644 X.G701 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#22[2] bps=9 strand-1 5'-GGUUAGCAG-3' bp-type |||..|||. strand-2 3'-CCGAGUGUA-5' helix-form A..x...x 1 X.G647 X.C669 G-C WC 19-XIX cWW cW-W 2 X.G648 X.C668 G-C WC 19-XIX cWW cW-W 3 X.U649 X.G667 U-G Wobble 28-XXVIII cWW cW-W 4 X.U650 X.A666 U+A -- -- tWW tW+W 5 X.A652 X.G664 A-G Sheared 11-XI tHS tM-m 6 X.G653 X.U663 G-U Wobble 28-XXVIII cWW cW-W 7 X.C654 X.G662 C-G WC 19-XIX cWW cW-W 8 X.A655 X.U661 A-U WC 20-XX cWW cW-W 9 X.G656 X.A659 G+A Linker -- tSS tm+m -------------------------------------------------------------------------- helix#23[1] bps=3 strand-1 5'-GCG-3' bp-type ||. strand-2 3'-CGA-5' helix-form A. 1 X.G673 X.C680 G-C WC 19-XIX cWW cW-W 2 X.C674 X.G679 C-G WC 19-XIX cWW cW-W 3 X.G675 X.A678 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#24[1] bps=3 strand-1 5'-UCU-3' bp-type ||| strand-2 3'-GGG-5' helix-form .. 1 X.U684 X.G694 U-G Wobble 28-XXVIII cWW cW-W 2 X.C685 X.G693 C-G WC 19-XIX cWW cW-W 3 X.U686 X.G692 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#25[1] bps=12 strand-1 5'-CUACCCUUGGUC-3' bp-type ..|||||||||| strand-2 3'-AAUGGGAGUCAG-5' helix-form xxAA.A...Ax 1 X.C732 X.A1807 C-A -- -- cSW cm-W 2 X.U733 X.A730 U+A -- -- tWS tW+m 3 X.A734 X.U818 A-U WC 20-XX cWW cW-W 4 X.C735 X.G817 C-G WC 19-XIX cWW cW-W 5 X.C736 X.G816 C-G WC 19-XIX cWW cW-W 6 X.C737 X.G815 C-G WC 19-XIX cWW cW-W 7 X.U738 X.A814 U-A WC 20-XX cWW cW-W 8 X.U739 X.G813 U-G Wobble 28-XXVIII cWW cW-W 9 X.G740 X.U812 G-U Wobble 28-XXVIII cWW cW-W 10 X.G741 X.C811 G-C WC 19-XIX cWW cW-W 11 X.U742 X.A810 U-A WC 20-XX cWW cW-W 12 X.C743 X.G808 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#26[4] bps=24 strand-1 5'-CUGAAUGGAGACCGACCGCUUACG-3' bp-type .|||||...||||..||||||||. strand-2 3'-GACUUGAAGUUGGAAGGCGAGUGA-5' helix-form ...A.....x.A.x.A.xA.AAx 1 X.C764 X.G757 C-G -- -- cWW cW-W 2 X.U765 X.A756 U-A WC 20-XX cWW cW-W 3 X.G766 X.C755 G-C WC 19-XIX cWW cW-W 4 X.A767 X.U754 A-U WC 20-XX cWW cW-W 5 X.A768 X.U753 A-U WC 20-XX cWW cW-W 6 X.U769 X.G752 U-G Wobble 28-XXVIII cWW cW-W 7 X.G770 X.A751 G-A Sheared 11-XI tSH tm-M 8 X.G771 X.A750 G-A Sheared 11-XI tSH tm-M 9 X.A772 X.G749 A-G Sheared 11-XI tHS tM-m 10 X.G773 X.U748 G-U Wobble 28-XXVIII cWW cW-W 11 X.A775 X.U747 A-U WC 20-XX cWW cW-W 12 X.C776 X.G746 C-G WC 19-XIX cWW cW-W 13 X.C777 X.G745 C-G WC 19-XIX cWW cW-W 14 X.G778 X.A744 G-A Sheared 11-XI tSH tm-M 15 X.A780 X.A806 A-A ~Sheared -- tHS tM-m 16 X.C781 X.G805 C-G WC 19-XIX cWW cW-W 17 X.C782 X.G804 C-G WC 19-XIX cWW cW-W 18 X.G783 X.C803 G-C WC 19-XIX cWW cW-W 19 X.C785 X.G802 C-G WC 19-XIX cWW cW-W 20 X.U786 X.A801 U-A WC 20-XX cWW cW-W 21 X.U787 X.G800 U-G Wobble 28-XXVIII cWW cW-W 22 X.A788 X.U799 A-U WC 20-XX cWW cW-W 23 X.C789 X.G798 C-G WC 19-XIX cWW cW-W 24 X.G790 X.A795 G+A -- 10-X tSW tm+W -------------------------------------------------------------------------- helix#27[3] bps=15 strand-1 5'-GGCUAGCCUCAAGUU-3' bp-type ||||||||||||||. strand-2 3'-UCGAUUGGGGUUCAA-5' helix-form .AAAx.xA.AAAAx 1 X.G876 X.U871 G-U Wobble 28-XXVIII cWW cW-W 2 X.G877 X.C870 G-C WC 19-XIX cWW cW-W 3 X.C878 X.G869 C-G WC 19-XIX cWW cW-W 4 X.U879 X.A868 U-A WC 20-XX cWW cW-W 5 X.A880 X.U867 A-U WC 20-XX cWW cW-W 6 X.G881 X.U987 G-U Wobble 28-XXVIII cWW cW-W 7 X.C882 X.G986 C-G WC 19-XIX cWW cW-W 8 X.C883 X.G984 C-G WC 19-XIX cWW cW-W 9 X.U884 X.G983 U-G Wobble 28-XXVIII cWW cW-W 10 X.C885 X.G982 C-G WC 19-XIX cWW cW-W 11 X.A886 X.U981 A-U WC 20-XX cWW cW-W 12 X.A887 X.U980 A-U WC 20-XX cWW cW-W 13 X.G888 X.C979 G-C WC 19-XIX cWW cW-W 14 X.U889 X.A978 U-A WC 20-XX cWW cW-W 15 X.U892 X.A977 U+A Hoogsteen 23-XXIII cHW cM+W -------------------------------------------------------------------------- helix#28[3] bps=17 strand-1 5'-GAUUAUUGGAGAUAGAG-3' bp-type |||||||||.....||| strand-2 3'-UUAAUAACCGUAAGCUC-5' helix-form .AAAx.AAA.xx..xA 1 X.G893 X.U975 G-U Wobble 28-XXVIII cWW cW-W 2 X.A894 X.U974 A-U WC 20-XX cWW cW-W 3 X.U895 X.A973 U-A WC 20-XX cWW cW-W 4 X.U896 X.A972 U-A WC 20-XX cWW cW-W 5 X.A897 X.U971 A-U WC 20-XX cWW cW-W 6 X.U898 X.A969 U-A WC 20-XX cWW cW-W 7 X.U899 X.A968 U-A WC 20-XX cWW cW-W 8 X.G900 X.C967 G-C WC 19-XIX cWW cW-W 9 X.G901 X.C966 G-C WC 19-XIX cWW cW-W 10 X.A902 X.G965 A-G Imino 08-VIII cWW cW-W 11 X.G903 X.U964 G-U -- -- cW. cW-. 12 X.A2295 X.A963 A+A -- 02-II tHH tM+M 13 X.U905 X.A962 U-A rHoogsteen 24-XXIV tWH tW-M 14 X.A906 X.G961 A-G Sheared 11-XI tHS tM-m 15 X.G907 X.C960 G-C WC 19-XIX cWW cW-W 16 X.A908 X.U958 A-U WC 20-XX cWW cW-W 17 X.G909 X.C957 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#29[1] bps=10 strand-1 5'-CUGUUUGGAG-3' bp-type .||||||||. strand-2 3'-CACAGACUUG-5' helix-form xA...A..x 1 X.C912 X.C910 C+C -- -- cHS cM+m 2 X.U913 X.A954 U-A WC 20-XX cWW cW-W 3 X.G914 X.C953 G-C WC 19-XIX cWW cW-W 4 X.U915 X.A952 U-A WC 20-XX cWW cW-W 5 X.U916 X.G951 U-G Wobble 28-XXVIII cWW cW-W 6 X.U917 X.A950 U-A WC 20-XX cWW cW-W 7 X.G918 X.C949 G-C WC 19-XIX cWW cW-W 8 X.G919 X.U948 G-U Wobble 28-XXVIII cWW cW-W 9 X.A920 X.U947 A-U WC 20-XX cWW cW-W 10 X.G922 X.G944 G-G -- -- cWW cW-W -------------------------------------------------------------------------- helix#30[4] bps=33 strand-1 5'-AGUCCGUGUUCGAUAGGAGAGCGUUCUAAGGGC-3' bp-type .||||||||||....|||||||.|||||||.|| strand-2 3'-GUGGGUACAAGAAAGCCUCUCGUAAGAUUCGCG-5' helix-form x.....AAAAx.x..AAAA.x.x.A.A.A... 1 X.A1004 X.G1000 A-G Sheared 11-XI tHS tM-m 2 X.G1006 X.U999 G-U Wobble 28-XXVIII cWW cW-W 3 X.U1007 X.G998 U-G Wobble 28-XXVIII cWW cW-W 4 X.C1008 X.G997 C-G WC 19-XIX cWW cW-W 5 X.C1009 X.G996 C-G WC 19-XIX cWW cW-W 6 X.G1010 X.U995 G-U Wobble 28-XXVIII cWW cW-W 7 X.U1011 X.A994 U-A WC 20-XX cWW cW-W 8 X.G1012 X.C993 G-C WC 19-XIX cWW cW-W 9 X.U1013 X.A992 U-A WC 20-XX cWW cW-W 10 X.U1014 X.A991 U-A WC 20-XX cWW cW-W 11 X.C1015 X.G990 C-G WC 19-XIX cWW cW-W 12 X.G1016 X.A866 G-A Sheared 11-XI tSH tm-M 13 X.A1017 X.A865 A+A -- 02-II tHH tM+M 14 X.U1227 X.A864 U-A rHoogsteen 24-XXIV tWH tW-M 15 X.A1228 X.G863 A-G Sheared 11-XI tHS tM-m 16 X.G1229 X.C862 G-C WC 19-XIX cWW cW-W 17 X.G1230 X.C861 G-C WC 19-XIX cWW cW-W 18 X.A1231 X.U860 A-U WC 20-XX cWW cW-W 19 X.G1232 X.C859 G-C WC 19-XIX cWW cW-W 20 X.A1233 X.U858 A-U WC 20-XX cWW cW-W 21 X.G1234 X.C857 G-C WC 19-XIX cWW cW-W 22 X.C1235 X.G1288 C-G WC 19-XIX cWW cW-W 23 X.G1236 X.U1287 G-U -- -- cWW cW-W 24 X.U1237 X.A1285 U-A WC 20-XX cWW cW-W 25 X.U1238 X.A1284 U-A WC 20-XX cWW cW-W 26 X.C1239 X.G1283 C-G WC 19-XIX cWW cW-W 27 X.U1240 X.A1282 U-A WC 20-XX cWW cW-W 28 X.A1241 X.U1281 A-U WC 20-XX cWW cW-W 29 X.A1242 X.U1280 A-U WC 20-XX cWW cW-W 30 X.G1243 X.C1279 G-C WC 19-XIX cWW cW-W 31 X.G1244 X.G1278 G+G -- 06-VI cWH cW+M 32 X.G1245 X.C1277 G-C WC 19-XIX cWW cW-W 33 X.C1246 X.G1276 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#31[1] bps=5 strand-1 5'-AAGGG-3' bp-type ..||| strand-2 3'-AGCCC-5' helix-form .xA. 1 X.A1018 X.A1034 A-A ~Sheared -- tSH tm-M 2 X.A1019 X.G1033 A-G Sheared 11-XI tHS tM-m 3 X.G1020 X.C1031 G-C WC 19-XIX cWW cW-W 4 X.G1021 X.C1030 G-C WC 19-XIX cWW cW-W 5 X.G1022 X.C1029 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#32[1] bps=5 strand-1 5'-AGGGA-3' bp-type ..||. strand-2 3'-ACCCU-5' helix-form x.Ax 1 X.A1053 X.A1052 A+A Platform -- cHS cM+m 2 X.G1180 X.C1051 G+C ~Hoogsteen -- cHW cM+W 3 X.G1181 X.C1050 G-C WC 19-XIX cWW cW-W 4 X.G1182 X.C1049 G-C WC 19-XIX cWW cW-W 5 X.A1187 X.U1056 A+U Hoogsteen 23-XXIII cHW cM+W -------------------------------------------------------------------------- helix#33[0] bps=4 strand-1 5'-AGCG-3' bp-type ..|. strand-2 5'-UUGG-3' helix-form xx. 1 X.A1065 X.U1185 A-U -- -- tHW tM-W 2 X.G1066 X.U1067 G+U Platform -- cSH cm+M 3 X.C1184 X.G1068 C-G WC 19-XIX cWW cW-W 4 X.G1183 X.G1069 G+G -- 03-III tWW tW+W -------------------------------------------------------------------------- helix#34[3] bps=15 strand-1 5'-AAGGAGUGGCGUUGC-3' bp-type ..||.||||.||||| strand-2 3'-AGCCGCGUCACAGUG-5' helix-form ..A.x.....A... 1 X.A1072 X.A1170 A+A -- 02-II tHH tM+M 2 X.A1073 X.G1169 A-G Sheared 11-XI tHS tM-m 3 X.G1074 X.C1168 G-C WC 19-XIX cWW cW-W 4 X.G1075 X.C1167 G-C WC 19-XIX cWW cW-W 5 X.A1076 X.G1166 A-G -- -- cWW cW-W 6 X.G1078 X.C1165 G-C WC 19-XIX cWW cW-W 7 X.U1079 X.G1164 U-G Wobble 28-XXVIII cWW cW-W 8 X.G1080 X.U1163 G-U Wobble 28-XXVIII cWW cW-W 9 X.G1081 X.C1162 G-C WC 19-XIX cWW cW-W 10 X.C1082 X.A1161 C-A -- -- cWW cW-W 11 X.G1083 X.C1160 G-C WC 19-XIX cWW cW-W 12 X.U1084 X.A1159 U-A WC 20-XX cWW cW-W 13 X.U1085 X.G1158 U-G Wobble 28-XXVIII cWW cW-W 14 X.G1086 X.U1157 G-U Wobble 28-XXVIII cWW cW-W 15 X.C1087 X.G1156 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#35[1] bps=4 strand-1 5'-CAAC-3' bp-type |.|| strand-2 3'-GCUG-5' helix-form x.. 1 X.C1093 X.G2778 C-G WC 19-XIX cWW cW-W 2 X.A1094 X.C1153 A-C -- -- cWW cW-W 3 X.A1095 X.U1152 A-U WC 20-XX cWW cW-W 4 X.C1096 X.G1151 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#36[5] bps=27 strand-1 5'-AACAUAUUACCGAGCUGUGGAUUGUCC-3' bp-type .||||||||||..|||||||||||||| strand-2 3'-UUGUAUAAUGGAUCGACACCUAACAGG-5' helix-form xAAAA.xxA..xxA.xAAAxAAAAA. 1 X.A1186 X.U1063 A-U rHoogsteen 24-XXIV tHW tM-W 2 X.A1188 X.U1062 A-U WC 20-XX cWW cW-W 3 X.C1189 X.G1061 C-G WC 19-XIX cWW cW-W 4 X.A1190 X.U1060 A-U WC 20-XX cWW cW-W 5 X.U1191 X.A1059 U-A WC 20-XX cWW cW-W 6 X.A1192 X.U1058 A-U WC 20-XX cWW cW-W 7 X.U1193 X.A1057 U-A WC 20-XX cWW cW-W 8 X.U1194 X.A1055 U-A WC 20-XX cWW cW-W 9 X.A1195 X.U1048 A-U WC 20-XX cWW cW-W 10 X.C1196 X.G1047 C-G WC 19-XIX cWW cW-W 11 X.C1197 X.G1046 C-G WC 19-XIX cWW cW-W 12 X.G1198 X.A1045 G-A Sheared 11-XI tSH tm-M 13 X.A1199 X.U1043 A-U rHoogsteen 24-XXIV tHW tM-W 14 X.G1201 X.C1042 G-C WC 19-XIX cWW cW-W 15 X.C1202 X.G1041 C-G WC 19-XIX cWW cW-W 16 X.U1203 X.A1040 U-A WC 20-XX cWW cW-W 17 X.G1204 X.C1038 G-C WC 19-XIX cWW cW-W 18 X.U1205 X.A1037 U-A WC 20-XX cWW cW-W 19 X.G1206 X.C1036 G-C WC 19-XIX cWW cW-W 20 X.G1207 X.C1035 G-C WC 19-XIX cWW cW-W 21 X.A1208 X.U1224 A-U WC 20-XX cWW cW-W 22 X.U1209 X.A1223 U-A WC 20-XX cWW cW-W 23 X.U1210 X.A1222 U-A WC 20-XX cWW cW-W 24 X.G1211 X.C1221 G-C WC 19-XIX cWW cW-W 25 X.U1212 X.A1220 U-A WC 20-XX cWW cW-W 26 X.C1213 X.G1219 C-G WC 19-XIX cWW cW-W 27 X.C1214 X.G1218 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#37[2] bps=12 strand-1 5'-GAAGCAUGUUCG-3' bp-type ...||||||||. strand-2 3'-AGGUGUACAGGA-5' helix-form ....AAAxx.. 1 X.G1250 X.A1275 G-A Sheared 11-XI tSH tm-M 2 X.A1251 X.G1274 A-G Sheared 11-XI tHS tM-m 3 X.A1252 X.G1273 A-G Sheared 11-XI tHS tM-m 4 X.G1253 X.U1272 G-U Wobble 28-XXVIII cWW cW-W 5 X.C1254 X.G1271 C-G WC 19-XIX cWW cW-W 6 X.A1255 X.U1270 A-U WC 20-XX cWW cW-W 7 X.U1256 X.A1269 U-A WC 20-XX cWW cW-W 8 X.G1257 X.C1268 G-C WC 19-XIX cWW cW-W 9 X.U590 X.A1267 U-A WC 20-XX cWW cW-W 10 X.U1259 X.G1266 U-G Wobble 28-XXVIII cWW cW-W 11 X.C1260 X.G1265 C-G WC 19-XIX cWW cW-W 12 X.G1261 X.A1264 G-A -- -- tWH tW-M -------------------------------------------------------------------------- helix#38[1] bps=13 strand-1 5'-AAGCCGGUGUGUU-3' bp-type ..|||||||.... strand-2 3'-AGCGGCCACUAAA-5' helix-form xx.AAAAx..xx 1 X.A1289 X.A629 A-A ~rHoogsteen -- tWH tW-M 2 X.A1292 X.G628 A-G Sheared 11-XI tHS tM-m 3 X.G1294 X.C627 G-C WC 19-XIX cWW cW-W 4 X.C1295 X.G626 C-G WC 19-XIX cWW cW-W 5 X.C1296 X.G625 C-G WC 19-XIX cWW cW-W 6 X.G1297 X.C624 G-C WC 19-XIX cWW cW-W 7 X.G1298 X.C623 G-C WC 19-XIX cWW cW-W 8 X.U1299 X.A622 U-A WC 20-XX cWW cW-W 9 X.G1300 X.C2044 G-C WC 19-XIX cWW cW-W 10 X.U1301 X.U2043 U-U -- 16-XVI cWW cW-W 11 X.G1302 X.A2042 G-A Sheared 11-XI tSH tm-M 12 X.U792 X.A2041 U-A -- -- cWS cW-m 13 X.U2640 X.A2040 U+A rWC 21-XXI tWW tW+W -------------------------------------------------------------------------- helix#39[6] bps=32 strand-1 5'-UAGCCGAGACUCUCGUUGAGAAGGCCCAAGCG-3' bp-type ..||||||.||||||||.|||.|||||||||| strand-2 3'-GGUGGCUCAGAGAGCAACUCUUCCGGGUUUGC-5' helix-form x..xAA.x.AAAAAAAxxAxxxxA.....xA 1 X.U1305 X.G1304 U+G Platform -- cHS cM+m 2 X.A1306 X.G2039 A-G Sheared 11-XI tHS tM-m 3 X.G1307 X.U2038 G-U Wobble 28-XXVIII cWW cW-W 4 X.C1308 X.G2037 C-G WC 19-XIX cWW cW-W 5 X.C1692 X.G2036 C-G WC 19-XIX cWW cW-W 6 X.G1693 X.C2035 G-C WC 19-XIX cWW cW-W 7 X.A1694 X.U2034 A-U WC 20-XX cWW cW-W 8 X.G1695 X.C2033 G-C WC 19-XIX cWW cW-W 9 X.A1699 X.A2032 A-A ~Sheared -- tHS tM-m 10 X.C1700 X.G2031 C-G WC 19-XIX cWW cW-W 11 X.U1701 X.A2030 U-A WC 20-XX cWW cW-W 12 X.C1702 X.G2029 C-G WC 19-XIX cWW cW-W 13 X.U1703 X.A2028 U-A WC 20-XX cWW cW-W 14 X.C1704 X.G2027 C-G WC 19-XIX cWW cW-W 15 X.G1705 X.C2026 G-C WC 19-XIX cWW cW-W 16 X.U1706 X.A2025 U-A WC 20-XX cWW cW-W 17 X.U1707 X.A2024 U-A WC 20-XX cWW cW-W 18 X.G2019 X.C2023 G-C -- -- cWW cW-W 19 X.A1709 X.U2022 A-U WC 20-XX cWW cW-W 20 X.G1710 X.C2021 G-C WC 19-XIX cWW cW-W 21 X.A1713 X.U2020 A-U WC 20-XX cWW cW-W 22 X.A1712 X.U2018 A-U rHoogsteen 24-XXIV tHW tM-W 23 X.G1718 X.C2017 G-C WC 19-XIX cWW cW-W 24 X.G1791 X.C2015 G-C WC 19-XIX cWW cW-W 25 X.C1792 X.G2014 C-G WC 19-XIX cWW cW-W 26 X.C1793 X.G2013 C-G WC 19-XIX cWW cW-W 27 X.C1794 X.G2012 C-G WC 19-XIX cWW cW-W 28 X.A1795 X.U2011 A-U WC 20-XX cWW cW-W 29 X.A1796 X.U2010 A-U WC 20-XX cWW cW-W 30 X.G1797 X.U2009 G-U Wobble 28-XXVIII cWW cW-W 31 X.C1798 X.G2007 C-G WC 19-XIX cWW cW-W 32 X.G1799 X.C2006 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#40[0] bps=2 strand-1 5'-UG-3' bp-type .. strand-2 5'-UC-3' helix-form x 1 X.U1325 X.U1363 U+U -- 13-XIII tWW tW+W 2 X.G1691 X.C1364 G+C -- 29-XXIX tSW tm+W -------------------------------------------------------------------------- helix#41[3] bps=15 strand-1 5'-UUCCGAGUCAUGAUG-3' bp-type .|||..|||.|||.. strand-2 3'-UAGGAUCAGUACUUA-5' helix-form xxA.x...xxxA.. 1 X.U1349 X.U1377 U+U -- -- tWW tW+W 2 X.U1350 X.A1647 U-A WC 20-XX cWW cW-W 3 X.C1648 X.G1347 C-G WC 19-XIX cWW cW-W 4 X.C1649 X.G1346 C-G WC 19-XIX cWW cW-W 5 X.G1650 X.A1345 G-A Sheared 11-XI tSH tm-M 6 X.A1666 X.U1343 A-U -- -- cWW cW-W 7 X.G1667 X.C1342 G-C WC 19-XIX cWW cW-W 8 X.U1668 X.A1341 U-A WC 20-XX cWW cW-W 9 X.C1669 X.G1340 C-G WC 19-XIX cWW cW-W 10 X.A1685 X.U1338 A+U rWC 21-XXI tWW tW+W 11 X.A1671 X.U1683 A-U WC 20-XX cWW cW-W 12 X.G1672 X.C1682 G-C WC 19-XIX cWW cW-W 13 X.A1673 X.U1681 A-U WC 20-XX cWW cW-W 14 X.U1674 X.U1680 U-U -- 16-XVI cWW cW-W 15 X.G1675 X.A1679 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#42[2] bps=8 strand-1 5'-CCAGAGGG-3' bp-type |||||||| strand-2 3'-GGUCUCCC-5' helix-form .AAA.x. 1 X.C1351 X.G1375 C-G WC 19-XIX cWW cW-W 2 X.C1352 X.G1374 C-G WC 19-XIX cWW cW-W 3 X.A1353 X.U1373 A-U WC 20-XX cWW cW-W 4 X.G1354 X.C1372 G-C WC 19-XIX cWW cW-W 5 X.A1355 X.U1371 A-U WC 20-XX cWW cW-W 6 X.G1356 X.C1370 G-C WC 19-XIX cWW cW-W 7 X.G1360 X.C1368 G-C WC 19-XIX cWW cW-W 8 X.G1361 X.C1367 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#43[2] bps=12 strand-1 5'-UACCCGUCCACC-3' bp-type ..|||||||||| strand-2 3'-GUGGGCAGGUGG-5' helix-form xxAAAAAxAAA 1 X.U1366 X.G1320 U-G -- -- cWS cW-m 2 X.A1323 X.U1319 A-U rHoogsteen 24-XXIV tHW tM-W 3 X.C1326 X.G1318 C-G WC 19-XIX cWW cW-W 4 X.C1327 X.G1317 C-G WC 19-XIX cWW cW-W 5 X.C1328 X.G1316 C-G WC 19-XIX cWW cW-W 6 X.G1329 X.C1315 G-C WC 19-XIX cWW cW-W 7 X.U1330 X.A1314 U-A WC 20-XX cWW cW-W 8 X.C1331 X.G1313 C-G WC 19-XIX cWW cW-W 9 X.C1332 X.G1689 C-G WC 19-XIX cWW cW-W 10 X.A1333 X.U1688 A-U WC 20-XX cWW cW-W 11 X.C1334 X.G1687 C-G WC 19-XIX cWW cW-W 12 X.C1335 X.G1686 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#44[1] bps=5 strand-1 5'-ACGGG-3' bp-type .|||| strand-2 3'-UGCCC-5' helix-form x... 1 X.A1379 X.U1646 A-U rHoogsteen 24-XXIV tHW tM-W 2 X.C1382 X.G1645 C-G WC 19-XIX cWW cW-W 3 X.G1383 X.C1644 G-C WC 19-XIX cWW cW-W 4 X.G1384 X.C1643 G-C WC 19-XIX cWW cW-W 5 X.G1385 X.C1642 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#45[1] bps=4 strand-1 5'-CCUA-3' bp-type ||.| strand-2 3'-GGAU-5' helix-form .x. 1 X.C1387 X.G1418 C-G WC 19-XIX cWW cW-W 2 X.C1388 X.G1417 C-G WC 19-XIX cWW cW-W 3 X.U1389 X.A1415 U-A rHoogsteen 24-XXIV tWH tW-M 4 X.A1390 X.U1416 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#46[4] bps=22 strand-1 5'-AGCUUGGUGGUGGGAGAGAAAU-3' bp-type .|||..|||||.||...||||. strand-2 3'-GCGGACCACCACCCCAUCUUUC-5' helix-form .A.xxx...A.xA..xxAA.. 1 X.A1391 X.G1414 A-G Sheared 11-XI tHS tM-m 2 X.G1392 X.C1413 G-C WC 19-XIX cWW cW-W 3 X.C1393 X.G1412 C-G WC 19-XIX cWW cW-W 4 X.U1394 X.G1411 U-G Wobble 28-XXVIII cWW cW-W 5 X.U1409 X.A1396 U-A rHoogsteen 24-XXIV tWH tW-M 6 X.G1397 X.C2241 G+C -- -- tWW tW+W 7 X.G2242 X.C2236 G-C WC 19-XIX cWW cW-W 8 X.U2243 X.A2235 U-A WC 20-XX cWW cW-W 9 X.G2244 X.C2234 G-C WC 19-XIX cWW cW-W 10 X.G2245 X.C2233 G-C WC 19-XIX cWW cW-W 11 X.U2246 X.A2232 U-A WC 20-XX cWW cW-W 12 X.G2247 X.C2231 G-C ~Wobble -- cWW cW-W 13 X.G2248 X.C2229 G-C WC 19-XIX cWW cW-W 14 X.G2249 X.C2228 G-C WC 19-XIX cWW cW-W 15 X.A2250 X.C2227 A-C ~Wobble -- cWW cW-W 16 X.G2251 X.A2226 G-A Sheared 11-XI tSH tm-M 17 X.A2252 X.U2224 A-U rHoogsteen 24-XXIV tHW tM-W 18 X.G2120 X.C2223 G-C WC 19-XIX cWW cW-W 19 X.A2121 X.U2222 A-U WC 20-XX cWW cW-W 20 X.A2122 X.U2221 A-U WC 20-XX cWW cW-W 21 X.A2123 X.U2220 A-U WC 20-XX cWW cW-W 22 X.U2124 X.C2219 U-C -- 18-XVIII cWW cW-W -------------------------------------------------------------------------- helix#47[1] bps=4 strand-1 5'-GCCG-3' bp-type |||. strand-2 3'-CGGA-5' helix-form AA. 1 X.G1398 X.C1407 G-C WC 19-XIX cWW cW-W 2 X.C1399 X.G1406 C-G WC 19-XIX cWW cW-W 3 X.C1400 X.G1405 C-G WC 19-XIX cWW cW-W 4 X.G1401 X.A1404 G-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#48[3] bps=15 strand-1 5'-UACCUGUACCACCUA-3' bp-type ..||||||||||||| strand-2 3'-UUGGACAUGGUGGAU-5' helix-form xxAAA.x.xAA... 1 X.U1431 X.U1378 U+U -- -- c.H c.+M 2 X.A1432 X.U1427 A-U rHoogsteen 24-XXIV tHW tM-W 3 X.C1435 X.G1426 C-G WC 19-XIX cWW cW-W 4 X.C1436 X.G1425 C-G WC 19-XIX cWW cW-W 5 X.U1437 X.A1424 U-A WC 20-XX cWW cW-W 6 X.G1438 X.C1423 G-C WC 19-XIX cWW cW-W 7 X.U1439 X.A1422 U-A WC 20-XX cWW cW-W 8 X.A1440 X.U1381 A-U WC 20-XX cWW cW-W 9 X.C1441 X.G1380 C-G WC 19-XIX cWW cW-W 10 X.C1442 X.G1641 C-G WC 19-XIX cWW cW-W 11 X.A1443 X.U1640 A-U WC 20-XX cWW cW-W 12 X.C1444 X.G1639 C-G WC 19-XIX cWW cW-W 13 X.C1445 X.G1638 C-G WC 19-XIX cWW cW-W 14 X.U1446 X.A1637 U-A WC 20-XX cWW cW-W 15 X.A1447 X.U1636 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#49[1] bps=3 strand-1 5'-AUC-3' bp-type .|| strand-2 3'-UAG-5' helix-form .. 1 X.A1459 X.U1629 A-U -- -- cWW cW-W 2 X.U1460 X.A1628 U-A WC 20-XX cWW cW-W 3 X.C1461 X.G1627 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#50[1] bps=8 strand-1 5'-AGGGGGGA-3' bp-type .||||... strand-2 3'-ACUCCGAA-5' helix-form x..A... 1 X.A1463 X.A1539 A-A -- -- cWW cW-W 2 X.G1465 X.C1624 G-C WC 19-XIX cWW cW-W 3 X.G1466 X.U1623 G-U Wobble 28-XXVIII cWW cW-W 4 X.G1467 X.C1622 G-C WC 19-XIX cWW cW-W 5 X.G1468 X.C1621 G-C WC 19-XIX cWW cW-W 6 X.G1469 X.G1620 G-G -- -- tSH tm-M 7 X.G1470 X.A1619 G-A Sheared 11-XI tSH tm-M 8 X.A1471 X.A1618 A+A -- 02-II tHH tM+M -------------------------------------------------------------------------- helix#51[2] bps=9 strand-1 5'-AGCAGAGGC-3' bp-type ..|||..|| strand-2 3'-AUGUCUUCG-5' helix-form x...xx.. 1 X.A1514 X.A1567 A-A ~Sheared -- tHS tM-m 2 X.G1515 X.U1565 G-U -- -- cWW cW-W 3 X.C1516 X.G1564 C-G WC 19-XIX cWW cW-W 4 X.A1517 X.U1563 A-U WC 20-XX cWW cW-W 5 X.G1518 X.C1562 G-C WC 19-XIX cWW cW-W 6 X.A1521 X.U1519 A+U -- -- cHW cM+W 7 X.G1522 X.U1558 G-U -- -- cWW cW-W 8 X.G1523 X.C1557 G-C WC 19-XIX cWW cW-W 9 X.C1524 X.G1556 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#52[0] bps=2 strand-1 5'-GA-3' bp-type || strand-2 5'-CU-3' helix-form x 1 X.G1528 X.C1547 G-C WC 19-XIX cWW cW-W 2 X.A1530 X.U1545 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#53[0] bps=3 strand-1 5'-GGG-3' bp-type |.. strand-2 3'-CUU-5' helix-form .x 1 X.G1570 X.C1511 G-C WC 19-XIX cWW cW-W 2 X.G1571 X.U1510 G-U -- -- cWW cW-W 3 X.G1572 X.U1594 G-U -- -- cWW cW-W -------------------------------------------------------------------------- helix#54[2] bps=13 strand-1 5'-UUGAUCAACUGCC-3' bp-type .|..||..||||| strand-2 3'-GGGAAGGUGACGG-5' helix-form x..x..x..A.x 1 X.U1597 X.G1487 U-G -- -- cWW cW-W 2 X.U1598 X.G1485 U-G Wobble 28-XXVIII cWW cW-W 3 X.G1599 X.G1484 G-G -- -- cWW cW-W 4 X.A1600 X.A1483 A-A ~Sheared -- tSH tm-M 5 X.U1603 X.A1481 U-A WC 20-XX cWW cW-W 6 X.C1604 X.G1480 C-G WC 19-XIX cWW cW-W 7 X.A1605 X.G1479 A-G Imino 08-VIII cWW cW-W 8 X.A1607 X.U1477 A-U -- -- cWW cW-W 9 X.C1608 X.G1476 C-G WC 19-XIX cWW cW-W 10 X.U1609 X.A1475 U-A WC 20-XX cWW cW-W 11 X.G1610 X.C1474 G-C WC 19-XIX cWW cW-W 12 X.C1611 X.G1473 C-G WC 19-XIX cWW cW-W 13 X.C1612 X.G1615 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#55[1] bps=3 strand-1 5'-ACC-3' bp-type .|| strand-2 3'-UGG-5' helix-form xA 1 X.A1652 X.U1665 A-U rHoogsteen 24-XXIV tHW tM-W 2 X.C1655 X.G1664 C-G WC 19-XIX cWW cW-W 3 X.C1656 X.G1663 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#56[1] bps=12 strand-1 5'-GGGAAAGGGGUU-3' bp-type .|....|||||. strand-2 3'-UCAAUGCCCCAA-5' helix-form ...x...A..x 1 X.G1739 X.U1736 G+U -- -- tWW tW+W 2 X.G1740 X.C1735 G-C WC 19-XIX cWW cW-W 3 X.G1741 X.A1734 G-A Sheared 11-XI tSH tm-M 4 X.A1742 X.A1733 A+A -- 02-II tHH tM+M 5 X.A1744 X.U1732 A-U -- -- tHS tM-m 6 X.A1745 X.G1731 A-G Sheared 11-XI tHS tM-m 7 X.G1746 X.C1730 G-C WC 19-XIX cWW cW-W 8 X.G1747 X.C1729 G-C WC 19-XIX cWW cW-W 9 X.G1748 X.C1728 G-C WC 19-XIX cWW cW-W 10 X.G1749 X.C1727 G-C WC 19-XIX cWW cW-W 11 X.U1750 X.A1726 U-A WC 20-XX cWW cW-W 12 X.U1784 X.A1789 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#57[1] bps=3 strand-1 5'-GGU-3' bp-type .|| strand-2 3'-CCG-5' helix-form .. 1 X.G1760 X.C1769 G+C -- -- tWW tW+W 2 X.G1761 X.C1768 G-C WC 19-XIX cWW cW-W 3 X.U1762 X.G1767 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#58[1] bps=6 strand-1 5'-AGAGCC-3' bp-type |||||| strand-2 3'-UCUCGG-5' helix-form AA..x 1 X.A1774 X.U1755 A-U WC 20-XX cWW cW-W 2 X.G1775 X.C1754 G-C WC 19-XIX cWW cW-W 3 X.A1776 X.U1753 A-U WC 20-XX cWW cW-W 4 X.G1777 X.C1752 G-C WC 19-XIX cWW cW-W 5 X.C1778 X.G1751 C-G WC 19-XIX cWW cW-W 6 X.C1779 X.G1783 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#59[2] bps=12 strand-1 5'-AACAGAACGCCU-3' bp-type .||.|.|||||. strand-2 3'-UUGUCAUGCGGA-5' helix-form x.xxxxxAA.x 1 X.A1812 X.U1805 A-U rHoogsteen 24-XXIV tHW tM-W 2 X.A1814 X.U1804 A-U WC 20-XX cWW cW-W 3 X.C1815 X.G1803 C-G WC 19-XIX cWW cW-W 4 X.A809 X.U1802 A+U Hoogsteen 23-XXIII cHW cM+W 5 X.G774 X.C1801 G-C WC 19-XIX cWW cW-W 6 X.A2004 X.A1800 A+A -- -- tWS tW+m 7 X.A1856 X.U1737 A-U WC 20-XX cWW cW-W 8 X.C1857 X.G2002 C-G WC 19-XIX cWW cW-W 9 X.G1858 X.C2001 G-C WC 19-XIX cWW cW-W 10 X.C1859 X.G2000 C-G WC 19-XIX cWW cW-W 11 X.C1860 X.G1999 C-G WC 19-XIX cWW cW-W 12 X.U1861 X.A1997 U+A Hoogsteen 23-XXIII cWH cW+M -------------------------------------------------------------------------- helix#60[1] bps=8 strand-1 5'-AGGUCUCU-3' bp-type .||||||| strand-2 3'-GUCGGGGA-5' helix-form ....... 1 X.A1818 X.G1855 A-G Sheared 11-XI tHS tM-m 2 X.G1819 X.U1854 G-U Wobble 28-XXVIII cWW cW-W 3 X.G1820 X.C1853 G-C WC 19-XIX cWW cW-W 4 X.U1821 X.G1852 U-G Wobble 28-XXVIII cWW cW-W 5 X.C1822 X.G1851 C-G WC 19-XIX cWW cW-W 6 X.U1823 X.G1850 U-G Wobble 28-XXVIII cWW cW-W 7 X.C1824 X.G1849 C-G WC 19-XIX cWW cW-W 8 X.U1825 X.A1848 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#61[1] bps=8 strand-1 5'-GCAAACCG-3' bp-type ....|||. strand-2 3'-UGAGUGGA-5' helix-form .x..A.. 1 X.G1826 X.U1845 G+U -- -- tWS tW+m 2 X.C1827 X.G1844 C+G rWC 22-XXII tWW tW+W 3 X.A1829 X.A1842 A+A -- -- tHH tM+M 4 X.A1830 X.G1841 A-G Sheared 11-XI tHS tM-m 5 X.A1831 X.U1840 A-U WC 20-XX cWW cW-W 6 X.C1832 X.G1839 C-G WC 19-XIX cWW cW-W 7 X.C1833 X.G1838 C-G WC 19-XIX cWW cW-W 8 X.G1834 X.A1837 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#62[6] bps=31 strand-1 5'-GGAGCUAGAAUCGAGCCCCAGUACGGGUAGC-3' bp-type |..||||...||..||||||||||||...|| strand-2 3'-CGUUGGUGGGAGAUUGGGGUCGUGCCGAGCG-5' helix-form xx....xx....x.AAx.AA.x.x.xx..x 1 X.G1900 X.C1895 G-C WC 19-XIX cWW cW-W 2 X.G1902 X.G1894 G-G -- -- cSW cm-W 3 X.A1904 X.U1892 A-U -- -- tHW tM-W 4 X.G1905 X.U1891 G-U Wobble 28-XXVIII cWW cW-W 5 X.C1906 X.G1890 C-G WC 19-XIX cWW cW-W 6 X.U1907 X.G1889 U-G Wobble 28-XXVIII cWW cW-W 7 X.A1908 X.U1888 A-U WC 20-XX cWW cW-W 8 X.G1910 X.G1887 G-G -- -- cSW cm-W 9 X.A1911 X.G1885 A-G Sheared 11-XI tHS tM-m 10 X.A1912 X.G1884 A-G Sheared 11-XI tHS tM-m 11 X.U1913 X.A1883 U-A WC 20-XX cWW cW-W 12 X.C1914 X.G1882 C-G WC 19-XIX cWW cW-W 13 X.G1915 X.A1881 G+A -- -- tHH tM+M 14 X.A1917 X.U1879 A-U -- -- tHW tM-W 15 X.G1918 X.U1878 G-U Wobble 28-XXVIII cWW cW-W 16 X.C1919 X.G1877 C-G WC 19-XIX cWW cW-W 17 X.C1920 X.G1876 C-G WC 19-XIX cWW cW-W 18 X.C1921 X.G1873 C-G WC 19-XIX cWW cW-W 19 X.C1922 X.G1872 C-G WC 19-XIX cWW cW-W 20 X.A1923 X.U1871 A-U WC 20-XX cWW cW-W 21 X.G1924 X.C1870 G-C WC 19-XIX cWW cW-W 22 X.U1925 X.G1869 U-G Wobble 28-XXVIII cWW cW-W 23 X.A1928 X.U1868 A-U WC 20-XX cWW cW-W 24 X.C1929 X.G1867 C-G WC 19-XIX cWW cW-W 25 X.G1930 X.C1864 G-C WC 19-XIX cWW cW-W 26 X.G1931 X.C1863 G-C WC 19-XIX cWW cW-W 27 X.G1957 X.G1862 G-G -- -- cSW cm-W 28 X.U1958 X.A1996 U-A rHoogsteen 24-XXIV tWH tW-M 29 X.A1959 X.G1995 A-G Sheared 11-XI tHS tM-m 30 X.G1960 X.C1994 G-C WC 19-XIX cWW cW-W 31 X.C1961 X.G1991 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#63[1] bps=9 strand-1 5'-CUGUCGGGU-3' bp-type ..|||||.. strand-2 3'-UACAGCCUA-5' helix-form xx.AA..x 1 X.C1969 X.U1967 C+U -- -- tWS tW+m 2 X.U1970 X.A1963 U+A Hoogsteen 23-XXIII cWH cW+M 3 X.G1972 X.C1988 G-C WC 19-XIX cWW cW-W 4 X.U1973 X.A1987 U-A WC 20-XX cWW cW-W 5 X.C1974 X.G1986 C-G WC 19-XIX cWW cW-W 6 X.G1975 X.C1985 G-C WC 19-XIX cWW cW-W 7 X.G1976 X.C1984 G-C WC 19-XIX cWW cW-W 8 X.G1977 X.U1983 G-U -- -- cW. cW-. 9 X.U1978 X.A1980 U-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#64[0] bps=8 strand-1 5'-AAUGAAUA-3' bp-type .|.|.|.| strand-2 3'-UUCCGUGU-5' helix-form x..Axx. 1 X.A2057 X.U611 A-U -- -- tH. tM-. 2 X.A618 X.U609 A-U WC 20-XX cWW cW-W 3 X.U619 X.C608 U-C -- 18-XVIII cWW cW-W 4 X.G620 X.C607 G-C WC 19-XIX cWW cW-W 5 X.A621 X.G606 A-G Imino 08-VIII cWW cW-W 6 X.A2045 X.U576 A-U WC 20-XX cWW cW-W 7 X.U2046 X.G2062 U-G -- -- c.W c.-W 8 X.A2047 X.U2061 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#65[1] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 X.G2083 X.C2639 G-C WC 19-XIX cWW cW-W 2 X.G2084 X.C2638 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#66[6] bps=28 strand-1 5'-GCCCCGGGAGCUACUGUAGCCUGAUAUU-3' bp-type ..|||||||||||||||.||.||||||. strand-2 3'-AAGGGCCCUCGAUGACGGCGAACUGUGA-5' helix-form xx...x.xAA.x.A..x.AAA.A.... 1 X.G2088 X.A2478 G-A Imino 08-VIII cWW cW-W 2 X.C2090 X.A2477 C-A ~Wobble -- cWW cW-W 3 X.C2091 X.G2473 C-G WC 19-XIX cWW cW-W 4 X.C2092 X.G2472 C-G WC 19-XIX cWW cW-W 5 X.C2093 X.G2471 C-G WC 19-XIX cWW cW-W 6 X.G2094 X.C2470 G-C WC 19-XIX cWW cW-W 7 X.G2096 X.C2469 G-C WC 19-XIX cWW cW-W 8 X.G2097 X.C2468 G-C WC 19-XIX cWW cW-W 9 X.A2098 X.U2465 A-U WC 20-XX cWW cW-W 10 X.G2099 X.C2464 G-C WC 19-XIX cWW cW-W 11 X.C2100 X.G2463 C-G WC 19-XIX cWW cW-W 12 X.U2101 X.A2462 U-A WC 20-XX cWW cW-W 13 X.A2104 X.U2270 A-U WC 20-XX cWW cW-W 14 X.C2105 X.G2269 C-G WC 19-XIX cWW cW-W 15 X.U2106 X.A2268 U-A WC 20-XX cWW cW-W 16 X.G2107 X.C2267 G-C WC 19-XIX cWW cW-W 17 X.U2108 X.G2266 U-G Wobble 28-XXVIII cWW cW-W 18 X.A2109 X.G2264 A-G Sheared 11-XI tHS tM-m 19 X.G2110 X.C2263 G-C WC 19-XIX cWW cW-W 20 X.C2111 X.G2262 C-G WC 19-XIX cWW cW-W 21 X.C2112 X.A2261 C-A -- -- cWW cW-W 22 X.U2113 X.A2260 U-A WC 20-XX cWW cW-W 23 X.G2114 X.C2259 G-C WC 19-XIX cWW cW-W 24 X.A2115 X.U2258 A-U WC 20-XX cWW cW-W 25 X.U2116 X.G2257 U-G Wobble 28-XXVIII cWW cW-W 26 X.A2117 X.U2256 A-U WC 20-XX cWW cW-W 27 X.U2118 X.G2255 U-G Wobble 28-XXVIII cWW cW-W 28 X.U2119 X.A2254 U+A -- -- c.H c.+M -------------------------------------------------------------------------- helix#67[1] bps=4 strand-1 5'-GACC-3' bp-type |||| strand-2 3'-CUGG-5' helix-form AAx 1 X.G2273 X.C2285 G-C WC 19-XIX cWW cW-W 2 X.A2274 X.U2284 A-U WC 20-XX cWW cW-W 3 X.C2275 X.G2283 C-G WC 19-XIX cWW cW-W 4 X.C2302 X.G2282 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#68[1] bps=10 strand-1 5'-UAAGGAGGCG-3' bp-type ...||||||| strand-2 3'-AAUCCUCCGC-5' helix-form ..x...A.x 1 X.U2299 X.A2294 U+A rWC 21-XXI tWW tW+W 2 X.A2300 X.A2293 A+A -- 02-II tHH tM+M 3 X.A2301 X.U2292 A-U -- -- tHW tM-W 4 X.G2303 X.C2291 G-C WC 19-XIX cWW cW-W 5 X.G2304 X.C2290 G-C WC 19-XIX cWW cW-W 6 X.A2305 X.U2289 A-U WC 20-XX cWW cW-W 7 X.G2306 X.C2288 G-C WC 19-XIX cWW cW-W 8 X.G2307 X.C2287 G-C WC 19-XIX cWW cW-W 9 X.C2308 X.G2286 C-G WC 19-XIX cWW cW-W 10 X.G2309 X.C2454 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#69[1] bps=9 strand-1 5'-AGGUUCCCU-3' bp-type .|||||||. strand-2 3'-UUCGAGGGA-5' helix-form x...AAAx 1 X.A2314 X.U2371 A-U -- -- tHW tM-W 2 X.G2316 X.U2370 G-U Wobble 28-XXVIII cWW cW-W 3 X.G2317 X.C2369 G-C WC 19-XIX cWW cW-W 4 X.U2318 X.G2368 U-G Wobble 28-XXVIII cWW cW-W 5 X.U2319 X.A2367 U-A WC 20-XX cWW cW-W 6 X.C2320 X.G2366 C-G WC 19-XIX cWW cW-W 7 X.C2321 X.G2365 C-G WC 19-XIX cWW cW-W 8 X.C2322 X.G2364 C-G WC 19-XIX cWW cW-W 9 X.U2323 X.A2362 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#70[1] bps=8 strand-1 5'-CAGAAUGG-3' bp-type |.|||||. strand-2 3'-GACUUACU-5' helix-form x.AAAA. 1 X.C2324 X.G2348 C-G WC 19-XIX cWW cW-W 2 X.A2325 X.A2345 A-A ~Sheared -- tHS tM-m 3 X.G2326 X.C2344 G-C WC 19-XIX cWW cW-W 4 X.A2327 X.U2343 A-U WC 20-XX cWW cW-W 5 X.A2328 X.U2342 A-U WC 20-XX cWW cW-W 6 X.U2329 X.A2341 U-A WC 20-XX cWW cW-W 7 X.G2330 X.C2340 G-C WC 19-XIX cWW cW-W 8 X.G2331 X.U2339 G-U ~Wobble -- cWW cW-W -------------------------------------------------------------------------- helix#71[2] bps=5 strand-1 5'-GUCUU-3' bp-type ||||| strand-2 3'-CGGAA-5' helix-form Ax.. 1 X.G2350 X.C2359 G-C WC 19-XIX cWW cW-W 2 X.U2351 X.G2358 U-G Wobble 28-XXVIII cWW cW-W 3 X.C2412 X.G2357 C-G WC 19-XIX cWW cW-W 4 X.U2413 X.A2356 U-A WC 20-XX cWW cW-W 5 X.U2414 X.A2355 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#72[3] bps=15 strand-1 5'-AGUCGAGCAGGGUCG-3' bp-type .|||..||||.|||. strand-2 3'-CCAGAGCGUCGCAGA-5' helix-form ..A....AAxxAA. 1 X.A2388 X.C2383 A-C -- -- cWW cW-W 2 X.G2389 X.C2382 G-C WC 19-XIX cWW cW-W 3 X.U2390 X.A2381 U-A WC 20-XX cWW cW-W 4 X.C2391 X.G2380 C-G WC 19-XIX cWW cW-W 5 X.G2392 X.A2379 G-A Sheared 11-XI tSH tm-M 6 X.A2393 X.G2378 A-G Sheared 11-XI tHS tM-m 7 X.G2394 X.C2377 G-C WC 19-XIX cWW cW-W 8 X.C2395 X.G2376 C-G WC 19-XIX cWW cW-W 9 X.A2396 X.U2375 A-U WC 20-XX cWW cW-W 10 X.G2397 X.C2374 G-C WC 19-XIX cWW cW-W 11 X.G2398 X.G2372 G-G -- -- cHH cM-M 12 X.G2399 X.C2408 G-C WC 19-XIX cWW cW-W 13 X.U2400 X.A2407 U-A WC 20-XX cWW cW-W 14 X.C2401 X.G2406 C-G WC 19-XIX cWW cW-W 15 X.G2402 X.A2405 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#73[1] bps=4 strand-1 5'-GAGU-3' bp-type |||| strand-2 3'-CUCG-5' helix-form Axx 1 X.G2410 X.C2312 G-C WC 19-XIX cWW cW-W 2 X.A2411 X.U2311 A-U WC 20-XX cWW cW-W 3 X.G2352 X.C2310 G-C WC 19-XIX cWW cW-W 4 X.U2353 X.G2416 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#74[0] bps=2 strand-1 5'-CA-3' bp-type .| strand-2 5'-UU-3' helix-form x 1 X.C2479 X.U2531 C-U -- 18-XVIII cWW cW-W 2 X.A2480 X.U2527 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#75[3] bps=19 strand-1 5'-GGCUAUCUCCCCCAAGAGC-3' bp-type |||||.||||||...||.. strand-2 3'-CCGGUUGAGGGGCAGCUAG-5' helix-form xA.x.xAAAAA....A.x 1 X.G2481 X.C2525 G-C WC 19-XIX cWW cW-W 2 X.G2482 X.C2523 G-C WC 19-XIX cWW cW-W 3 X.C2483 X.G2522 C-G WC 19-XIX cWW cW-W 4 X.U2484 X.G2521 U-G Wobble 28-XXVIII cWW cW-W 5 X.A2486 X.U2520 A-U WC 20-XX cWW cW-W 6 X.U2487 X.U2519 U-U -- 16-XVI cWW cW-W 7 X.C2488 X.G2516 C-G WC 19-XIX cWW cW-W 8 X.U2489 X.A2515 U-A WC 20-XX cWW cW-W 9 X.C2490 X.G2514 C-G WC 19-XIX cWW cW-W 10 X.C2491 X.G2513 C-G WC 19-XIX cWW cW-W 11 X.C2492 X.G2512 C-G WC 19-XIX cWW cW-W 12 X.C2493 X.G2511 C-G WC 19-XIX cWW cW-W 13 X.C2494 X.C2510 C-C -- -- cWW cW-W 14 X.A2495 X.A2509 A-A ~Sheared -- tSH tm-M 15 X.A2496 X.G2508 A-G Sheared 11-XI tHS tM-m 16 X.G2497 X.C2507 G-C WC 19-XIX cWW cW-W 17 X.A2498 X.U2506 A-U WC 20-XX cWW cW-W 18 X.G2499 X.A2505 G-A Sheared 11-XI tSH tm-M 19 X.C2502 X.G2556 C+G rWC 22-XXII tWW tW+W -------------------------------------------------------------------------- helix#76[4] bps=22 strand-1 5'-GCGGCUCAUCGCCCUAGGGGCU-3' bp-type .||||.|||||||||.|||||| strand-2 3'-CGUCGCGUGGCGGGGACCCUGG-5' helix-form xxA.x.xA.AAxA.xxA.... 1 X.G2532 X.C2637 G+C rWC 22-XXII tWW tW+W 2 X.C2534 X.G2609 C-G WC 19-XIX cWW cW-W 3 X.G2535 X.U2607 G-U Wobble 28-XXVIII cWW cW-W 4 X.G2536 X.C2606 G-C WC 19-XIX cWW cW-W 5 X.C2537 X.G2605 C-G WC 19-XIX cWW cW-W 6 X.U2538 X.C2602 U-C -- -- cWW cW-W 7 X.C2539 X.G2601 C-G WC 19-XIX cWW cW-W 8 X.A2540 X.U2598 A-U WC 20-XX cWW cW-W 9 X.U2541 X.G2597 U-G Wobble 28-XXVIII cWW cW-W 10 X.C2542 X.G2596 C-G WC 19-XIX cWW cW-W 11 X.G2543 X.C2595 G-C WC 19-XIX cWW cW-W 12 X.C2544 X.G2594 C-G WC 19-XIX cWW cW-W 13 X.C2547 X.G2572 C-G WC 19-XIX cWW cW-W 14 X.C2548 X.G2571 C-G WC 19-XIX cWW cW-W 15 X.U2549 X.G2570 U-G Wobble 28-XXVIII cWW cW-W 16 X.A2792 X.A2568 A-A -- -- cWS cW-m 17 X.G2550 X.C2567 G-C WC 19-XIX cWW cW-W 18 X.G2551 X.C2566 G-C WC 19-XIX cWW cW-W 19 X.G2552 X.C2565 G-C WC 19-XIX cWW cW-W 20 X.G2553 X.U2564 G-U Wobble 28-XXVIII cWW cW-W 21 X.C2554 X.G2563 C-G WC 19-XIX cWW cW-W 22 X.U2555 X.G2562 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#77[1] bps=7 strand-1 5'-CGCCCAU-3' bp-type .|||||. strand-2 3'-UCGGGUA-5' helix-form xAAA.x 1 X.C2583 X.U1982 C-U -- -- cW. cW-. 2 X.G2584 X.C2578 G-C WC 19-XIX cWW cW-W 3 X.C2585 X.G2577 C-G WC 19-XIX cWW cW-W 4 X.C2586 X.G2576 C-G WC 19-XIX cWW cW-W 5 X.C2587 X.G2575 C-G WC 19-XIX cWW cW-W 6 X.A2588 X.U2574 A-U WC 20-XX cWW cW-W 7 X.U2589 X.A2593 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#78[2] bps=11 strand-1 5'-CAAGAACGUCG-3' bp-type ...|||||||. strand-2 3'-CGGCUUGCAGA-5' helix-form xxx..AxAA. 1 X.C2613 X.C1809 C+C -- 14-XIV tWW tW+W 2 X.A2614 X.G2635 A-G Sheared 11-XI tHS tM-m 3 X.A1810 X.G2634 A-G -- -- cSS cm-m 4 X.G2615 X.C2633 G-C WC 19-XIX cWW cW-W 5 X.A2616 X.U2632 A-U WC 20-XX cWW cW-W 6 X.A2617 X.U2631 A-U WC 20-XX cWW cW-W 7 X.C2618 X.G2630 C-G WC 19-XIX cWW cW-W 8 X.G2619 X.C2628 G-C WC 19-XIX cWW cW-W 9 X.U2620 X.A2627 U-A WC 20-XX cWW cW-W 10 X.C2621 X.G2626 C-G WC 19-XIX cWW cW-W 11 X.G2622 X.A2625 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#79[2] bps=13 strand-1 5'-UCCGUCGUGGGCG-3' bp-type ||||||||||||. strand-2 3'-AGGCAGCGCCCGA-5' helix-form AAx..A..AAxx 1 X.U2642 X.A2081 U-A WC 20-XX cWW cW-W 2 X.C2643 X.G2080 C-G WC 19-XIX cWW cW-W 3 X.C2644 X.G2079 C-G WC 19-XIX cWW cW-W 4 X.G2645 X.C2077 G-C WC 19-XIX cWW cW-W 5 X.U2646 X.A2076 U-A WC 20-XX cWW cW-W 6 X.C2647 X.G2075 C-G WC 19-XIX cWW cW-W 7 X.G2648 X.C2074 G-C WC 19-XIX cWW cW-W 8 X.U2649 X.G2073 U-G Wobble 28-XXVIII cWW cW-W 9 X.G2650 X.C2072 G-C WC 19-XIX cWW cW-W 10 X.G2651 X.C2071 G-C WC 19-XIX cWW cW-W 11 X.G2652 X.C2070 G-C WC 19-XIX cWW cW-W 12 X.C2653 X.G2804 C-G WC 19-XIX cWW cW-W 13 X.G2654 X.A2808 G+A Linker -- tSS tm+m -------------------------------------------------------------------------- helix#80[5] bps=39 strand-1 5'-AGGACGGGAUGGACAUACUGGUGAGCCAGUUGUCGUUGG-3' bp-type .|...|||||||.|||||||||...|||||||||||.|. strand-2 3'-ACAUUUCCUGUCGGUGUGAUCGAUGGGUCGACGGCACCG-5' helix-form x..x.A.A...x.AA.Ax....x.xAAA.xA..AAx.. 1 X.A2689 X.A2558 A+A -- -- t.W t.+W 2 X.G2690 X.C2685 G-C WC 19-XIX cWW cW-W 3 X.G2691 X.A2684 G-A Sheared 11-XI tSH tm-M 4 X.A2692 X.U2683 A-U rHoogsteen 24-XXIV tHW tM-W 5 X.C2694 X.U2680 C-U -- -- cWW cW-W 6 X.G2695 X.U2679 G-U Wobble 28-XXVIII cWW cW-W 7 X.G2696 X.C2678 G-C WC 19-XIX cWW cW-W 8 X.G2697 X.C2677 G-C WC 19-XIX cWW cW-W 9 X.A2698 X.U2676 A-U WC 20-XX cWW cW-W 10 X.U2699 X.G2675 U-G Wobble 28-XXVIII cWW cW-W 11 X.G2700 X.U2674 G-U Wobble 28-XXVIII cWW cW-W 12 X.G2701 X.C2673 G-C WC 19-XIX cWW cW-W 13 X.A2702 X.G2759 A-G Imino 08-VIII cWW cW-W 14 X.C2703 X.G2758 C-G WC 19-XIX cWW cW-W 15 X.A2704 X.U2757 A-U WC 20-XX cWW cW-W 16 X.U2705 X.G2756 U-G Wobble 28-XXVIII cWW cW-W 17 X.A2706 X.U2755 A-U WC 20-XX cWW cW-W 18 X.C2707 X.G2754 C-G WC 19-XIX cWW cW-W 19 X.U2711 X.A2752 U-A WC 20-XX cWW cW-W 20 X.G2712 X.U2751 G-U Wobble 28-XXVIII cWW cW-W 21 X.G2713 X.C2750 G-C WC 19-XIX cWW cW-W 22 X.U2714 X.G2749 U-G Wobble 28-XXVIII cWW cW-W 23 X.G2715 X.A2748 G-A Sheared 11-XI tSH tm-M 24 X.A2893 X.U2747 A+U Hoogsteen 23-XXIII cHW cM+W 25 X.G2892 X.G2746 G+G -- -- tW. tW+. 26 X.C2718 X.G2745 C-G WC 19-XIX cWW cW-W 27 X.C2719 X.G2744 C-G WC 19-XIX cWW cW-W 28 X.A2720 X.U2743 A-U WC 20-XX cWW cW-W 29 X.G2721 X.C2742 G-C WC 19-XIX cWW cW-W 30 X.U2722 X.G2741 U-G Wobble 28-XXVIII cWW cW-W 31 X.U2723 X.A2738 U-A WC 20-XX cWW cW-W 32 X.G2724 X.C2737 G-C WC 19-XIX cWW cW-W 33 X.U2725 X.G2736 U-G Wobble 28-XXVIII cWW cW-W 34 X.C2726 X.G2735 C-G WC 19-XIX cWW cW-W 35 X.G2727 X.C2734 G-C WC 19-XIX cWW cW-W 36 X.U2728 X.A2733 U-A WC 20-XX cWW cW-W 37 X.U1499 X.C2731 U-C -- -- cWW cW-W 38 X.G1500 X.C2730 G-C WC 19-XIX cWW cW-W 39 X.G1501 X.G2729 G-G -- -- cWW cW-W -------------------------------------------------------------------------- helix#81[4] bps=31 strand-1 5'-CAUAAGCAUGAGCCCCCCUCAAAGAUUUCCC-3' bp-type .....||||...|||.||||...|||||||| strand-2 3'-AAAGUCGUGAUAGGGCGGAGAGUUUAAAGGG-5' helix-form ..xxxA...xx.AA.x.AA.xxx.AAA.Ax 1 X.C2779 X.A2777 C+A -- -- cHS cM+m 2 X.A2780 X.A2776 A-A -- 05-V tWH tW-M 3 X.U2781 X.A2775 U-A rHoogsteen 24-XXIV tWH tW-M 4 X.A2784 X.G2774 A-G Sheared 11-XI tHS tM-m 5 X.A2785 X.U2783 A+U Hoogsteen 23-XXIII cHW cM+W 6 X.G2786 X.C2772 G-C WC 19-XIX cWW cW-W 7 X.C2787 X.G2771 C-G WC 19-XIX cWW cW-W 8 X.A2788 X.U2770 A-U WC 20-XX cWW cW-W 9 X.U2789 X.G2769 U-G Wobble 28-XXVIII cWW cW-W 10 X.G2790 X.A2768 G-A Sheared 11-XI tSH tm-M 11 X.A2791 X.U2766 A-U rHoogsteen 24-XXIV tHW tM-W 12 X.G2793 X.A2765 G-A Imino 08-VIII cWW cW-W 13 X.C2794 X.G2764 C-G WC 19-XIX cWW cW-W 14 X.C2795 X.G2763 C-G WC 19-XIX cWW cW-W 15 X.C2796 X.G2762 C-G WC 19-XIX cWW cW-W 16 X.C2797 X.C2761 C+C -- -- tHH tM+M 17 X.C2798 X.G2670 C-G WC 19-XIX cWW cW-W 18 X.C2799 X.G2669 C-G WC 19-XIX cWW cW-W 19 X.U2800 X.A2668 U-A WC 20-XX cWW cW-W 20 X.C2801 X.G2667 C-G WC 19-XIX cWW cW-W 21 X.A2802 X.A2666 A-A ~Sheared -- tSH tm-M 22 X.A2805 X.G2665 A-G Sheared 11-XI tHS tM-m 23 X.A2803 X.U2664 A-U rHoogsteen 24-XXIV tHW tM-W 24 X.G2809 X.U2663 G-U Wobble 28-XXVIII cWW cW-W 25 X.A2810 X.U2662 A-U WC 20-XX cWW cW-W 26 X.U2811 X.A2661 U-A WC 20-XX cWW cW-W 27 X.U2812 X.A2660 U-A WC 20-XX cWW cW-W 28 X.U2813 X.A2659 U-A WC 20-XX cWW cW-W 29 X.C2814 X.G2658 C-G WC 19-XIX cWW cW-W 30 X.C2815 X.G2657 C-G WC 19-XIX cWW cW-W 31 X.C2816 X.G2913 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#82[3] bps=16 strand-1 5'-GUUAUAGAUCCCUCAA-3' bp-type |||...|||||||||. strand-2 3'-CAAAAGCUAGGGAGUA-5' helix-form ..x.x..AAx....x 1 X.G2824 X.C2819 G-C WC 19-XIX cWW cW-W 2 X.U2825 X.A2818 U-A WC 20-XX cWW cW-W 3 X.U2826 X.A2817 U-A WC 20-XX cWW cW-W 4 X.A2827 X.A2912 A-A -- 05-V tWH tW-M 5 X.U2828 X.A2911 U-A rHoogsteen 24-XXIV tWH tW-M 6 X.A2830 X.G2910 A-G Sheared 11-XI tHS tM-m 7 X.G2831 X.C2909 G-C WC 19-XIX cWW cW-W 8 X.A2832 X.U2908 A-U WC 20-XX cWW cW-W 9 X.U2833 X.A2907 U-A WC 20-XX cWW cW-W 10 X.C2834 X.G2906 C-G WC 19-XIX cWW cW-W 11 X.C2835 X.G2851 C-G WC 19-XIX cWW cW-W 12 X.C2836 X.G2850 C-G WC 19-XIX cWW cW-W 13 X.U2837 X.A2849 U-A WC 20-XX cWW cW-W 14 X.C2838 X.G2848 C-G WC 19-XIX cWW cW-W 15 X.A2839 X.U2847 A-U WC 20-XX cWW cW-W 16 X.A2841 X.A2846 A-A -- -- cSW cm-W -------------------------------------------------------------------------- helix#83[3] bps=13 strand-1 5'-AUAGGUUCGGGUG-3' bp-type .|||||||||||. strand-2 3'-AAUCUAAGCUCGA-5' helix-form xAAx.AA.x... 1 X.A2854 X.A2903 A-A ~Sheared -- tSH tm-M 2 X.U2856 X.A2902 U-A WC 20-XX cWW cW-W 3 X.A2857 X.U2901 A-U WC 20-XX cWW cW-W 4 X.G2858 X.C2900 G-C WC 19-XIX cWW cW-W 5 X.G2859 X.U2898 G-U Wobble 28-XXVIII cWW cW-W 6 X.U2860 X.A2897 U-A WC 20-XX cWW cW-W 7 X.U2861 X.A2896 U-A WC 20-XX cWW cW-W 8 X.C2862 X.G2895 C-G WC 19-XIX cWW cW-W 9 X.G2863 X.C2894 G-C WC 19-XIX cWW cW-W 10 X.G2865 X.U2891 G-U Wobble 28-XXVIII cWW cW-W 11 X.G2866 X.C2890 G-C WC 19-XIX cWW cW-W 12 X.U2867 X.G2889 U-G Wobble 28-XXVIII cWW cW-W 13 X.G2868 X.A2888 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#84[1] bps=7 strand-1 5'-AGCAUGG-3' bp-type .|||||. strand-2 3'-GUGUACA-5' helix-form ..AAA. 1 X.A2871 X.G2886 A+G -- -- cHH cM+M 2 X.G2872 X.U2885 G-U Wobble 28-XXVIII cWW cW-W 3 X.C2873 X.G2884 C-G WC 19-XIX cWW cW-W 4 X.A2874 X.U2883 A-U WC 20-XX cWW cW-W 5 X.U2875 X.A2882 U-A WC 20-XX cWW cW-W 6 X.G2876 X.C2881 G-C WC 19-XIX cWW cW-W 7 X.G2877 X.A2880 G-A -- -- tWH tW-M -------------------------------------------------------------------------- helix#85[0] bps=8 strand-1 5'-CUGGUGAC-3' bp-type |..|..|. strand-2 3'-GGACCGUU-5' helix-form A...... 1 Y.C2 Y.G113 C-G WC 19-XIX cWW cW-W 2 Y.U3 Y.G112 U-G -- -- cWW cW-W 3 Y.G4 Y.A111 G+A -- 09-IX cWH cW+M 4 Y.G5 Y.C110 G-C WC 19-XIX cWW cW-W 5 Y.U6 Y.C109 U-C -- -- cWW cW-W 6 Y.G7 Y.G108 G+G -- 06-VI cWH cW+M 7 Y.A8 Y.U107 A-U WC 20-XX cWW cW-W 8 Y.C9 Y.U106 C-U -- -- cWW cW-W -------------------------------------------------------------------------- helix#86[2] bps=10 strand-1 5'-CACCUGUCAU-3' bp-type .|||||||.. strand-2 3'-UUGGACAGAA-5' helix-form .Ax...xx. 1 Y.C26 Y.U54 C-U -- -- cWW cW-W 2 Y.A27 Y.U53 A-U WC 20-XX cWW cW-W 3 Y.C28 Y.G52 C-G WC 19-XIX cWW cW-W 4 Y.C29 Y.G49 C-G WC 19-XIX cWW cW-W 5 Y.U30 Y.A48 U-A WC 20-XX cWW cW-W 6 Y.G31 Y.C47 G-C WC 19-XIX cWW cW-W 7 Y.U32 Y.A46 U-A WC 20-XX cWW cW-W 8 Y.C36 Y.G42 C-G WC 19-XIX cWW cW-W 9 Y.A37 Y.A44 A-A -- -- cSW cm-W 10 Y.U38 Y.A43 U-A ~Sheared -- tSH tm-M -------------------------------------------------------------------------- helix#87[3] bps=13 strand-1 5'-GGUCUUUGCACGA-3' bp-type ..||.||||.... strand-2 3'-GGAGGAACGAAGA-5' helix-form ..AAAAx.x... 1 Y.G57 Y.G22 G-G -- -- t.W t.-W 2 Y.G58 Y.G21 G-G -- -- cWW cW-W 3 Y.U59 Y.A20 U-A WC 20-XX cWW cW-W 4 Y.C60 Y.G19 C-G WC 19-XIX cWW cW-W 5 Y.U61 Y.G18 U-G -- -- cWW cW-W 6 Y.U62 Y.A17 U-A WC 20-XX cWW cW-W 7 Y.U63 Y.A16 U-A WC 20-XX cWW cW-W 8 Y.G65 Y.C15 G-C WC 19-XIX cWW cW-W 9 Y.C66 Y.G14 C-G WC 19-XIX cWW cW-W 10 Y.A68 Y.A103 A-A -- -- cWW cW-W 11 Y.C69 Y.A102 C-A -- -- cWW cW-W 12 Y.G70 Y.G101 G-G ~Sheared -- tSH tm-M 13 Y.A71 Y.A100 A+A -- -- tHH tM+M -------------------------------------------------------------------------- helix#88[0] bps=12 strand-1 5'-GGUAGCCAACUU-3' bp-type ......|..... strand-2 3'-GAGAUCGCCUUC-5' helix-form .......A..x 1 Y.G73 Y.G98 G-G -- -- cWW cW-W 2 Y.G74 Y.A97 G-A -- -- tWH tW-M 3 Y.U75 Y.G96 U-G ~rHoogsteen -- tWH tW-M 4 Y.A76 Y.A95 A-A ~Sheared -- tHS tM-m 5 Y.G77 Y.U94 G-U -- -- cWW cW-W 6 Y.C78 Y.C93 C-C -- -- cWW cW-W 7 Y.C79 Y.G92 C-G WC 19-XIX cWW cW-W 8 Y.A80 Y.C91 A-C -- -- cWW cW-W 9 Y.A81 Y.C90 A-C -- -- cWW cW-W 10 Y.C82 Y.U89 C-U -- -- cWW cW-W 11 Y.U83 Y.U88 U-U -- -- cWW cW-W 12 Y.U84 Y.C86 U+C -- -- cSH cm+M **************************************************************************** List of 174 stems Note: a stem is defined as a helix consisting of only canonical WC/wobble pairs, with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=6 strand-1 5'-UUAAGU-3' bp-type |||||| strand-2 3'-AAUUCA-5' helix-form AA.AA 1 X.U3 X.A2919 U-A WC 20-XX cWW cW-W 2 X.U4 X.A2918 U-A WC 20-XX cWW cW-W 3 X.A5 X.U2917 A-U WC 20-XX cWW cW-W 4 X.A6 X.U2916 A-U WC 20-XX cWW cW-W 5 X.G7 X.C2915 G-C WC 19-XIX cWW cW-W 6 X.U8 X.A2914 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#2[#2] bps=10 strand-1 5'-GGGCGCACGG-3' bp-type |||||||||| strand-2 3'-UUCGUGUGCC-5' helix-form ..A..AA.A 1 X.G15 X.U570 G-U Wobble 28-XXVIII cWW cW-W 2 X.G16 X.U569 G-U Wobble 28-XXVIII cWW cW-W 3 X.G17 X.C568 G-C WC 19-XIX cWW cW-W 4 X.C18 X.G567 C-G WC 19-XIX cWW cW-W 5 X.G19 X.U566 G-U Wobble 28-XXVIII cWW cW-W 6 X.C20 X.G565 C-G WC 19-XIX cWW cW-W 7 X.A21 X.U564 A-U WC 20-XX cWW cW-W 8 X.C22 X.G563 C-G WC 19-XIX cWW cW-W 9 X.G23 X.C562 G-C WC 19-XIX cWW cW-W 10 X.G24 X.C561 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#3[#2] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 X.C31 X.G520 C-G WC 19-XIX cWW cW-W 2 X.C32 X.G519 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#4[#2] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 X.G35 X.C491 G-C WC 19-XIX cWW cW-W 2 X.G36 X.C490 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#5[#2] bps=6 strand-1 5'-CACUAG-3' bp-type |||||| strand-2 3'-GUGAUC-5' helix-form ...AA 1 X.C37 X.G488 C-G WC 19-XIX cWW cW-W 2 X.A38 X.U487 A-U WC 20-XX cWW cW-W 3 X.C39 X.G486 C-G WC 19-XIX cWW cW-W 4 X.U40 X.A485 U-A WC 20-XX cWW cW-W 5 X.A41 X.U484 A-U WC 20-XX cWW cW-W 6 X.G42 X.C483 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#6[#2] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 X.A44 X.U480 A-U WC 20-XX cWW cW-W 2 X.G45 X.C479 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#7[#3] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C46 X.G181 C-G WC 19-XIX cWW cW-W 2 X.C47 X.G180 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#8[#4] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form .A 1 X.G54 X.C115 G-C WC 19-XIX cWW cW-W 2 X.G55 X.C114 G-C WC 19-XIX cWW cW-W 3 X.A56 X.U113 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#9[#4] bps=3 strand-1 5'-CGU-3' bp-type ||| strand-2 3'-GCA-5' helix-form A. 1 X.C57 X.G70 C-G WC 19-XIX cWW cW-W 2 X.G58 X.C69 G-C WC 19-XIX cWW cW-W 3 X.U59 X.A68 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#10[#6] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 X.A61 X.U93 A-U WC 20-XX cWW cW-W 2 X.C62 X.G92 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#11[#4] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 X.A65 X.U89 A-U WC 20-XX cWW cW-W 2 X.C66 X.G88 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#12[#5] bps=6 strand-1 5'-CUUUGG-3' bp-type |||||| strand-2 3'-GAGACC-5' helix-form ...AA 1 X.C76 X.G109 C-G WC 19-XIX cWW cW-W 2 X.U77 X.A108 U-A WC 20-XX cWW cW-W 3 X.U78 X.G107 U-G Wobble 28-XXVIII cWW cW-W 4 X.U79 X.A106 U-A WC 20-XX cWW cW-W 5 X.G80 X.C105 G-C WC 19-XIX cWW cW-W 6 X.G81 X.C104 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#13[#6] bps=3 strand-1 5'-GCU-3' bp-type ||| strand-2 3'-CGA-5' helix-form A. 1 X.G85 X.C97 G-C WC 19-XIX cWW cW-W 2 X.C86 X.G96 C-G WC 19-XIX cWW cW-W 3 X.U87 X.A95 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#14[#7] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form AA 1 X.G120 X.C129 G-C WC 19-XIX cWW cW-W 2 X.G121 X.C128 G-C WC 19-XIX cWW cW-W 3 X.G122 X.C127 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#15[#7] bps=7 strand-1 5'-AGCAUGA-3' bp-type ||||||| strand-2 3'-UUGUACU-5' helix-form ...... 1 X.A130 X.U149 A-U WC 20-XX cWW cW-W 2 X.G131 X.U148 G-U Wobble 28-XXVIII cWW cW-W 3 X.C132 X.G147 C-G WC 19-XIX cWW cW-W 4 X.A133 X.U146 A-U WC 20-XX cWW cW-W 5 X.U134 X.A145 U-A WC 20-XX cWW cW-W 6 X.G135 X.C144 G-C WC 19-XIX cWW cW-W 7 X.A136 X.U143 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#16[#4] bps=2 strand-1 5'-UC-3' bp-type || strand-2 3'-AG-5' helix-form A 1 X.U151 X.A178 U-A WC 20-XX cWW cW-W 2 X.C152 X.G177 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#17[#4] bps=5 strand-1 5'-GAUAU-3' bp-type ||||| strand-2 3'-CUAUA-5' helix-form .... 1 X.G153 X.C175 G-C WC 19-XIX cWW cW-W 2 X.A154 X.U174 A-U WC 20-XX cWW cW-W 3 X.U155 X.A173 U-A WC 20-XX cWW cW-W 4 X.A156 X.U172 A-U WC 20-XX cWW cW-W 5 X.U157 X.A171 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#18[#2] bps=4 strand-1 5'-CCGG-3' bp-type |||| strand-2 3'-GGCC-5' helix-form AAA 1 X.C187 X.G215 C-G WC 19-XIX cWW cW-W 2 X.C188 X.G214 C-G WC 19-XIX cWW cW-W 3 X.G189 X.C213 G-C WC 19-XIX cWW cW-W 4 X.G190 X.C212 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#19[#9] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-CU-5' helix-form A 1 X.G227 X.C234 G-C WC 19-XIX cWW cW-W 2 X.A228 X.U233 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#20[#8] bps=4 strand-1 5'-UCCC-3' bp-type |||| strand-2 3'-AGGG-5' helix-form A.A 1 X.U238 X.A265 U-A WC 20-XX cWW cW-W 2 X.C239 X.G264 C-G WC 19-XIX cWW cW-W 3 X.C240 X.G263 C-G WC 19-XIX cWW cW-W 4 X.C241 X.G262 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#21[#8] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 X.G248 X.C256 G-C WC 19-XIX cWW cW-W 2 X.C249 X.G255 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#22[#8] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form .A 1 X.G269 X.C472 G-C WC 19-XIX cWW cW-W 2 X.C270 X.G471 C-G WC 19-XIX cWW cW-W 3 X.C271 X.G470 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#23[#8] bps=5 strand-1 5'-CCAAC-3' bp-type ||||| strand-2 3'-GGUUG-5' helix-form ...A 1 X.C276 X.G295 C-G WC 19-XIX cWW cW-W 2 X.C277 X.G294 C-G WC 19-XIX cWW cW-W 3 X.A278 X.U293 A-U WC 20-XX cWW cW-W 4 X.A279 X.U292 A-U WC 20-XX cWW cW-W 5 X.C280 X.G291 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#24[#8] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 X.A282 X.U289 A-U WC 20-XX cWW cW-W 2 X.G283 X.C288 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#25[#14] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form .. 1 X.G303 X.C414 G-C WC 19-XIX cWW cW-W 2 X.G304 X.C413 G-C WC 19-XIX cWW cW-W 3 X.A305 X.U412 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#26[#10] bps=5 strand-1 5'-CACUC-3' bp-type ||||| strand-2 3'-GUGAG-5' helix-form A... 1 X.C306 X.G409 C-G WC 19-XIX cWW cW-W 2 X.A307 X.U408 A-U WC 20-XX cWW cW-W 3 X.C308 X.G407 C-G WC 19-XIX cWW cW-W 4 X.U309 X.A406 U-A WC 20-XX cWW cW-W 5 X.C310 X.G405 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#27[#13] bps=6 strand-1 5'-GACAUU-3' bp-type |||||| strand-2 3'-UUGUAA-5' helix-form ....A 1 X.G331 X.U395 G-U Wobble 28-XXVIII cWW cW-W 2 X.A332 X.U394 A-U WC 20-XX cWW cW-W 3 X.C333 X.G393 C-G WC 19-XIX cWW cW-W 4 X.A334 X.U392 A-U WC 20-XX cWW cW-W 5 X.U335 X.A391 U-A WC 20-XX cWW cW-W 6 X.U336 X.A390 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#28[#13] bps=3 strand-1 5'-GAC-3' bp-type ||| strand-2 3'-CUG-5' helix-form .A 1 X.G338 X.C386 G-C WC 19-XIX cWW cW-W 2 X.A339 X.U385 A-U WC 20-XX cWW cW-W 3 X.C340 X.G384 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#29[#12] bps=5 strand-1 5'-UCAUC-3' bp-type ||||| strand-2 3'-AGUAG-5' helix-form .AA. 1 X.U344 X.A359 U-A WC 20-XX cWW cW-W 2 X.C345 X.G358 C-G WC 19-XIX cWW cW-W 3 X.A346 X.U357 A-U WC 20-XX cWW cW-W 4 X.U347 X.A356 U-A WC 20-XX cWW cW-W 5 X.C348 X.G355 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#30[#12] bps=2 strand-1 5'-AU-3' bp-type || strand-2 3'-UA-5' helix-form . 1 X.A360 X.U377 A-U WC 20-XX cWW cW-W 2 X.U361 X.A376 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#31[#13] bps=3 strand-1 5'-AGG-3' bp-type ||| strand-2 3'-UCC-5' helix-form AA 1 X.A368 X.U380 A-U WC 20-XX cWW cW-W 2 X.G369 X.C379 G-C WC 19-XIX cWW cW-W 3 X.G370 X.C378 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#32[#15] bps=7 strand-1 5'-CGACGGA-3' bp-type ||||||| strand-2 3'-GCUGCCU-5' helix-form AA.A.A 1 X.C421 X.G445 C-G WC 19-XIX cWW cW-W 2 X.G422 X.C444 G-C WC 19-XIX cWW cW-W 3 X.A423 X.U443 A-U WC 20-XX cWW cW-W 4 X.C424 X.G442 C-G WC 19-XIX cWW cW-W 5 X.G425 X.C441 G-C WC 19-XIX cWW cW-W 6 X.G426 X.C440 G-C WC 19-XIX cWW cW-W 7 X.A427 X.U439 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#33[#14] bps=5 strand-1 5'-GGGAG-3' bp-type ||||| strand-2 3'-UCCUC-5' helix-form .AAA 1 X.G452 X.U467 G-U Wobble 28-XXVIII cWW cW-W 2 X.G453 X.C466 G-C WC 19-XIX cWW cW-W 3 X.G454 X.C465 G-C WC 19-XIX cWW cW-W 4 X.A455 X.U464 A-U WC 20-XX cWW cW-W 5 X.G456 X.C463 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#34[#14] bps=4 strand-1 5'-CCAU-3' bp-type |||| strand-2 3'-GGUA-5' helix-form AAA 1 X.C459 X.G2437 C-G WC 19-XIX cWW cW-W 2 X.C460 X.G2436 C-G WC 19-XIX cWW cW-W 3 X.A461 X.U2435 A-U WC 20-XX cWW cW-W 4 X.U462 X.A2434 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#35[#16] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C507 X.G514 C-G WC 19-XIX cWW cW-W 2 X.C508 X.G513 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#36[#17] bps=4 strand-1 5'-CCCC-3' bp-type |||| strand-2 3'-GGGG-5' helix-form AAA 1 X.C530 X.G541 C-G WC 19-XIX cWW cW-W 2 X.C531 X.G540 C-G WC 19-XIX cWW cW-W 3 X.C532 X.G539 C-G WC 19-XIX cWW cW-W 4 X.C533 X.G538 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#37[#19] bps=4 strand-1 5'-GUCA-3' bp-type |||| strand-2 3'-CGGU-5' helix-form ..A 1 X.G578 X.C603 G-C WC 19-XIX cWW cW-W 2 X.U579 X.G602 U-G Wobble 28-XXVIII cWW cW-W 3 X.C580 X.G601 C-G WC 19-XIX cWW cW-W 4 X.A581 X.U600 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#38[#19] bps=4 strand-1 5'-GCCC-3' bp-type |||| strand-2 3'-UGGG-5' helix-form .A. 1 X.G584 X.U597 G-U Wobble 28-XXVIII cWW cW-W 2 X.C585 X.G596 C-G WC 19-XIX cWW cW-W 3 X.C586 X.G595 C-G WC 19-XIX cWW cW-W 4 X.C587 X.G594 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#39[#38] bps=6 strand-1 5'-ACCGGC-3' bp-type |||||| strand-2 3'-UGGCCG-5' helix-form AAAA. 1 X.A622 X.U1299 A-U WC 20-XX cWW cW-W 2 X.C623 X.G1298 C-G WC 19-XIX cWW cW-W 3 X.C624 X.G1297 C-G WC 19-XIX cWW cW-W 4 X.G625 X.C1296 G-C WC 19-XIX cWW cW-W 5 X.G626 X.C1295 G-C WC 19-XIX cWW cW-W 6 X.C627 X.G1294 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#40[#21] bps=7 strand-1 5'-UACGAUU-3' bp-type ||||||| strand-2 3'-AUGCUGG-5' helix-form ..AA.. 1 X.U632 X.A713 U-A WC 20-XX cWW cW-W 2 X.A633 X.U712 A-U WC 20-XX cWW cW-W 3 X.C634 X.G711 C-G WC 19-XIX cWW cW-W 4 X.G635 X.C710 G-C WC 19-XIX cWW cW-W 5 X.A636 X.U709 A-U WC 20-XX cWW cW-W 6 X.U637 X.G708 U-G Wobble 28-XXVIII cWW cW-W 7 X.U638 X.G707 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#41[#21] bps=5 strand-1 5'-GAUGC-3' bp-type ||||| strand-2 3'-UUAUG-5' helix-form .A.. 1 X.G640 X.U705 G-U Wobble 28-XXVIII cWW cW-W 2 X.A641 X.U704 A-U WC 20-XX cWW cW-W 3 X.U642 X.A703 U-A WC 20-XX cWW cW-W 4 X.G643 X.U702 G-U Wobble 28-XXVIII cWW cW-W 5 X.C644 X.G701 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#42[#22] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCG-5' helix-form A. 1 X.G647 X.C669 G-C WC 19-XIX cWW cW-W 2 X.G648 X.C668 G-C WC 19-XIX cWW cW-W 3 X.U649 X.G667 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#43[#22] bps=3 strand-1 5'-GCA-3' bp-type ||| strand-2 3'-UGU-5' helix-form .. 1 X.G653 X.U663 G-U Wobble 28-XXVIII cWW cW-W 2 X.C654 X.G662 C-G WC 19-XIX cWW cW-W 3 X.A655 X.U661 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#44[#23] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 X.G673 X.C680 G-C WC 19-XIX cWW cW-W 2 X.C674 X.G679 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#45[#24] bps=3 strand-1 5'-UCU-3' bp-type ||| strand-2 3'-GGG-5' helix-form .. 1 X.U684 X.G694 U-G Wobble 28-XXVIII cWW cW-W 2 X.C685 X.G693 C-G WC 19-XIX cWW cW-W 3 X.U686 X.G692 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#46[#20] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C716 X.G854 C-G WC 19-XIX cWW cW-W 2 X.C717 X.G853 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#47[#20] bps=6 strand-1 5'-CCAGGU-3' bp-type |||||| strand-2 3'-GGUCCA-5' helix-form AA... 1 X.C723 X.G844 C-G WC 19-XIX cWW cW-W 2 X.C724 X.G843 C-G WC 19-XIX cWW cW-W 3 X.A725 X.U842 A-U WC 20-XX cWW cW-W 4 X.G726 X.C841 G-C WC 19-XIX cWW cW-W 5 X.G727 X.C840 G-C WC 19-XIX cWW cW-W 6 X.U728 X.A839 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#48[#25] bps=9 strand-1 5'-ACCCUUGGU-3' bp-type ||||||||| strand-2 3'-UGGGAGUCA-5' helix-form AA.A...A 1 X.A734 X.U818 A-U WC 20-XX cWW cW-W 2 X.C735 X.G817 C-G WC 19-XIX cWW cW-W 3 X.C736 X.G816 C-G WC 19-XIX cWW cW-W 4 X.C737 X.G815 C-G WC 19-XIX cWW cW-W 5 X.U738 X.A814 U-A WC 20-XX cWW cW-W 6 X.U739 X.G813 U-G Wobble 28-XXVIII cWW cW-W 7 X.G740 X.U812 G-U Wobble 28-XXVIII cWW cW-W 8 X.G741 X.C811 G-C WC 19-XIX cWW cW-W 9 X.U742 X.A810 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#49[#26] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form A. 1 X.G745 X.C777 G-C WC 19-XIX cWW cW-W 2 X.G746 X.C776 G-C WC 19-XIX cWW cW-W 3 X.U747 X.A775 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#50[#26] bps=5 strand-1 5'-GUUCA-3' bp-type ||||| strand-2 3'-UAAGU-5' helix-form .A.. 1 X.G752 X.U769 G-U Wobble 28-XXVIII cWW cW-W 2 X.U753 X.A768 U-A WC 20-XX cWW cW-W 3 X.U754 X.A767 U-A WC 20-XX cWW cW-W 4 X.C755 X.G766 C-G WC 19-XIX cWW cW-W 5 X.A756 X.U765 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#51[#26] bps=3 strand-1 5'-CCG-3' bp-type ||| strand-2 3'-GGC-5' helix-form A. 1 X.C781 X.G805 C-G WC 19-XIX cWW cW-W 2 X.C782 X.G804 C-G WC 19-XIX cWW cW-W 3 X.G783 X.C803 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#52[#26] bps=5 strand-1 5'-CUUAC-3' bp-type ||||| strand-2 3'-GAGUG-5' helix-form A.AA 1 X.C785 X.G802 C-G WC 19-XIX cWW cW-W 2 X.U786 X.A801 U-A WC 20-XX cWW cW-W 3 X.U787 X.G800 U-G Wobble 28-XXVIII cWW cW-W 4 X.A788 X.U799 A-U WC 20-XX cWW cW-W 5 X.C789 X.G798 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#53[#20] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form A. 1 X.G822 X.C832 G-C WC 19-XIX cWW cW-W 2 X.G823 X.C831 G-C WC 19-XIX cWW cW-W 3 X.A824 X.U830 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#54[#30] bps=6 strand-1 5'-CUCUCC-3' bp-type |||||| strand-2 3'-GAGAGG-5' helix-form .AAAA 1 X.C857 X.G1234 C-G WC 19-XIX cWW cW-W 2 X.U858 X.A1233 U-A WC 20-XX cWW cW-W 3 X.C859 X.G1232 C-G WC 19-XIX cWW cW-W 4 X.U860 X.A1231 U-A WC 20-XX cWW cW-W 5 X.C861 X.G1230 C-G WC 19-XIX cWW cW-W 6 X.C862 X.G1229 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#55[#27] bps=5 strand-1 5'-UAGCU-3' bp-type ||||| strand-2 3'-AUCGG-5' helix-form AAA. 1 X.U867 X.A880 U-A WC 20-XX cWW cW-W 2 X.A868 X.U879 A-U WC 20-XX cWW cW-W 3 X.G869 X.C878 G-C WC 19-XIX cWW cW-W 4 X.C870 X.G877 C-G WC 19-XIX cWW cW-W 5 X.U871 X.G876 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#56[#27] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 X.G881 X.U987 G-U Wobble 28-XXVIII cWW cW-W 2 X.C882 X.G986 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#57[#27] bps=7 strand-1 5'-CUCAAGU-3' bp-type ||||||| strand-2 3'-GGGUUCA-5' helix-form A.AAAA 1 X.C883 X.G984 C-G WC 19-XIX cWW cW-W 2 X.U884 X.G983 U-G Wobble 28-XXVIII cWW cW-W 3 X.C885 X.G982 C-G WC 19-XIX cWW cW-W 4 X.A886 X.U981 A-U WC 20-XX cWW cW-W 5 X.A887 X.U980 A-U WC 20-XX cWW cW-W 6 X.G888 X.C979 G-C WC 19-XIX cWW cW-W 7 X.U889 X.A978 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#58[#28] bps=5 strand-1 5'-GAUUA-3' bp-type ||||| strand-2 3'-UUAAU-5' helix-form .AAA 1 X.G893 X.U975 G-U Wobble 28-XXVIII cWW cW-W 2 X.A894 X.U974 A-U WC 20-XX cWW cW-W 3 X.U895 X.A973 U-A WC 20-XX cWW cW-W 4 X.U896 X.A972 U-A WC 20-XX cWW cW-W 5 X.A897 X.U971 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#59[#28] bps=4 strand-1 5'-UUGG-3' bp-type |||| strand-2 3'-AACC-5' helix-form .AA 1 X.U898 X.A969 U-A WC 20-XX cWW cW-W 2 X.U899 X.A968 U-A WC 20-XX cWW cW-W 3 X.G900 X.C967 G-C WC 19-XIX cWW cW-W 4 X.G901 X.C966 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#60[#28] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form A 1 X.A908 X.U958 A-U WC 20-XX cWW cW-W 2 X.G909 X.C957 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#61[#29] bps=8 strand-1 5'-UGUUUGGA-3' bp-type |||||||| strand-2 3'-ACAGACUU-5' helix-form A...A.. 1 X.U913 X.A954 U-A WC 20-XX cWW cW-W 2 X.G914 X.C953 G-C WC 19-XIX cWW cW-W 3 X.U915 X.A952 U-A WC 20-XX cWW cW-W 4 X.U916 X.G951 U-G Wobble 28-XXVIII cWW cW-W 5 X.U917 X.A950 U-A WC 20-XX cWW cW-W 6 X.G918 X.C949 G-C WC 19-XIX cWW cW-W 7 X.G919 X.U948 G-U Wobble 28-XXVIII cWW cW-W 8 X.A920 X.U947 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#62[#30] bps=10 strand-1 5'-GAACAUGGGU-3' bp-type |||||||||| strand-2 3'-CUUGUGCCUG-5' helix-form AAAA..... 1 X.G990 X.C1015 G-C WC 19-XIX cWW cW-W 2 X.A991 X.U1014 A-U WC 20-XX cWW cW-W 3 X.A992 X.U1013 A-U WC 20-XX cWW cW-W 4 X.C993 X.G1012 C-G WC 19-XIX cWW cW-W 5 X.A994 X.U1011 A-U WC 20-XX cWW cW-W 6 X.U995 X.G1010 U-G Wobble 28-XXVIII cWW cW-W 7 X.G996 X.C1009 G-C WC 19-XIX cWW cW-W 8 X.G997 X.C1008 G-C WC 19-XIX cWW cW-W 9 X.G998 X.U1007 G-U Wobble 28-XXVIII cWW cW-W 10 X.U999 X.G1006 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#63[#31] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form A. 1 X.G1020 X.C1031 G-C WC 19-XIX cWW cW-W 2 X.G1021 X.C1030 G-C WC 19-XIX cWW cW-W 3 X.G1022 X.C1029 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#64[#36] bps=4 strand-1 5'-CCAC-3' bp-type |||| strand-2 3'-GGUG-5' helix-form AAA 1 X.C1035 X.G1207 C-G WC 19-XIX cWW cW-W 2 X.C1036 X.G1206 C-G WC 19-XIX cWW cW-W 3 X.A1037 X.U1205 A-U WC 20-XX cWW cW-W 4 X.C1038 X.G1204 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#65[#36] bps=3 strand-1 5'-AGC-3' bp-type ||| strand-2 3'-UCG-5' helix-form .A 1 X.A1040 X.U1203 A-U WC 20-XX cWW cW-W 2 X.G1041 X.C1202 G-C WC 19-XIX cWW cW-W 3 X.C1042 X.G1201 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#66[#36] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form .A 1 X.G1046 X.C1197 G-C WC 19-XIX cWW cW-W 2 X.G1047 X.C1196 G-C WC 19-XIX cWW cW-W 3 X.U1048 X.A1195 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#67[#32] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C1049 X.G1182 C-G WC 19-XIX cWW cW-W 2 X.C1050 X.G1181 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#68[#36] bps=6 strand-1 5'-AUAUGU-3' bp-type |||||| strand-2 3'-UAUACA-5' helix-form .AAAA 1 X.A1057 X.U1193 A-U WC 20-XX cWW cW-W 2 X.U1058 X.A1192 U-A WC 20-XX cWW cW-W 3 X.A1059 X.U1191 A-U WC 20-XX cWW cW-W 4 X.U1060 X.A1190 U-A WC 20-XX cWW cW-W 5 X.G1061 X.C1189 G-C WC 19-XIX cWW cW-W 6 X.U1062 X.A1188 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#69[#34] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 X.G1074 X.C1168 G-C WC 19-XIX cWW cW-W 2 X.G1075 X.C1167 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#70[#34] bps=4 strand-1 5'-GUGG-3' bp-type |||| strand-2 3'-CGUC-5' helix-form ... 1 X.G1078 X.C1165 G-C WC 19-XIX cWW cW-W 2 X.U1079 X.G1164 U-G Wobble 28-XXVIII cWW cW-W 3 X.G1080 X.U1163 G-U Wobble 28-XXVIII cWW cW-W 4 X.G1081 X.C1162 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#71[#34] bps=5 strand-1 5'-GUUGC-3' bp-type ||||| strand-2 3'-CAGUG-5' helix-form A... 1 X.G1083 X.C1160 G-C WC 19-XIX cWW cW-W 2 X.U1084 X.A1159 U-A WC 20-XX cWW cW-W 3 X.U1085 X.G1158 U-G Wobble 28-XXVIII cWW cW-W 4 X.G1086 X.U1157 G-U Wobble 28-XXVIII cWW cW-W 5 X.C1087 X.G1156 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#72[#35] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 X.A1095 X.U1152 A-U WC 20-XX cWW cW-W 2 X.C1096 X.G1151 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#73[#36] bps=7 strand-1 5'-AUUGUCC-3' bp-type ||||||| strand-2 3'-UAACAGG-5' helix-form AAAAA. 1 X.A1208 X.U1224 A-U WC 20-XX cWW cW-W 2 X.U1209 X.A1223 U-A WC 20-XX cWW cW-W 3 X.U1210 X.A1222 U-A WC 20-XX cWW cW-W 4 X.G1211 X.C1221 G-C WC 19-XIX cWW cW-W 5 X.U1212 X.A1220 U-A WC 20-XX cWW cW-W 6 X.C1213 X.G1219 C-G WC 19-XIX cWW cW-W 7 X.C1214 X.G1218 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#74[#30] bps=7 strand-1 5'-UUCUAAG-3' bp-type ||||||| strand-2 3'-AAGAUUC-5' helix-form .A.A.A 1 X.U1237 X.A1285 U-A WC 20-XX cWW cW-W 2 X.U1238 X.A1284 U-A WC 20-XX cWW cW-W 3 X.C1239 X.G1283 C-G WC 19-XIX cWW cW-W 4 X.U1240 X.A1282 U-A WC 20-XX cWW cW-W 5 X.A1241 X.U1281 A-U WC 20-XX cWW cW-W 6 X.A1242 X.U1280 A-U WC 20-XX cWW cW-W 7 X.G1243 X.C1279 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#75[#30] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 X.G1245 X.C1277 G-C WC 19-XIX cWW cW-W 2 X.C1246 X.G1276 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#76[#37] bps=5 strand-1 5'-GCAUG-3' bp-type ||||| strand-2 3'-UGUAC-5' helix-form .AAA 1 X.G1253 X.U1272 G-U Wobble 28-XXVIII cWW cW-W 2 X.C1254 X.G1271 C-G WC 19-XIX cWW cW-W 3 X.A1255 X.U1270 A-U WC 20-XX cWW cW-W 4 X.U1256 X.A1269 U-A WC 20-XX cWW cW-W 5 X.G1257 X.C1268 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#77[#37] bps=2 strand-1 5'-UC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 X.U1259 X.G1266 U-G Wobble 28-XXVIII cWW cW-W 2 X.C1260 X.G1265 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#78[#39] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 X.G1307 X.U2038 G-U Wobble 28-XXVIII cWW cW-W 2 X.C1308 X.G2037 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#79[#43] bps=6 strand-1 5'-GACGGG-3' bp-type |||||| strand-2 3'-CUGCCC-5' helix-form AAAAA 1 X.G1313 X.C1331 G-C WC 19-XIX cWW cW-W 2 X.A1314 X.U1330 A-U WC 20-XX cWW cW-W 3 X.C1315 X.G1329 C-G WC 19-XIX cWW cW-W 4 X.G1316 X.C1328 G-C WC 19-XIX cWW cW-W 5 X.G1317 X.C1327 G-C WC 19-XIX cWW cW-W 6 X.G1318 X.C1326 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#80[#43] bps=4 strand-1 5'-CACC-3' bp-type |||| strand-2 3'-GUGG-5' helix-form AAA 1 X.C1332 X.G1689 C-G WC 19-XIX cWW cW-W 2 X.A1333 X.U1688 A-U WC 20-XX cWW cW-W 3 X.C1334 X.G1687 C-G WC 19-XIX cWW cW-W 4 X.C1335 X.G1686 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#81[#41] bps=3 strand-1 5'-GAC-3' bp-type ||| strand-2 3'-CUG-5' helix-form .. 1 X.G1340 X.C1669 G-C WC 19-XIX cWW cW-W 2 X.A1341 X.U1668 A-U WC 20-XX cWW cW-W 3 X.C1342 X.G1667 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#82[#41] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 X.G1346 X.C1649 G-C WC 19-XIX cWW cW-W 2 X.G1347 X.C1648 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#83[#42] bps=6 strand-1 5'-CCAGAG-3' bp-type |||||| strand-2 3'-GGUCUC-5' helix-form .AAA. 1 X.C1351 X.G1375 C-G WC 19-XIX cWW cW-W 2 X.C1352 X.G1374 C-G WC 19-XIX cWW cW-W 3 X.A1353 X.U1373 A-U WC 20-XX cWW cW-W 4 X.G1354 X.C1372 G-C WC 19-XIX cWW cW-W 5 X.A1355 X.U1371 A-U WC 20-XX cWW cW-W 6 X.G1356 X.C1370 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#84[#42] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 X.G1360 X.C1368 G-C WC 19-XIX cWW cW-W 2 X.G1361 X.C1367 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#85[#48] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form . 1 X.G1380 X.C1441 G-C WC 19-XIX cWW cW-W 2 X.U1381 X.A1440 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#86[#44] bps=4 strand-1 5'-CGGG-3' bp-type |||| strand-2 3'-GCCC-5' helix-form ... 1 X.C1382 X.G1645 C-G WC 19-XIX cWW cW-W 2 X.G1383 X.C1644 G-C WC 19-XIX cWW cW-W 3 X.G1384 X.C1643 G-C WC 19-XIX cWW cW-W 4 X.G1385 X.C1642 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#87[#45] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 X.C1387 X.G1418 C-G WC 19-XIX cWW cW-W 2 X.C1388 X.G1417 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#88[#46] bps=3 strand-1 5'-GCU-3' bp-type ||| strand-2 3'-CGG-5' helix-form A. 1 X.G1392 X.C1413 G-C WC 19-XIX cWW cW-W 2 X.C1393 X.G1412 C-G WC 19-XIX cWW cW-W 3 X.U1394 X.G1411 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#89[#47] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form AA 1 X.G1398 X.C1407 G-C WC 19-XIX cWW cW-W 2 X.C1399 X.G1406 C-G WC 19-XIX cWW cW-W 3 X.C1400 X.G1405 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#90[#48] bps=5 strand-1 5'-ACAGG-3' bp-type ||||| strand-2 3'-UGUCC-5' helix-form .AAA 1 X.A1422 X.U1439 A-U WC 20-XX cWW cW-W 2 X.C1423 X.G1438 C-G WC 19-XIX cWW cW-W 3 X.A1424 X.U1437 A-U WC 20-XX cWW cW-W 4 X.G1425 X.C1436 G-C WC 19-XIX cWW cW-W 5 X.G1426 X.C1435 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#91[#48] bps=6 strand-1 5'-CACCUA-3' bp-type |||||| strand-2 3'-GUGGAU-5' helix-form AA... 1 X.C1442 X.G1641 C-G WC 19-XIX cWW cW-W 2 X.A1443 X.U1640 A-U WC 20-XX cWW cW-W 3 X.C1444 X.G1639 C-G WC 19-XIX cWW cW-W 4 X.C1445 X.G1638 C-G WC 19-XIX cWW cW-W 5 X.U1446 X.A1637 U-A WC 20-XX cWW cW-W 6 X.A1447 X.U1636 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#92[#49] bps=2 strand-1 5'-UC-3' bp-type || strand-2 3'-AG-5' helix-form . 1 X.U1460 X.A1628 U-A WC 20-XX cWW cW-W 2 X.C1461 X.G1627 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#93[#50] bps=4 strand-1 5'-GGGG-3' bp-type |||| strand-2 3'-CUCC-5' helix-form ..A 1 X.G1465 X.C1624 G-C WC 19-XIX cWW cW-W 2 X.G1466 X.U1623 G-U Wobble 28-XXVIII cWW cW-W 3 X.G1467 X.C1622 G-C WC 19-XIX cWW cW-W 4 X.G1468 X.C1621 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#94[#54] bps=4 strand-1 5'-GCAG-3' bp-type |||| strand-2 3'-CGUC-5' helix-form .A. 1 X.G1473 X.C1611 G-C WC 19-XIX cWW cW-W 2 X.C1474 X.G1610 C-G WC 19-XIX cWW cW-W 3 X.A1475 X.U1609 A-U WC 20-XX cWW cW-W 4 X.G1476 X.C1608 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#95[#54] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-CU-5' helix-form . 1 X.G1480 X.C1604 G-C WC 19-XIX cWW cW-W 2 X.A1481 X.U1603 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#96[#51] bps=3 strand-1 5'-CAG-3' bp-type ||| strand-2 3'-GUC-5' helix-form .. 1 X.C1516 X.G1564 C-G WC 19-XIX cWW cW-W 2 X.A1517 X.U1563 A-U WC 20-XX cWW cW-W 3 X.G1518 X.C1562 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#97[#51] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 X.G1523 X.C1557 G-C WC 19-XIX cWW cW-W 2 X.C1524 X.G1556 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#98[#55] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C1655 X.G1664 C-G WC 19-XIX cWW cW-W 2 X.C1656 X.G1663 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#99[#41] bps=3 strand-1 5'-AGA-3' bp-type ||| strand-2 3'-UCU-5' helix-form .A 1 X.A1671 X.U1683 A-U WC 20-XX cWW cW-W 2 X.G1672 X.C1682 G-C WC 19-XIX cWW cW-W 3 X.A1673 X.U1681 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#100[#39] bps=4 strand-1 5'-CGAG-3' bp-type |||| strand-2 3'-GCUC-5' helix-form AA. 1 X.C1692 X.G2036 C-G WC 19-XIX cWW cW-W 2 X.G1693 X.C2035 G-C WC 19-XIX cWW cW-W 3 X.A1694 X.U2034 A-U WC 20-XX cWW cW-W 4 X.G1695 X.C2033 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#101[#39] bps=8 strand-1 5'-CUCUCGUU-3' bp-type |||||||| strand-2 3'-GAGAGCAA-5' helix-form AAAAAAA 1 X.C1700 X.G2031 C-G WC 19-XIX cWW cW-W 2 X.U1701 X.A2030 U-A WC 20-XX cWW cW-W 3 X.C1702 X.G2029 C-G WC 19-XIX cWW cW-W 4 X.U1703 X.A2028 U-A WC 20-XX cWW cW-W 5 X.C1704 X.G2027 C-G WC 19-XIX cWW cW-W 6 X.G1705 X.C2026 G-C WC 19-XIX cWW cW-W 7 X.U1706 X.A2025 U-A WC 20-XX cWW cW-W 8 X.U1707 X.A2024 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#102[#39] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form A 1 X.A1709 X.U2022 A-U WC 20-XX cWW cW-W 2 X.G1710 X.C2021 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#103[#56] bps=5 strand-1 5'-ACCCC-3' bp-type ||||| strand-2 3'-UGGGG-5' helix-form ..A. 1 X.A1726 X.U1750 A-U WC 20-XX cWW cW-W 2 X.C1727 X.G1749 C-G WC 19-XIX cWW cW-W 3 X.C1728 X.G1748 C-G WC 19-XIX cWW cW-W 4 X.C1729 X.G1747 C-G WC 19-XIX cWW cW-W 5 X.C1730 X.G1746 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#104[#58] bps=5 strand-1 5'-GCUCU-3' bp-type ||||| strand-2 3'-CGAGA-5' helix-form ..AA 1 X.G1751 X.C1778 G-C WC 19-XIX cWW cW-W 2 X.C1752 X.G1777 C-G WC 19-XIX cWW cW-W 3 X.U1753 X.A1776 U-A WC 20-XX cWW cW-W 4 X.C1754 X.G1775 C-G WC 19-XIX cWW cW-W 5 X.U1755 X.A1774 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#105[#57] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CG-5' helix-form . 1 X.G1761 X.C1768 G-C WC 19-XIX cWW cW-W 2 X.U1762 X.G1767 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#106[#39] bps=7 strand-1 5'-GCCCAAG-3' bp-type ||||||| strand-2 3'-CGGGUUU-5' helix-form A..... 1 X.G1791 X.C2015 G-C WC 19-XIX cWW cW-W 2 X.C1792 X.G2014 C-G WC 19-XIX cWW cW-W 3 X.C1793 X.G2013 C-G WC 19-XIX cWW cW-W 4 X.C1794 X.G2012 C-G WC 19-XIX cWW cW-W 5 X.A1795 X.U2011 A-U WC 20-XX cWW cW-W 6 X.A1796 X.U2010 A-U WC 20-XX cWW cW-W 7 X.G1797 X.U2009 G-U Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#107[#39] bps=2 strand-1 5'-CG-3' bp-type || strand-2 3'-GC-5' helix-form A 1 X.C1798 X.G2007 C-G WC 19-XIX cWW cW-W 2 X.G1799 X.C2006 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#108[#59] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form . 1 X.G1803 X.C1815 G-C WC 19-XIX cWW cW-W 2 X.U1804 X.A1814 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#109[#60] bps=7 strand-1 5'-GGUCUCU-3' bp-type ||||||| strand-2 3'-UCGGGGA-5' helix-form ...... 1 X.G1819 X.U1854 G-U Wobble 28-XXVIII cWW cW-W 2 X.G1820 X.C1853 G-C WC 19-XIX cWW cW-W 3 X.U1821 X.G1852 U-G Wobble 28-XXVIII cWW cW-W 4 X.C1822 X.G1851 C-G WC 19-XIX cWW cW-W 5 X.U1823 X.G1850 U-G Wobble 28-XXVIII cWW cW-W 6 X.C1824 X.G1849 C-G WC 19-XIX cWW cW-W 7 X.U1825 X.A1848 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#110[#61] bps=3 strand-1 5'-ACC-3' bp-type ||| strand-2 3'-UGG-5' helix-form A. 1 X.A1831 X.U1840 A-U WC 20-XX cWW cW-W 2 X.C1832 X.G1839 C-G WC 19-XIX cWW cW-W 3 X.C1833 X.G1838 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#111[#59] bps=4 strand-1 5'-CGCC-3' bp-type |||| strand-2 3'-GCGG-5' helix-form AA. 1 X.C1857 X.G2002 C-G WC 19-XIX cWW cW-W 2 X.G1858 X.C2001 G-C WC 19-XIX cWW cW-W 3 X.C1859 X.G2000 C-G WC 19-XIX cWW cW-W 4 X.C1860 X.G1999 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#112[#62] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 X.C1863 X.G1931 C-G WC 19-XIX cWW cW-W 2 X.C1864 X.G1930 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#113[#62] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form . 1 X.G1867 X.C1929 G-C WC 19-XIX cWW cW-W 2 X.U1868 X.A1928 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#114[#62] bps=5 strand-1 5'-GCUGG-3' bp-type ||||| strand-2 3'-UGACC-5' helix-form .AA. 1 X.G1869 X.U1925 G-U Wobble 28-XXVIII cWW cW-W 2 X.C1870 X.G1924 C-G WC 19-XIX cWW cW-W 3 X.U1871 X.A1923 U-A WC 20-XX cWW cW-W 4 X.G1872 X.C1922 G-C WC 19-XIX cWW cW-W 5 X.G1873 X.C1921 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#115[#62] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCG-5' helix-form AA 1 X.G1876 X.C1920 G-C WC 19-XIX cWW cW-W 2 X.G1877 X.C1919 G-C WC 19-XIX cWW cW-W 3 X.U1878 X.G1918 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#116[#62] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-CU-5' helix-form . 1 X.G1882 X.C1914 G-C WC 19-XIX cWW cW-W 2 X.A1883 X.U1913 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#117[#62] bps=4 strand-1 5'-UGGU-3' bp-type |||| strand-2 3'-AUCG-5' helix-form ... 1 X.U1888 X.A1908 U-A WC 20-XX cWW cW-W 2 X.G1889 X.U1907 G-U Wobble 28-XXVIII cWW cW-W 3 X.G1890 X.C1906 G-C WC 19-XIX cWW cW-W 4 X.U1891 X.G1905 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#118[#63] bps=5 strand-1 5'-GUCGG-3' bp-type ||||| strand-2 3'-CAGCC-5' helix-form .AA. 1 X.G1972 X.C1988 G-C WC 19-XIX cWW cW-W 2 X.U1973 X.A1987 U-A WC 20-XX cWW cW-W 3 X.C1974 X.G1986 C-G WC 19-XIX cWW cW-W 4 X.G1975 X.C1985 G-C WC 19-XIX cWW cW-W 5 X.G1976 X.C1984 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#119[#18] bps=5 strand-1 5'-ACCUG-3' bp-type ||||| strand-2 3'-UGGAC-5' helix-form AAA. 1 X.A2050 X.U2067 A-U WC 20-XX cWW cW-W 2 X.C2051 X.G2066 C-G WC 19-XIX cWW cW-W 3 X.C2052 X.G2065 C-G WC 19-XIX cWW cW-W 4 X.U2053 X.A2064 U-A WC 20-XX cWW cW-W 5 X.G2054 X.C2063 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#120[#79] bps=8 strand-1 5'-CCCGCGAC-3' bp-type |||||||| strand-2 3'-GGGUGCUG-5' helix-form AA..A.. 1 X.C2070 X.G2652 C-G WC 19-XIX cWW cW-W 2 X.C2071 X.G2651 C-G WC 19-XIX cWW cW-W 3 X.C2072 X.G2650 C-G WC 19-XIX cWW cW-W 4 X.G2073 X.U2649 G-U Wobble 28-XXVIII cWW cW-W 5 X.C2074 X.G2648 C-G WC 19-XIX cWW cW-W 6 X.G2075 X.C2647 G-C WC 19-XIX cWW cW-W 7 X.A2076 X.U2646 A-U WC 20-XX cWW cW-W 8 X.C2077 X.G2645 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#121[#79] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form AA 1 X.G2079 X.C2644 G-C WC 19-XIX cWW cW-W 2 X.G2080 X.C2643 G-C WC 19-XIX cWW cW-W 3 X.A2081 X.U2642 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#122[#65] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 X.G2083 X.C2639 G-C WC 19-XIX cWW cW-W 2 X.G2084 X.C2638 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#123[#66] bps=4 strand-1 5'-CCCG-3' bp-type |||| strand-2 3'-GGGC-5' helix-form ... 1 X.C2091 X.G2473 C-G WC 19-XIX cWW cW-W 2 X.C2092 X.G2472 C-G WC 19-XIX cWW cW-W 3 X.C2093 X.G2471 C-G WC 19-XIX cWW cW-W 4 X.G2094 X.C2470 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#124[#66] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 X.G2096 X.C2469 G-C WC 19-XIX cWW cW-W 2 X.G2097 X.C2468 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#125[#66] bps=4 strand-1 5'-AGCU-3' bp-type |||| strand-2 3'-UCGA-5' helix-form AA. 1 X.A2098 X.U2465 A-U WC 20-XX cWW cW-W 2 X.G2099 X.C2464 G-C WC 19-XIX cWW cW-W 3 X.C2100 X.G2463 C-G WC 19-XIX cWW cW-W 4 X.U2101 X.A2462 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#126[#66] bps=5 strand-1 5'-ACUGU-3' bp-type ||||| strand-2 3'-UGACG-5' helix-form .A.. 1 X.A2104 X.U2270 A-U WC 20-XX cWW cW-W 2 X.C2105 X.G2269 C-G WC 19-XIX cWW cW-W 3 X.U2106 X.A2268 U-A WC 20-XX cWW cW-W 4 X.G2107 X.C2267 G-C WC 19-XIX cWW cW-W 5 X.U2108 X.G2266 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#127[#66] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 X.G2110 X.C2263 G-C WC 19-XIX cWW cW-W 2 X.C2111 X.G2262 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#128[#66] bps=6 strand-1 5'-UGAUAU-3' bp-type |||||| strand-2 3'-ACUGUG-5' helix-form .A... 1 X.U2113 X.A2260 U-A WC 20-XX cWW cW-W 2 X.G2114 X.C2259 G-C WC 19-XIX cWW cW-W 3 X.A2115 X.U2258 A-U WC 20-XX cWW cW-W 4 X.U2116 X.G2257 U-G Wobble 28-XXVIII cWW cW-W 5 X.A2117 X.U2256 A-U WC 20-XX cWW cW-W 6 X.U2118 X.G2255 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#129[#46] bps=4 strand-1 5'-GAAA-3' bp-type |||| strand-2 3'-CUUU-5' helix-form AA. 1 X.G2120 X.C2223 G-C WC 19-XIX cWW cW-W 2 X.A2121 X.U2222 A-U WC 20-XX cWW cW-W 3 X.A2122 X.U2221 A-U WC 20-XX cWW cW-W 4 X.A2123 X.U2220 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#130[#46] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C2228 X.G2249 C-G WC 19-XIX cWW cW-W 2 X.C2229 X.G2248 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#131[#46] bps=5 strand-1 5'-ACCAC-3' bp-type ||||| strand-2 3'-UGGUG-5' helix-form A... 1 X.A2232 X.U2246 A-U WC 20-XX cWW cW-W 2 X.C2233 X.G2245 C-G WC 19-XIX cWW cW-W 3 X.C2234 X.G2244 C-G WC 19-XIX cWW cW-W 4 X.A2235 X.U2243 A-U WC 20-XX cWW cW-W 5 X.C2236 X.G2242 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#132[#67] bps=3 strand-1 5'-GAC-3' bp-type ||| strand-2 3'-CUG-5' helix-form AA 1 X.G2273 X.C2285 G-C WC 19-XIX cWW cW-W 2 X.A2274 X.U2284 A-U WC 20-XX cWW cW-W 3 X.C2275 X.G2283 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#133[#68] bps=6 strand-1 5'-GCCUCC-3' bp-type |||||| strand-2 3'-CGGAGG-5' helix-form .A... 1 X.G2286 X.C2308 G-C WC 19-XIX cWW cW-W 2 X.C2287 X.G2307 C-G WC 19-XIX cWW cW-W 3 X.C2288 X.G2306 C-G WC 19-XIX cWW cW-W 4 X.U2289 X.A2305 U-A WC 20-XX cWW cW-W 5 X.C2290 X.G2304 C-G WC 19-XIX cWW cW-W 6 X.C2291 X.G2303 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#134[#73] bps=2 strand-1 5'-UC-3' bp-type || strand-2 3'-AG-5' helix-form A 1 X.U2311 X.A2411 U-A WC 20-XX cWW cW-W 2 X.C2312 X.G2410 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#135[#69] bps=7 strand-1 5'-GGUUCCC-3' bp-type ||||||| strand-2 3'-UCGAGGG-5' helix-form ...AAA 1 X.G2316 X.U2370 G-U Wobble 28-XXVIII cWW cW-W 2 X.G2317 X.C2369 G-C WC 19-XIX cWW cW-W 3 X.U2318 X.G2368 U-G Wobble 28-XXVIII cWW cW-W 4 X.U2319 X.A2367 U-A WC 20-XX cWW cW-W 5 X.C2320 X.G2366 C-G WC 19-XIX cWW cW-W 6 X.C2321 X.G2365 C-G WC 19-XIX cWW cW-W 7 X.C2322 X.G2364 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#136[#70] bps=5 strand-1 5'-GAAUG-3' bp-type ||||| strand-2 3'-CUUAC-5' helix-form AAAA 1 X.G2326 X.C2344 G-C WC 19-XIX cWW cW-W 2 X.A2327 X.U2343 A-U WC 20-XX cWW cW-W 3 X.A2328 X.U2342 A-U WC 20-XX cWW cW-W 4 X.U2329 X.A2341 U-A WC 20-XX cWW cW-W 5 X.G2330 X.C2340 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#137[#71] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CG-5' helix-form A 1 X.G2350 X.C2359 G-C WC 19-XIX cWW cW-W 2 X.U2351 X.G2358 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#138[#71] bps=3 strand-1 5'-AAG-3' bp-type ||| strand-2 3'-UUC-5' helix-form .. 1 X.A2355 X.U2414 A-U WC 20-XX cWW cW-W 2 X.A2356 X.U2413 A-U WC 20-XX cWW cW-W 3 X.G2357 X.C2412 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#139[#72] bps=4 strand-1 5'-CUGC-3' bp-type |||| strand-2 3'-GACG-5' helix-form AA. 1 X.C2374 X.G2397 C-G WC 19-XIX cWW cW-W 2 X.U2375 X.A2396 U-A WC 20-XX cWW cW-W 3 X.G2376 X.C2395 G-C WC 19-XIX cWW cW-W 4 X.C2377 X.G2394 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#140[#72] bps=3 strand-1 5'-GAC-3' bp-type ||| strand-2 3'-CUG-5' helix-form A. 1 X.G2380 X.C2391 G-C WC 19-XIX cWW cW-W 2 X.A2381 X.U2390 A-U WC 20-XX cWW cW-W 3 X.C2382 X.G2389 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#141[#72] bps=3 strand-1 5'-GUC-3' bp-type ||| strand-2 3'-CAG-5' helix-form AA 1 X.G2399 X.C2408 G-C WC 19-XIX cWW cW-W 2 X.U2400 X.A2407 U-A WC 20-XX cWW cW-W 3 X.C2401 X.G2406 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#142[#14] bps=7 strand-1 5'-CGGUGGU-3' bp-type ||||||| strand-2 3'-GCUACCG-5' helix-form A.AAA. 1 X.C2422 X.G2448 C-G WC 19-XIX cWW cW-W 2 X.G2423 X.C2447 G-C WC 19-XIX cWW cW-W 3 X.G2424 X.U2446 G-U Wobble 28-XXVIII cWW cW-W 4 X.U2425 X.A2445 U-A WC 20-XX cWW cW-W 5 X.G2426 X.C2444 G-C WC 19-XIX cWW cW-W 6 X.G2427 X.C2443 G-C WC 19-XIX cWW cW-W 7 X.U2428 X.G2442 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#143[#14] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 X.C2430 X.G2441 C-G WC 19-XIX cWW cW-W 2 X.C2431 X.G2440 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#144[#75] bps=3 strand-1 5'-GCU-3' bp-type ||| strand-2 3'-CGG-5' helix-form A. 1 X.G2482 X.C2523 G-C WC 19-XIX cWW cW-W 2 X.C2483 X.G2522 C-G WC 19-XIX cWW cW-W 3 X.U2484 X.G2521 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#145[#75] bps=6 strand-1 5'-CUCCCC-3' bp-type |||||| strand-2 3'-GAGGGG-5' helix-form AAAAA 1 X.C2488 X.G2516 C-G WC 19-XIX cWW cW-W 2 X.U2489 X.A2515 U-A WC 20-XX cWW cW-W 3 X.C2490 X.G2514 C-G WC 19-XIX cWW cW-W 4 X.C2491 X.G2513 C-G WC 19-XIX cWW cW-W 5 X.C2492 X.G2512 C-G WC 19-XIX cWW cW-W 6 X.C2493 X.G2511 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#146[#75] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-CU-5' helix-form A 1 X.G2497 X.C2507 G-C WC 19-XIX cWW cW-W 2 X.A2498 X.U2506 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#147[#76] bps=3 strand-1 5'-GGC-3' bp-type ||| strand-2 3'-UCG-5' helix-form A. 1 X.G2535 X.U2607 G-U Wobble 28-XXVIII cWW cW-W 2 X.G2536 X.C2606 G-C WC 19-XIX cWW cW-W 3 X.C2537 X.G2605 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#148[#76] bps=5 strand-1 5'-AUCGC-3' bp-type ||||| strand-2 3'-UGGCG-5' helix-form A.AA 1 X.A2540 X.U2598 A-U WC 20-XX cWW cW-W 2 X.U2541 X.G2597 U-G Wobble 28-XXVIII cWW cW-W 3 X.C2542 X.G2596 C-G WC 19-XIX cWW cW-W 4 X.G2543 X.C2595 G-C WC 19-XIX cWW cW-W 5 X.C2544 X.G2594 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#149[#76] bps=3 strand-1 5'-CCU-3' bp-type ||| strand-2 3'-GGG-5' helix-form A. 1 X.C2547 X.G2572 C-G WC 19-XIX cWW cW-W 2 X.C2548 X.G2571 C-G WC 19-XIX cWW cW-W 3 X.U2549 X.G2570 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#150[#76] bps=6 strand-1 5'-GGGGCU-3' bp-type |||||| strand-2 3'-CCCUGG-5' helix-form A.... 1 X.G2550 X.C2567 G-C WC 19-XIX cWW cW-W 2 X.G2551 X.C2566 G-C WC 19-XIX cWW cW-W 3 X.G2552 X.C2565 G-C WC 19-XIX cWW cW-W 4 X.G2553 X.U2564 G-U Wobble 28-XXVIII cWW cW-W 5 X.C2554 X.G2563 C-G WC 19-XIX cWW cW-W 6 X.U2555 X.G2562 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#151[#77] bps=5 strand-1 5'-UGGGC-3' bp-type ||||| strand-2 3'-ACCCG-5' helix-form .AAA 1 X.U2574 X.A2588 U-A WC 20-XX cWW cW-W 2 X.G2575 X.C2587 G-C WC 19-XIX cWW cW-W 3 X.G2576 X.C2586 G-C WC 19-XIX cWW cW-W 4 X.G2577 X.C2585 G-C WC 19-XIX cWW cW-W 5 X.C2578 X.G2584 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#152[#78] bps=4 strand-1 5'-GAAC-3' bp-type |||| strand-2 3'-CUUG-5' helix-form ..A 1 X.G2615 X.C2633 G-C WC 19-XIX cWW cW-W 2 X.A2616 X.U2632 A-U WC 20-XX cWW cW-W 3 X.A2617 X.U2631 A-U WC 20-XX cWW cW-W 4 X.C2618 X.G2630 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#153[#78] bps=3 strand-1 5'-GUC-3' bp-type ||| strand-2 3'-CAG-5' helix-form AA 1 X.G2619 X.C2628 G-C WC 19-XIX cWW cW-W 2 X.U2620 X.A2627 U-A WC 20-XX cWW cW-W 3 X.C2621 X.G2626 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#154[#81] bps=7 strand-1 5'-GGAAAUU-3' bp-type ||||||| strand-2 3'-CCUUUAG-5' helix-form A.AAA. 1 X.G2657 X.C2815 G-C WC 19-XIX cWW cW-W 2 X.G2658 X.C2814 G-C WC 19-XIX cWW cW-W 3 X.A2659 X.U2813 A-U WC 20-XX cWW cW-W 4 X.A2660 X.U2812 A-U WC 20-XX cWW cW-W 5 X.A2661 X.U2811 A-U WC 20-XX cWW cW-W 6 X.U2662 X.A2810 U-A WC 20-XX cWW cW-W 7 X.U2663 X.G2809 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#155[#81] bps=4 strand-1 5'-GAGG-3' bp-type |||| strand-2 3'-CUCC-5' helix-form AA. 1 X.G2667 X.C2801 G-C WC 19-XIX cWW cW-W 2 X.A2668 X.U2800 A-U WC 20-XX cWW cW-W 3 X.G2669 X.C2799 G-C WC 19-XIX cWW cW-W 4 X.G2670 X.C2798 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#156[#80] bps=7 strand-1 5'-CUGUCCU-3' bp-type ||||||| strand-2 3'-GGUAGGG-5' helix-form ...A.A 1 X.C2673 X.G2701 C-G WC 19-XIX cWW cW-W 2 X.U2674 X.G2700 U-G Wobble 28-XXVIII cWW cW-W 3 X.G2675 X.U2699 G-U Wobble 28-XXVIII cWW cW-W 4 X.U2676 X.A2698 U-A WC 20-XX cWW cW-W 5 X.C2677 X.G2697 C-G WC 19-XIX cWW cW-W 6 X.C2678 X.G2696 C-G WC 19-XIX cWW cW-W 7 X.U2679 X.G2695 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#157[#80] bps=5 strand-1 5'-CAUAC-3' bp-type ||||| strand-2 3'-GUGUG-5' helix-form AA.A 1 X.C2703 X.G2758 C-G WC 19-XIX cWW cW-W 2 X.A2704 X.U2757 A-U WC 20-XX cWW cW-W 3 X.U2705 X.G2756 U-G Wobble 28-XXVIII cWW cW-W 4 X.A2706 X.U2755 A-U WC 20-XX cWW cW-W 5 X.C2707 X.G2754 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#158[#80] bps=4 strand-1 5'-UGGU-3' bp-type |||| strand-2 3'-AUCG-5' helix-form ... 1 X.U2711 X.A2752 U-A WC 20-XX cWW cW-W 2 X.G2712 X.U2751 G-U Wobble 28-XXVIII cWW cW-W 3 X.G2713 X.C2750 G-C WC 19-XIX cWW cW-W 4 X.U2714 X.G2749 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#159[#80] bps=5 strand-1 5'-CCAGU-3' bp-type ||||| strand-2 3'-GGUCG-5' helix-form AAA. 1 X.C2718 X.G2745 C-G WC 19-XIX cWW cW-W 2 X.C2719 X.G2744 C-G WC 19-XIX cWW cW-W 3 X.A2720 X.U2743 A-U WC 20-XX cWW cW-W 4 X.G2721 X.C2742 G-C WC 19-XIX cWW cW-W 5 X.U2722 X.G2741 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#160[#80] bps=6 strand-1 5'-UGUCGU-3' bp-type |||||| strand-2 3'-ACGGCA-5' helix-form A..AA 1 X.U2723 X.A2738 U-A WC 20-XX cWW cW-W 2 X.G2724 X.C2737 G-C WC 19-XIX cWW cW-W 3 X.U2725 X.G2736 U-G Wobble 28-XXVIII cWW cW-W 4 X.C2726 X.G2735 C-G WC 19-XIX cWW cW-W 5 X.G2727 X.C2734 G-C WC 19-XIX cWW cW-W 6 X.U2728 X.A2733 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#161[#81] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form AA 1 X.G2762 X.C2796 G-C WC 19-XIX cWW cW-W 2 X.G2763 X.C2795 G-C WC 19-XIX cWW cW-W 3 X.G2764 X.C2794 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#162[#81] bps=4 strand-1 5'-GUGC-3' bp-type |||| strand-2 3'-UACG-5' helix-form ..A 1 X.G2769 X.U2789 G-U Wobble 28-XXVIII cWW cW-W 2 X.U2770 X.A2788 U-A WC 20-XX cWW cW-W 3 X.G2771 X.C2787 G-C WC 19-XIX cWW cW-W 4 X.C2772 X.G2786 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#163[#82] bps=3 strand-1 5'-AAC-3' bp-type ||| strand-2 3'-UUG-5' helix-form .. 1 X.A2817 X.U2826 A-U WC 20-XX cWW cW-W 2 X.A2818 X.U2825 A-U WC 20-XX cWW cW-W 3 X.C2819 X.G2824 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#164[#82] bps=4 strand-1 5'-GAUC-3' bp-type |||| strand-2 3'-CUAG-5' helix-form .AA 1 X.G2831 X.C2909 G-C WC 19-XIX cWW cW-W 2 X.A2832 X.U2908 A-U WC 20-XX cWW cW-W 3 X.U2833 X.A2907 U-A WC 20-XX cWW cW-W 4 X.C2834 X.G2906 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#165[#82] bps=5 strand-1 5'-CCUCA-3' bp-type ||||| strand-2 3'-GGAGU-5' helix-form .... 1 X.C2835 X.G2851 C-G WC 19-XIX cWW cW-W 2 X.C2836 X.G2850 C-G WC 19-XIX cWW cW-W 3 X.U2837 X.A2849 U-A WC 20-XX cWW cW-W 4 X.C2838 X.G2848 C-G WC 19-XIX cWW cW-W 5 X.A2839 X.U2847 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#166[#83] bps=3 strand-1 5'-UAG-3' bp-type ||| strand-2 3'-AUC-5' helix-form AA 1 X.U2856 X.A2902 U-A WC 20-XX cWW cW-W 2 X.A2857 X.U2901 A-U WC 20-XX cWW cW-W 3 X.G2858 X.C2900 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#167[#83] bps=5 strand-1 5'-GUUCG-3' bp-type ||||| strand-2 3'-UAAGC-5' helix-form .AA. 1 X.G2859 X.U2898 G-U Wobble 28-XXVIII cWW cW-W 2 X.U2860 X.A2897 U-A WC 20-XX cWW cW-W 3 X.U2861 X.A2896 U-A WC 20-XX cWW cW-W 4 X.C2862 X.G2895 C-G WC 19-XIX cWW cW-W 5 X.G2863 X.C2894 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#168[#83] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-UCG-5' helix-form .. 1 X.G2865 X.U2891 G-U Wobble 28-XXVIII cWW cW-W 2 X.G2866 X.C2890 G-C WC 19-XIX cWW cW-W 3 X.U2867 X.G2889 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#169[#84] bps=5 strand-1 5'-GCAUG-3' bp-type ||||| strand-2 3'-UGUAC-5' helix-form .AAA 1 X.G2872 X.U2885 G-U Wobble 28-XXVIII cWW cW-W 2 X.C2873 X.G2884 C-G WC 19-XIX cWW cW-W 3 X.A2874 X.U2883 A-U WC 20-XX cWW cW-W 4 X.U2875 X.A2882 U-A WC 20-XX cWW cW-W 5 X.G2876 X.C2881 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#170[#87] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 Y.G14 Y.C66 G-C WC 19-XIX cWW cW-W 2 Y.C15 Y.G65 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#171[#87] bps=2 strand-1 5'-AA-3' bp-type || strand-2 3'-UU-5' helix-form A 1 Y.A16 Y.U63 A-U WC 20-XX cWW cW-W 2 Y.A17 Y.U62 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#172[#87] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-CU-5' helix-form A 1 Y.G19 Y.C60 G-C WC 19-XIX cWW cW-W 2 Y.A20 Y.U59 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#173[#86] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form A 1 Y.A27 Y.U53 A-U WC 20-XX cWW cW-W 2 Y.C28 Y.G52 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#174[#86] bps=4 strand-1 5'-CUGU-3' bp-type |||| strand-2 3'-GACA-5' helix-form ... 1 Y.C29 Y.G49 C-G WC 19-XIX cWW cW-W 2 Y.U30 Y.A48 U-A WC 20-XX cWW cW-W 3 Y.G31 Y.C47 G-C WC 19-XIX cWW cW-W 4 Y.U32 Y.A46 U-A WC 20-XX cWW cW-W **************************************************************************** List of 66 isolated WC/wobble pairs Note: isolated WC/wobble pairs are assigned negative indices to differentiate them from the stem numbers, which are positive. -------------------------------------------------------------------- [#2] -1 X.G30 X.C555 G-C WC 19-XIX cWW cW-W [#4] -2 X.G67 X.U74 G-U Wobble 28-XXVIII cWW cW-W [#2] -3 X.C186 X.G217 C-G WC 19-XIX cWW cW-W [#2] -4 X.G197 X.C204 G-C WC 19-XIX cWW cW-W [#8] -5 X.C201 X.G251 C-G WC 19-XIX cWW cW-W [#14] -6 X.G300 X.C450 G-C WC 19-XIX cWW cW-W [#12] -7 X.C362 X.G366 C-G WC 19-XIX cWW cW-W [#15] -8 X.C431 X.G457 C-G WC 19-XIX cWW cW-W [#11] -9 X.G527 X.C554 G-C WC 19-XIX cWW cW-W [#64] -10 X.U576 X.A2045 U-A WC 20-XX cWW cW-W [#37] -11 X.U590 X.A1267 U-A WC 20-XX cWW cW-W [#18] -12 X.U605 X.A2060 U-A WC 20-XX cWW cW-W [#64] -13 X.C607 X.G620 C-G WC 19-XIX cWW cW-W [#64] -14 X.U609 X.A618 U-A WC 20-XX cWW cW-W [#20] -15 X.G630 X.U855 G-U Wobble 28-XXVIII cWW cW-W [#20] -16 X.G719 X.C851 G-C WC 19-XIX cWW cW-W [#25] -17 X.C743 X.G808 C-G WC 19-XIX cWW cW-W [#26] -18 X.U748 X.G773 U-G Wobble 28-XXVIII cWW cW-W [#59] -19 X.G774 X.C1801 G-C WC 19-XIX cWW cW-W -- -20 X.A797 X.U2636 A-U WC 20-XX cWW cW-W [#20] -21 X.G820 X.C836 G-C WC 19-XIX cWW cW-W -- -22 X.U829 X.A838 U-A WC 20-XX cWW cW-W [#28] -23 X.G907 X.C960 G-C WC 19-XIX cWW cW-W -- -24 X.G925 X.C942 G-C WC 19-XIX cWW cW-W [#36] -25 X.A1055 X.U1194 A-U WC 20-XX cWW cW-W [#33] -26 X.G1068 X.C1184 G-C WC 19-XIX cWW cW-W [#35] -27 X.C1093 X.G2778 C-G WC 19-XIX cWW cW-W -- -28 X.G1099 X.C1148 G-C WC 19-XIX cWW cW-W [#30] -29 X.C1235 X.G1288 C-G WC 19-XIX cWW cW-W [#38] -30 X.G1300 X.C2044 G-C WC 19-XIX cWW cW-W [#41] -31 X.U1350 X.A1647 U-A WC 20-XX cWW cW-W [#45] -32 X.A1390 X.U1416 A-U WC 20-XX cWW cW-W [#54] -33 X.G1485 X.U1598 G-U Wobble 28-XXVIII cWW cW-W [#80] -34 X.G1500 X.C2730 G-C WC 19-XIX cWW cW-W [#52] -35 X.G1528 X.C1547 G-C WC 19-XIX cWW cW-W [#52] -36 X.A1530 X.U1545 A-U WC 20-XX cWW cW-W [#54] -37 X.C1612 X.G1615 C-G WC 19-XIX cWW cW-W [#39] -38 X.A1713 X.U2020 A-U WC 20-XX cWW cW-W [#39] -39 X.G1718 X.C2017 G-C WC 19-XIX cWW cW-W [#56] -40 X.C1735 X.G1740 C-G WC 19-XIX cWW cW-W [#59] -41 X.U1737 X.A1856 U-A WC 20-XX cWW cW-W -- -42 X.U1757 X.A1773 U-A WC 20-XX cWW cW-W [#58] -43 X.C1779 X.G1783 C-G WC 19-XIX cWW cW-W [#62] -44 X.C1895 X.G1900 C-G WC 19-XIX cWW cW-W [#62] -45 X.G1960 X.C1994 G-C WC 19-XIX cWW cW-W [#62] -46 X.C1961 X.G1991 C-G WC 19-XIX cWW cW-W [#64] -47 X.A2047 X.U2061 A-U WC 20-XX cWW cW-W -- -48 X.C2126 X.G2217 C-G WC 19-XIX cWW cW-W [#67] -49 X.G2282 X.C2302 G-C WC 19-XIX cWW cW-W [#68] -50 X.G2309 X.C2454 G-C WC 19-XIX cWW cW-W [#73] -51 X.C2310 X.G2352 C-G WC 19-XIX cWW cW-W [#70] -52 X.C2324 X.G2348 C-G WC 19-XIX cWW cW-W [#73] -53 X.U2353 X.G2416 U-G Wobble 28-XXVIII cWW cW-W -- -54 X.C2386 X.G2455 C-G WC 19-XIX cWW cW-W [#74] -55 X.A2480 X.U2527 A-U WC 20-XX cWW cW-W [#75] -56 X.G2481 X.C2525 G-C WC 19-XIX cWW cW-W [#75] -57 X.A2486 X.U2520 A-U WC 20-XX cWW cW-W [#76] -58 X.C2534 X.G2609 C-G WC 19-XIX cWW cW-W [#76] -59 X.C2539 X.G2601 C-G WC 19-XIX cWW cW-W [#79] -60 X.C2653 X.G2804 C-G WC 19-XIX cWW cW-W [#80] -61 X.C2685 X.G2690 C-G WC 19-XIX cWW cW-W [#81] -62 X.C2816 X.G2913 C-G WC 19-XIX cWW cW-W [#85] -63 Y.C2 Y.G113 C-G WC 19-XIX cWW cW-W [#85] -64 Y.G5 Y.C110 G-C WC 19-XIX cWW cW-W [#85] -65 Y.A8 Y.U107 A-U WC 20-XX cWW cW-W [#86] -66 Y.C36 Y.G42 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 42 coaxial stacks 1 Helix#2 contains 6 stems: [#2,#3,#4,#5,#6,#18] 2 Helix#4 contains 5 stems: [#11,#9,#8,#16,#17] 3 Helix#6 contains 2 stems: [#13,#10] 4 Helix#7 contains 2 stems: [#14,#15] 5 Helix#8 contains 5 stems: [#21,#20,#22,#23,#24] 6 Helix#12 contains 2 stems: [#29,#30] 7 Helix#13 contains 3 stems: [#31,#28,#27] 8 Helix#14 contains 5 stems: [#25,#33,#34,#143,#142] 9 Helix#19 contains 2 stems: [#37,#38] 10 Helix#20 contains 3 stems: [#46,#47,#53] 11 Helix#21 contains 2 stems: [#40,#41] 12 Helix#22 contains 2 stems: [#42,#43] 13 Helix#26 contains 4 stems: [#50,#49,#51,#52] 14 Helix#27 contains 3 stems: [#55,#56,#57] 15 Helix#28 contains 3 stems: [#58,#59,#60] 16 Helix#30 contains 4 stems: [#62,#54,#74,#75] 17 Helix#34 contains 3 stems: [#69,#70,#71] 18 Helix#36 contains 5 stems: [#68,#66,#65,#64,#73] 19 Helix#37 contains 2 stems: [#76,#77] 20 Helix#39 contains 6 stems: [#78,#100,#101,#102,#106,#107] 21 Helix#41 contains 3 stems: [#82,#81,#99] 22 Helix#42 contains 2 stems: [#83,#84] 23 Helix#43 contains 2 stems: [#79,#80] 24 Helix#46 contains 4 stems: [#88,#131,#130,#129] 25 Helix#48 contains 3 stems: [#90,#85,#91] 26 Helix#51 contains 2 stems: [#96,#97] 27 Helix#54 contains 2 stems: [#95,#94] 28 Helix#59 contains 2 stems: [#108,#111] 29 Helix#62 contains 6 stems: [#117,#116,#115,#114,#113,#112] 30 Helix#66 contains 6 stems: [#123,#124,#125,#126,#127,#128] 31 Helix#71 contains 2 stems: [#137,#138] 32 Helix#72 contains 3 stems: [#140,#139,#141] 33 Helix#75 contains 3 stems: [#144,#145,#146] 34 Helix#76 contains 4 stems: [#147,#148,#149,#150] 35 Helix#78 contains 2 stems: [#152,#153] 36 Helix#79 contains 2 stems: [#121,#120] 37 Helix#80 contains 5 stems: [#156,#157,#158,#159,#160] 38 Helix#81 contains 4 stems: [#162,#161,#155,#154] 39 Helix#82 contains 3 stems: [#163,#164,#165] 40 Helix#83 contains 3 stems: [#166,#167,#168] 41 Helix#86 contains 2 stems: [#173,#174] 42 Helix#87 contains 3 stems: [#172,#171,#170] **************************************************************************** List of 541 base stacks Note: a stack is an ordered list of nucleotides assembled together via base-stacking interactions, regardless of backbone connectivity. Stacking interactions within a stem are *not* included. 1 nts=2 RU A.ARG14,X.U1737 2 nts=2 EU A.GLU201,X.U1847 3 nts=2 WG A.TRP213,X.G1613 4 nts=2 UU X.U8,X.U9 5 nts=2 AU X.A13,X.U570 6 nts=2 CU X.C32,X.U33 7 nts=2 GC X.G36,X.C37 8 nts=2 AG X.A48,X.G180 9 nts=2 UA X.U50,X.A176 10 nts=2 AC X.A56,X.C57 11 nts=2 AA X.A64,X.A65 12 nts=2 GU X.G70,X.U113 13 nts=2 AA X.A71,X.A73 14 nts=2 GC X.G75,X.C76 15 nts=2 GU X.G85,X.U98 16 nts=2 UA X.U89,X.A90 17 nts=2 AG X.A91,X.G92 18 nts=2 GA X.G120,X.A130 19 nts=2 GG X.G153,X.G177 20 nts=2 GC X.G181,X.C182 21 nts=2 CR X.C184,2.ARG37 22 nts=2 UC X.U203,X.C204 23 nts=2 AG X.A225,X.G227 24 nts=2 AU X.A231,X.U233 25 nts=2 CG X.C234,X.G235 26 nts=2 GC X.G287,X.C288 27 nts=2 AC X.A305,X.C306 28 nts=2 CU X.C310,X.U311 29 nts=2 AU X.A312,X.U404 30 nts=2 GA X.G317,X.A318 31 nts=2 AC X.A329,X.C330 32 nts=2 GG X.G338,X.G387 33 nts=2 CG X.C340,X.G341 34 nts=2 UA X.U344,X.A360 35 nts=2 CA X.C362,X.A363 36 nts=2 GA X.G366,X.A376 37 nts=2 AA X.A367,X.A368 38 nts=2 AC X.A375,X.C378 39 nts=2 AA X.A389,X.A390 40 nts=2 GG X.G409,X.G410 41 nts=2 CU X.C414,X.U415 42 nts=2 CG X.C450,X.G452 43 nts=2 GA X.G456,X.A2434 44 nts=2 AC X.A458,X.C459 45 nts=2 UC X.U462,X.C463 46 nts=2 GC X.G488,X.C490 47 nts=2 CG X.C491,X.G492 48 nts=2 AG X.A495,X.G496 49 nts=2 CY X.C502,Q.TYR68 50 nts=2 AU X.A503,X.U505 51 nts=2 GG X.G509,X.G513 52 nts=2 UG X.U521,X.G522 53 nts=2 AC X.A529,X.C530 54 nts=2 CG X.C533,X.G534 55 nts=2 GG X.G578,X.G604 56 nts=2 CG X.C587,X.G588 57 nts=2 UG X.U590,X.G1257 58 nts=2 UF X.U593,O.PHE21 59 nts=2 AA X.A629,X.A1292 60 nts=2 GC X.G630,X.C716 61 nts=2 UU X.U638,X.U639 62 nts=2 CA X.C644,X.A645 63 nts=2 AA X.A646,X.A700 64 nts=2 AG X.A655,X.G656 65 nts=2 AA X.A672,X.A682 66 nts=2 GG X.G673,X.G681 67 nts=2 GG X.G675,X.G679 68 nts=2 UG X.U686,X.G687 69 nts=2 UC X.U742,X.C743 70 nts=2 AG X.A756,X.G757 71 nts=2 GA X.G783,X.A784 72 nts=2 CA X.C785,X.A2008 73 nts=2 UU X.U792,X.U2640 74 nts=2 AA X.A796,X.A834 75 nts=2 AU X.A797,X.U1808 76 nts=2 GC X.G802,X.C803 77 nts=2 AA X.A809,X.A826 78 nts=2 AU X.A828,X.U830 79 nts=2 UG X.U852,X.G853 80 nts=2 GU X.G854,X.U855 81 nts=2 UA X.U873,X.A874 82 nts=2 AG X.A880,X.G881 83 nts=2 UG X.U889,X.G890 84 nts=2 AU X.A897,X.U898 85 nts=2 GC X.G909,X.C910 86 nts=2 CU X.C912,X.U913 87 nts=2 AC X.A920,X.C921 88 nts=2 GG X.G922,X.G924 89 nts=2 GA X.G944,X.A945 90 nts=2 AC X.A954,X.C957 91 nts=2 AU X.A969,X.U971 92 nts=2 UU X.U975,X.U976 93 nts=2 UG X.U999,X.G1000 94 nts=2 UW X.U1002,J.TRP41 95 nts=2 AA X.A1024,X.A1025 96 nts=2 AG X.A1027,X.G1028 97 nts=2 CF X.C1039,N.PHE57 98 nts=2 AG X.A1040,X.G1204 99 nts=2 CA X.C1049,X.A1187 100 nts=2 GA X.G1075,X.A1076 101 nts=2 GC X.G1081,X.C1082 102 nts=2 CC X.C1087,X.C1088 103 nts=2 CA X.C1089,X.A1155 104 nts=2 UC X.U1145,X.C1146 105 nts=2 GH X.G1175,G.HIS78 106 nts=2 UA X.U1176,X.A1177 107 nts=2 AA X.A1186,X.A1188 108 nts=2 UU X.U1193,X.U1194 109 nts=2 GA X.G1207,X.A1208 110 nts=2 GC X.G1234,X.C1235 111 nts=2 GG X.G1261,X.G1265 112 nts=2 GA X.G1290,X.A1291 113 nts=2 AA X.A1311,X.A1690 114 nts=2 AQ X.A1312,K.GLN12 115 nts=2 GG X.G1313,X.G1689 116 nts=2 CC X.C1331,X.C1332 117 nts=2 UG X.U1338,X.G1340 118 nts=2 GU X.G1347,X.U1348 119 nts=2 GG X.G1356,X.G1357 120 nts=2 CR X.C1362,P.ARG86 121 nts=2 CC X.C1368,X.C1370 122 nts=2 GG X.G1375,X.G1376 123 nts=2 UY X.U1377,Q.TYR58 124 nts=2 GG X.G1380,X.G1641 125 nts=2 GU X.G1385,X.U1386 126 nts=2 GG X.G1401,X.G1405 127 nts=2 AA X.A1422,X.A1440 128 nts=2 GU X.G1426,X.U1427 129 nts=2 GA X.G1429,X.A1430 130 nts=2 GG X.G1453,X.G1631 131 nts=2 AU X.A1459,X.U1460 132 nts=2 CG X.C1461,X.G1462 133 nts=2 GG X.G1473,X.G1615 134 nts=2 AU X.A1481,X.U1482 135 nts=2 UG X.U1493,X.G1494 136 nts=2 GU X.G1518,X.U1519 137 nts=2 AG X.A1521,X.G1561 138 nts=2 GG X.G1522,X.G1523 139 nts=2 GG X.G1555,X.G1556 140 nts=2 GA X.G1577,X.A1578 141 nts=2 UU X.U1597,X.U1598 142 nts=2 CA X.C1612,X.A1614 143 nts=2 CU X.C1624,X.U1625 144 nts=2 AU X.A1628,X.U1629 145 nts=2 GU X.G1645,X.U1646 146 nts=2 AC X.A1652,X.C1655 147 nts=2 CU X.C1714,X.U1715 148 nts=2 CG X.C1716,X.G1717 149 nts=2 AU X.A1726,X.U1784 150 nts=2 GG X.G1743,X.G1790 151 nts=2 UU X.U1762,X.U1763 152 nts=2 AC X.A1765,X.C1766 153 nts=2 CC X.C1768,X.C1769 154 nts=2 CA X.C1770,X.A1771 155 nts=2 CA X.C1781,X.A1782 156 nts=2 GC X.G1797,X.C1798 157 nts=2 AA X.A1812,X.A1814 158 nts=2 AA X.A1813,X.A1965 159 nts=2 UG X.U1828,X.G2230 160 nts=2 CG X.C1833,X.G1834 161 nts=2 UG X.U1854,X.G1855 162 nts=2 CU X.C1860,X.U1861 163 nts=2 GA X.G1869,X.A1928 164 nts=2 UU X.U1878,X.U1879 165 nts=2 CG X.C1914,X.G1915 166 nts=2 CC X.C1920,X.C1921 167 nts=2 CG X.C1929,X.G1930 168 nts=2 UG X.U1953,X.G1956 169 nts=2 AU X.A1964,X.U1966 170 nts=2 UU X.U1971,X.U1982 171 nts=2 AA X.A1979,X.A1980 172 nts=2 UC X.U1983,X.C1984 173 nts=2 GU X.G2002,X.U2003 174 nts=2 GU X.G2007,X.U2009 175 nts=2 UC X.U2022,X.C2023 176 nts=2 GG X.G2036,X.G2037 177 nts=2 GA X.G2059,X.A2599 178 nts=2 UU X.U2067,X.U2068 179 nts=2 AG X.A2087,X.G2529 180 nts=2 GG X.G2094,X.G2096 181 nts=2 GA X.G2097,X.A2098 182 nts=2 AA X.A2104,X.A2462 183 nts=2 CU X.C2112,X.U2113 184 nts=2 UU X.U2118,X.U2119 185 nts=2 CG X.C2241,X.G2242 186 nts=2 GA X.G2273,X.A2453 187 nts=2 CU X.C2275,X.U2276 188 nts=2 CG X.C2308,X.G2309 189 nts=2 CU X.C2322,X.U2323 190 nts=2 GG X.G2330,X.G2331 191 nts=2 CA X.C2344,X.A2345 192 nts=2 AG X.A2349,X.G2350 193 nts=2 GG X.G2357,X.G2358 194 nts=2 AG X.A2373,X.G2410 195 nts=2 GG X.G2397,X.G2398 196 nts=2 GG X.G2402,X.G2406 197 nts=2 CG X.C2431,X.G2432 198 nts=2 GG X.G2441,X.G2442 199 nts=2 GF X.G2455,I.PHE50 200 nts=2 AA X.A2477,X.A2478 201 nts=2 AC X.A2503,X.C2504 202 nts=2 UU X.U2519,X.U2520 203 nts=2 CA X.C2523,X.A2524 204 nts=2 GG X.G2532,X.G2603 205 nts=2 CG X.C2547,X.G2594 206 nts=2 UU X.U2555,X.U2557 207 nts=2 GU X.G2572,X.U2573 208 nts=2 UA X.U2574,X.A2593 209 nts=2 CU X.C2578,X.U2579 210 nts=2 AA X.A2591,X.A2592 211 nts=2 GG X.G2619,X.G2630 212 nts=2 GG X.G2622,X.G2626 213 nts=2 CG X.C2644,X.G2645 214 nts=2 GC X.G2652,X.C2653 215 nts=2 GG X.G2657,X.G2913 216 nts=2 UA X.U2716,X.A2740 217 nts=2 AG X.A2738,X.G2741 218 nts=2 AG X.A2752,X.G2754 219 nts=2 GG X.G2758,X.G2759 220 nts=2 AG X.A2785,X.G2786 221 nts=2 CC X.C2815,X.C2816 222 nts=2 CU X.C2819,X.U2820 223 nts=2 GG X.G2823,X.G2824 224 nts=2 CC X.C2834,X.C2835 225 nts=2 UA X.U2856,X.A2903 226 nts=2 GG X.G2858,X.G2859 227 nts=2 GG X.G2876,X.G2877 228 nts=2 UG X.U2885,X.G2886 229 nts=2 AG X.A2888,X.G2889 230 nts=2 AU X.A2919,X.U2920 231 nts=2 CA Y.C15,Y.A16 232 nts=2 CC Y.C28,Y.C29 233 nts=2 GA Y.G49,Y.A50 234 nts=2 AG Y.A51,Y.G52 235 nts=3 GAA X.G15,X.A14,X.A571 236 nts=3 GAA X.G42,X.A43,X.A44 237 nts=3 AAG X.A52,X.A53,X.G54 238 nts=3 AAA X.A61,X.A94,X.A95 239 nts=3 UUU X.U63,X.U60,X.U74 240 nts=3 CGA X.C66,X.G67,X.A68 241 nts=3 UAU X.U119,X.A150,X.U151 242 nts=3 GGR X.G122,X.G123,2.ARG20 243 nts=3 AGU X.A136,X.G137,X.U138 244 nts=3 AAA X.A226,X.A468,X.A469 245 nts=3 AAA X.A228,X.A229,X.A230 246 nts=3 GGC X.G245,X.G257,X.C256 247 nts=3 CGC X.C249,X.G250,X.C252 248 nts=3 AAG X.A265,X.A266,X.G267 249 nts=3 AAG X.A282,X.A281,X.G291 250 nts=3 AGU X.A302,X.G300,X.U467 251 nts=3 GUC X.G319,X.U401,X.C402 252 nts=3 UAA X.U321,X.A326,X.A325 253 nts=3 UAA X.U336,X.A388,X.A337 254 nts=3 CUG X.C348,X.U349,X.G350 255 nts=3 AUG X.A354,X.U371,X.G370 256 nts=3 UGG X.U374,X.G1247,X.G1276 257 nts=3 UGU X.U380,X.G381,X.U382 258 nts=3 GGG X.G418,X.G446,X.G445 259 nts=3 UGU X.U576,X.G2062,X.U2061 260 nts=3 AGF X.A577,X.G2048,N.PHE25 261 nts=3 AUA X.A591,X.U589,X.A1258 262 nts=3 UUF X.U632,X.U631,C.PHE90 263 nts=3 GUG X.G640,X.U706,X.G707 264 nts=3 GGU X.G647,X.G670,X.U671 265 nts=3 AAA X.A676,X.A677,X.A678 266 nts=3 GUG X.G774,X.U1802,X.G1803 267 nts=3 CGU X.C789,X.G790,X.U791 268 nts=3 UGA X.U807,X.G808,X.A810 269 nts=3 GGA X.G822,X.G820,X.A839 270 nts=3 AGA X.A824,X.G825,X.A827 271 nts=3 GAR X.G850,X.A199,I.ARG47 272 nts=3 GAA X.G875,X.A2475,X.A989 273 nts=3 CAG X.C883,X.A985,X.G986 274 nts=3 AAA X.A891,X.A977,X.A978 275 nts=3 AAU X.A923,X.A946,X.U947 276 nts=3 ACC X.A941,X.C942,X.C943 277 nts=3 GAC X.G1005,X.A2058,X.C2525 278 nts=3 GAA X.G1020,X.A1019,X.A1034 279 nts=3 GAC X.G1022,X.A1023,X.C1026 280 nts=3 UAA X.U1048,X.A1054,X.A1053 281 nts=3 ACG X.A1052,X.C1051,X.G1181 282 nts=3 AAA X.A1057,X.A1055,X.A1195 283 nts=3 AAG X.A1072,X.A1073,X.G1074 284 nts=3 GGC X.G1078,X.G1166,X.C1167 285 nts=3 GAC X.G1083,X.A1161,X.C1162 286 nts=3 GGG X.G1243,X.G1244,X.G1245 287 nts=3 UAA X.U1262,X.A1263,X.A1264 288 nts=3 GAC X.G1266,X.A1267,X.C1268 289 nts=3 CGC X.C1277,X.G1278,X.C1279 290 nts=3 AUR X.A1285,X.U1287,I.ARG18 291 nts=3 GGU X.G1304,X.G2039,X.U2038 292 nts=3 GUG X.G1318,X.U1319,X.G1320 293 nts=3 CGU X.C1335,X.G1336,X.U1683 294 nts=3 UAC X.U1349,X.A1647,X.C1648 295 nts=3 AAG X.A1358,X.A1359,X.G1360 296 nts=3 GAA X.G1369,X.A1653,X.A1660 297 nts=3 CAU X.C1382,X.A1379,X.U1434 298 nts=3 ACA X.A1402,X.C1403,X.A1404 299 nts=3 GAU X.G1418,X.A1419,X.U1420 300 nts=3 UAC X.U1431,X.A1432,X.C1435 301 nts=3 AGA X.A1575,X.G1574,X.A1592 302 nts=3 AAC X.A1605,X.A1607,X.C1608 303 nts=3 CUG X.C1651,X.U1665,X.G1664 304 nts=3 AUG X.A1673,X.U1674,X.G1675 305 nts=3 GCG X.G1695,X.C1696,X.G1697 306 nts=3 AAU X.A1709,X.A1708,X.U2753 307 nts=3 AAA X.A1733,X.A1744,X.A1745 308 nts=3 GGG X.G1751,X.G1783,X.G1780 309 nts=3 UUU X.U1755,X.U1756,X.U1757 310 nts=3 UUA X.U1804,X.U1805,X.A1811 311 nts=3 CAA X.C1809,X.A2614,X.A1810 312 nts=3 UAG X.U1825,X.A1846,X.G1826 313 nts=3 AAG X.A1836,X.A1837,X.G1838 314 nts=3 CGU X.C1863,X.G1862,X.U1958 315 nts=3 CAC X.C1864,X.A1926,X.C1865 316 nts=3 GAA X.G1873,X.A1874,X.A1875 317 nts=3 AAG X.A1927,X.A1997,X.G1999 318 nts=3 GGC X.G1934,X.G1933,X.C1952 319 nts=3 UAG X.U1967,X.A1963,X.G1972 320 nts=3 GGU X.G1976,X.G1977,X.U1978 321 nts=3 AAC X.A2004,X.A2005,X.C2006 322 nts=3 GAC X.G2031,X.A2032,X.C2033 323 nts=3 GUG X.G2054,X.U2055,X.G2056 324 nts=3 UUG X.U2101,X.U2102,X.G2265 325 nts=3 UGC X.U2108,X.G2264,X.C2263 326 nts=3 GAG X.G2110,X.A2109,X.G2266 327 nts=3 AGG X.A2232,X.G2247,X.G2248 328 nts=3 CUA X.C2236,X.U2237,X.A2239 329 nts=3 CAG X.C2253,X.A2254,X.G2255 330 nts=3 AAG X.A2260,X.A2261,X.G2262 331 nts=3 AAG X.A2300,X.A2301,X.G2303 332 nts=3 AAG X.A2313,X.A2314,X.G2316 333 nts=3 AGU X.A2315,X.G2352,X.U2353 334 nts=3 GAG X.G2326,X.A2325,X.G2348 335 nts=3 AAA X.A2336,X.A2337,X.A2338 336 nts=3 AAG X.A2379,X.A2393,X.G2394 337 nts=3 CCU X.C2382,X.C2383,X.U2384 338 nts=3 GCC X.G2418,X.C2451,X.C2449 339 nts=3 UAG X.U2506,X.A2505,X.G2556 340 nts=3 CUG X.C2539,X.U2538,X.G2605 341 nts=3 AGC X.A2540,X.G2601,X.C2602 342 nts=3 GAG X.G2550,X.A2792,X.G2570 343 nts=3 AUU X.A2588,X.U2589,X.U2590 344 nts=3 UGC X.U2607,X.G2608,X.C2637 345 nts=3 GGG X.G2615,X.G2634,X.G2635 346 nts=3 GAG X.G2670,X.A2671,X.G2672 347 nts=3 GAC X.G2701,X.A2702,X.C2703 348 nts=3 UCU X.U2709,X.C2710,X.U2711 349 nts=3 ACG X.A2760,X.C2761,X.G2762 350 nts=3 CCC X.C2796,X.C2797,X.C2798 351 nts=3 AAG X.A2839,X.A2841,X.G2842 352 nts=3 GAG X.G2863,X.A2864,X.G2865 353 nts=3 AAG X.A2870,X.A2871,X.G2872 354 nts=3 UGA X.U2878,X.G2879,X.A2880 355 nts=3 UCG X.U2904,X.C2905,X.G2906 356 nts=3 AGG Y.A17,Y.G18,Y.G19 357 nts=3 AGA Y.A37,Y.G42,Y.A46 358 nts=3 CUU Y.C60,Y.U61,Y.U62 359 nts=4 UAAA X.U11,X.A10,X.A2656,X.A2914 360 nts=4 GAAG X.G35,X.A500,X.A493,X.G519 361 nts=4 AAUC X.A84,X.A102,X.U103,X.C104 362 nts=4 GAUU X.G109,X.A110,X.U111,X.U112 363 nts=4 UAUG X.U139,X.A140,X.U141,X.G142 364 nts=4 ACAU X.A164,X.C165,X.A166,X.U167 365 nts=4 AGCA X.A168,X.G169,X.C170,X.A171 366 nts=4 GAGG X.G190,X.A191,X.G192,X.G208 367 nts=4 GGAG X.G251,X.G253,X.A254,X.G255 368 nts=4 AAAG X.A275,X.A274,X.A273,X.G416 369 nts=4 UGAA X.U433,X.G434,X.A436,X.A435 370 nts=4 UUAG X.U439,X.U438,X.A437,X.G457 371 nts=4 AGGU X.A581,X.G582,X.G598,X.U597 372 nts=4 GAAU X.G584,X.A583,X.A599,X.U600 373 nts=4 GAAC X.G616,X.A615,X.A2060,X.C2063 374 nts=4 UGUG X.U663,X.G664,X.U650,X.G665 375 nts=4 AAAG X.A688,X.A689,X.A691,X.G692 376 nts=4 AAAC X.A720,X.A721,X.A722,X.C723 377 nts=4 GAAA X.G729,X.A819,X.A730,X.A734 378 nts=4 CGAG X.C777,X.G778,X.A806,X.G805 379 nts=4 UGCC X.U829,X.G837,X.C2467,X.C2468 380 nts=4 CGGU X.C857,X.G1288,X.G1236,X.U1237 381 nts=4 AAAG X.A1001,X.A1003,X.A1004,X.G1006 382 nts=4 CGAU X.C1015,X.G1016,X.A1017,X.U1227 383 nts=4 CUGC X.C1042,X.U1043,X.G1198,X.C1197 384 nts=4 AAGC X.A1071,X.A1170,X.G1169,X.C1168 385 nts=4 GGCU X.G1091,X.G1154,X.C1153,X.U1152 386 nts=4 ACAA X.A1092,X.C1093,X.A1094,X.A1095 387 nts=4 CUAG X.C1096,X.U1097,X.A1098,X.G1099 388 nts=4 AAAA X.A1171,X.A2545,X.A1172,X.A1173 389 nts=4 GAAA X.G1253,X.A1252,X.A1251,X.A1275 390 nts=4 CUGC X.C1388,X.U1389,X.G1414,X.C1413 391 nts=4 UGGC X.U1394,X.G1395,X.G1408,X.C1407 392 nts=4 GUAG X.G1397,X.U1409,X.A1410,X.G1411 393 nts=4 GAAG X.G1465,X.A1463,X.A1626,X.G1627 394 nts=4 GAUU X.G1484,X.A1483,X.U1601,X.U1603 395 nts=4 CGGC X.C1495,X.G1496,X.G2729,X.C2730 396 nts=4 AGUA X.A1527,X.G1528,X.U1529,X.A1530 397 nts=4 CUGA X.C1557,X.U1558,X.G1559,X.A1560 398 nts=4 CAAA X.C1669,X.A1670,X.A1337,X.A1678 399 nts=4 AAAG X.A1671,X.A1684,X.A1685,X.G1686 400 nts=4 ACUC X.A1734,X.C1735,X.U1736,X.C1738 401 nts=4 AAUA X.A1786,X.A1787,X.U1788,X.A1789 402 nts=4 CAAC X.C1801,X.A1800,X.A1856,X.C1857 403 nts=4 CAAA X.C1827,X.A1829,X.A1830,X.A1831 404 nts=4 CGAA X.C1961,X.G1960,X.A1959,X.A1996 405 nts=4 CGGU X.C2070,X.G2804,X.G2654,X.U2655 406 nts=4 UUGA X.U2103,X.U2623,X.G2624,X.A2625 407 nts=4 GAAC X.G2120,X.A2252,X.A2226,X.C2227 408 nts=4 AUUC X.A2123,X.U2124,X.U2125,X.C2126 409 nts=4 GCAU X.G2286,X.C2454,X.A2452,X.U2450 410 nts=4 CGGG X.C2377,X.G2378,X.G2392,X.G2380 411 nts=4 GGCG X.G2399,X.G2372,X.C2374,X.G2409 412 nts=4 AAAR X.A2405,X.A2404,X.A2403,L.ARG96 413 nts=4 GAAG X.G2437,X.A2438,X.A2439,X.G2440 414 nts=4 CAGG X.C2479,X.A2480,X.G2481,X.G2482 415 nts=4 UUGG X.U2484,X.U2485,X.G2517,X.G2516 416 nts=4 CUAG X.C2488,X.U2487,X.A2486,X.G2521 417 nts=4 UGAC X.U2664,X.G2665,X.A2802,X.C2801 418 nts=4 UUAU X.U2679,X.U2680,X.A2681,X.U2683 419 nts=4 UGGG X.U2714,X.G2715,X.G2746,X.G2745 420 nts=4 UGGR X.U2867,X.G2868,X.G2887,M.ARG23 421 nts=4 AUUG Y.A13,Y.U106,Y.U107,Y.G108 422 nts=4 AGGU Y.A20,Y.G21,Y.G22,Y.U54 423 nts=4 CACA Y.C24,Y.A25,Y.C26,Y.A27 424 nts=4 UCCC Y.U33,Y.C34,Y.C35,Y.C36 425 nts=5 GGGAG X.G45,X.G218,X.G217,X.A216,X.G215 426 nts=5 GGGGU X.G81,X.G82,X.G83,X.G101,X.U99 427 nts=5 UUAAG X.U238,X.U237,X.A236,X.A224,X.G269 428 nts=5 CUUAU X.C241,X.U242,X.U243,X.A244,X.U246 429 nts=5 AAAAG X.A343,X.A342,X.A365,X.A383,X.G384 430 nts=5 CAAAU X.C421,X.A420,X.A447,X.A448,X.U449 431 nts=5 AGCCA X.A427,X.G428,X.C429,X.C431,X.A430 432 nts=5 GAGUG X.G541,X.A542,X.G543,X.U544,X.G545 433 nts=5 GAAAG X.G653,X.A652,X.A651,X.A666,X.G667 434 nts=5 AAGGR X.A713,X.A715,X.G714,X.G846,C.ARG54 435 nts=5 GAAAC X.G745,X.A744,X.A779,X.A780,X.C781 436 nts=5 GAGAU X.G901,X.A902,X.G903,X.A2295,X.U905 437 nts=5 GGCCA X.G904,X.G961,X.C960,X.C959,X.A911 438 nts=5 GAAAG X.G1046,X.A1045,X.A1044,X.A1199,X.G1201 439 nts=5 GGCGU X.G1182,X.G1183,X.C1184,X.G1066,X.U1185 440 nts=5 UGGGU X.U1248,X.G1250,X.G1274,X.G1273,X.U1272 441 nts=5 GGAUR X.G1294,X.G628,X.A1289,X.U856,I.ARG21 442 nts=5 AUCGG X.A1324,X.U1325,X.C1364,X.G1365,X.G1361 443 nts=5 GAAAG X.G1346,X.A1345,X.A1344,X.A1666,X.G1667 444 nts=5 GAAAG X.G1392,X.A1391,X.A1390,X.A1415,X.G1417 445 nts=5 GGGAC X.G1468,X.G1469,X.G1470,X.A1471,X.C1472 446 nts=5 GUAGG X.G1476,X.U1477,X.A1478,X.G1479,X.G1480 447 nts=5 UAAGC X.U1512,X.A1513,X.A1514,X.G1515,X.C1516 448 nts=5 ACCGG X.A1658,X.C1659,X.C1661,X.G1657,X.G1663 449 nts=5 AGAUU X.A1676,X.G1677,X.A1679,X.U1680,X.U1681 450 nts=5 CACAG X.C1815,X.A1816,X.C1817,X.A1818,X.G1819 451 nts=5 UGAGU X.U1840,X.G1841,X.A1842,X.G1844,X.U1845 452 nts=5 UCCCA X.U1970,X.C1969,X.C1968,X.C1992,X.A1993 453 nts=5 CAAAG X.C2077,X.A2078,X.A2641,X.A2604,X.G2083 454 nts=5 GGGCU X.G2127,X.G2217,X.G2218,X.C2219,X.U2220 455 nts=5 CUGAG X.C2223,X.U2224,X.G2251,X.A2250,X.G2249 456 nts=5 UAAAG X.U2346,X.A2347,X.A2360,X.A2362,X.G2364 457 nts=5 ACAAG X.A2385,X.C2386,X.A2387,X.A2388,X.G2389 458 nts=5 CCUAG X.C2422,X.C2421,X.U2420,X.A2419,X.G2456 459 nts=5 GCGUC X.G2473,X.C2528,X.G2474,X.U2527,X.C2526 460 nts=5 CCAGC X.C2493,X.C2494,X.A2495,X.G2508,X.C2507 461 nts=5 GAACG X.G2497,X.A2496,X.A2509,X.C2510,X.G2511 462 nts=5 AGCUU X.A2498,X.G2499,X.C2502,X.U2501,X.U2500 463 nts=5 GGGUU X.G2535,X.G2609,X.G2610,X.U2611,X.U2612 464 nts=5 CAUAC X.C2544,X.A2569,X.U2546,X.A2568,X.C2567 465 nts=5 AGUCG X.A2558,X.G2559,X.U2560,X.C2561,X.G2562 466 nts=5 GUUCG X.G2580,X.U2581,X.U2582,X.C2583,X.G2584 467 nts=5 GAAAG X.G2667,X.A2666,X.A2805,X.A2803,X.G2809 468 nts=5 CGAAG X.C2718,X.G2892,X.A2893,X.A2748,X.G2749 469 nts=5 GAUGU X.G2764,X.A2765,X.U2766,X.G2790,X.U2789 470 nts=5 AAAAA X.A2817,X.A2912,X.A2911,X.A2829,X.A2830 471 nts=5 UAUGG X.U2826,X.A2827,X.U2828,X.G2910,X.G2831 472 nts=5 UAAAU X.U2852,X.A2854,X.A2899,X.A2855,X.U2898 473 nts=5 GGACG Y.G14,Y.G67,Y.A68,Y.C69,Y.G70 474 nts=5 CCAAC Y.C40,Y.C41,Y.A43,Y.A44,Y.C45 475 nts=5 AAGGU Y.A55,Y.A56,Y.G57,Y.G58,Y.U59 476 nts=5 AUGGU Y.A71,Y.U72,Y.G73,Y.G74,Y.U75 477 nts=6 CCAACU X.C187,X.C186,X.A185,X.A183,X.C481,X.U482 478 nts=6 GGGUCG X.G295,X.G296,X.G297,X.U298,X.C272,X.G470 479 nts=6 ACAAAA X.A324,X.C323,X.A268,X.A474,X.A475,X.A476 480 nts=6 GGUCUC X.G331,X.G396,X.U397,X.C398,X.U399,X.C400 481 nts=6 UAGGGG X.U497,X.A499,X.G498,X.G504,X.G515,X.G514 482 nts=6 CAAAAC X.C501,X.A518,X.A517,X.A516,X.A506,X.C507 483 nts=6 AGUACU X.A512,X.G511,X.U510,X.A833,X.C732,X.U733 484 nts=6 AGUGAU X.A622,X.G1300,X.U1301,X.G1302,X.A1303,X.U1305 485 nts=6 GCGGUU X.G694,X.C695,X.G696,X.G683,X.U697,X.U698 486 nts=6 UUGGGU X.U747,X.U748,X.G749,X.G771,X.G770,X.U769 487 nts=6 GAAAGA X.G752,X.A751,X.A750,X.A772,X.G773,X.A775 488 nts=6 GAAAAG X.G990,X.A866,X.A865,X.A864,X.A1228,X.G1229 489 nts=6 AAUGGC X.A1064,X.A1065,X.U1067,X.G1068,X.G1069,X.C1179 490 nts=6 UAAAAU X.U1077,X.A2777,X.A2776,X.A2775,X.A2784,X.U2783 491 nts=6 AAAAGQ X.A1310,X.A1662,X.A794,X.A795,X.G793,P.GLN90 492 nts=6 CUGCAU X.C1342,X.U1343,X.G1650,X.C1649,X.A1654,X.U1350 493 nts=6 AGGCAA X.A1502,X.G1501,X.G1500,X.C2731,X.A2732,X.A2733 494 nts=6 AAAAGC X.A1616,X.A1617,X.A1618,X.A1619,X.G1620,X.C1621 495 nts=6 GGUCAC X.G1710,X.G1711,X.U2018,X.C2017,X.A2016,X.C2015 496 nts=6 GAUCGA X.G1718,X.A1712,X.U2020,X.C2021,X.G2019,X.A2024 497 nts=6 GGGGAA X.G1761,X.G1760,X.G1759,X.G1772,X.A1773,X.A1774 498 nts=6 GAAAAG X.G1882,X.A1881,X.A1880,X.A1916,X.A1917,X.G1918 499 nts=6 AGGGCA X.A1883,X.G1884,X.G1885,X.G1910,X.C1909,X.A1908 500 nts=6 UGAAAU X.U1888,X.G1887,X.A1886,X.A1911,X.A1912,X.U1913 501 nts=6 UUGCGU X.U1891,X.U1892,X.G1902,X.C1901,X.G1900,X.U1896 502 nts=6 CGAAAG X.C1895,X.G1894,X.A1893,X.A1903,X.A1904,X.G1905 503 nts=6 UUAAAA X.U2272,X.U2271,X.A2461,X.A202,X.A2460,X.A2459 504 nts=6 GGGCGG X.G2278,X.G2279,X.G2280,X.C2281,X.G2282,X.G2283 505 nts=6 UCGAAA X.U2311,X.C2310,X.G2416,X.A2415,X.A2354,X.A2355 506 nts=6 GGGAGA X.G2682,X.G2691,X.G2690,X.A2689,X.G2688,X.A2687 507 nts=6 GAAAGC X.G2769,X.A2768,X.A2767,X.A2791,X.G2793,X.C2794 508 nts=6 CUGUAC X.C2772,X.U2773,X.G2774,X.U2781,X.A2780,X.C2779 509 nts=6 UGGGGC Y.U6,Y.G5,Y.G4,Y.G112,Y.G113,Y.C114 510 nts=6 CAGCCA Y.C9,Y.A8,Y.G7,Y.C109,Y.C110,Y.A111 511 nts=6 ACUUCC Y.A85,Y.C86,Y.U88,Y.U89,Y.C90,Y.C91 512 nts=7 CGAAAAA X.C115,X.G116,X.A118,X.A117,X.A49,X.A179,X.A178 513 nts=7 UCAAACC X.U196,X.C195,X.A194,X.A193,X.A210,X.C211,X.C212 514 nts=7 GAAAACG X.G248,X.A247,X.A258,X.A259,X.A260,X.C261,X.G262 515 nts=7 AAAAAGA X.A372,X.A523,X.A524,X.A526,X.A525,X.G527,X.A552 516 nts=7 CGAUAAG X.C718,X.G719,X.A849,X.U848,X.A847,X.A845,X.G844 517 nts=7 GAAAAUC X.G1307,X.A1306,X.A2040,X.A2041,X.A2042,X.U2043,X.C2044 518 nts=7 GCGACGU X.G1490,X.C1491,X.G1492,X.A1507,X.C1506,X.G1505,X.U1504 519 nts=7 CGUAGGG X.C1730,X.G1731,X.U1732,X.A1742,X.G1741,X.G1740,X.G1739 520 nts=7 GGCGGCC X.G1957,X.G1995,X.C1994,X.G1991,X.G1962,X.C1989,X.C1988 521 nts=7 AAAACUA X.A2050,X.A574,X.A2069,X.A573,X.C572,X.U2806,X.A2808 522 nts=7 GAAAGCC X.G2084,X.A2085,X.A2086,X.A2530,X.G2088,X.C2090,X.C2091 523 nts=7 CUAUGGA X.C2291,X.U2292,X.A2293,X.U2299,X.G2298,X.G2297,X.A2296 524 nts=7 GCAACCG X.G2686,X.C2685,X.A2684,X.A2692,X.C2693,X.C2694,X.G2695 525 nts=8 GUGGGUCG X.G24,X.U25,X.G26,X.G27,X.G557,X.U556,X.C555,X.G520 526 nts=8 CGUAAAAC X.C31,X.G30,X.U29,X.A28,X.A558,X.A559,X.A560,X.C561 527 nts=8 UGAUAUGA X.U612,X.G613,X.A2057,X.U614,X.A618,X.U619,X.G620,X.A621 528 nts=8 CGGGAGAC X.C862,X.G863,X.G1226,X.G1225,X.A1018,X.G1033,X.A1032,X.C1031 529 nts=8 AGAAAUGC X.A908,X.G907,X.A906,X.A962,X.A963,X.U964,X.G965,X.C966 530 nts=8 CAAAUGAU X.C1700,X.A1699,X.A1698,X.A2843,X.U2844,X.G2845,X.A2846,X.U2847 531 nts=8 GUAAAACH X.G1725,X.U1724,X.A1723,X.A1722,X.A1721,X.A1720,X.C1719,B.HIS143 532 nts=9 CUGAGAAAC X.C472,X.U473,X.G223,X.A222,X.G221,X.A220,X.A219,X.A478,X.C479 533 nts=9 GAAGAGUAC X.G538,X.A537,X.A536,X.G535,X.A1321,X.G1322,X.U1366,X.A1323,X.C1326 534 nts=9 CGAGGCGGA X.C1508,X.G1509,X.A1488,X.G1596,X.G1487,X.C1486,X.G1485,X.G1599,X.A1600 535 nts=9 UCGGUACUC X.U1540,X.C1542,X.G1543,X.G1544,X.U1545,X.A1546,X.C1547,X.U1548,X.C1549 536 nts=9 GUGAUGGGA X.G1564,X.U1565,X.G1566,X.A1567,X.U1568,X.G1570,X.G1571,X.G1572,X.A1573 537 nts=9 UUCAAGCUA Y.U84,Y.U83,Y.C82,Y.A81,Y.A80,Y.G92,Y.C93,Y.U94,Y.A95 538 nts=10 UAUUGACAAU X.U209,X.A207,X.U206,X.U205,X.G197,X.A198,X.C201,X.A200,X.A2457,X.U872 539 nts=10 UUUCCGAUAU X.U611,X.U610,X.U609,X.C608,X.C607,X.G606,X.A2045,X.U2046,X.A2047,X.U2049 540 nts=11 GAAAGAAAAGC X.G355,X.A353,X.A373,X.A352,X.G351,X.A546,X.A547,X.A550,X.A548,X.G551,X.C528 541 nts=15 UGACAAGAUGAGAGC Y.U63,Y.G105,Y.A64,Y.C104,Y.A103,Y.A102,Y.G101,Y.A100,Y.U99,Y.G98,Y.A97,Y.G96,Y.A76,Y.G77,Y.C78 **************************************************************************** Nucleotides not involved in stacking interactions nts=178 AUUCCGUUAAAUCUAUUCUUUUUUUUAGAUAUGUUUUACAAUAAUCUGCUCUCACUGGUUAAUCCUACCUAUCGAUUUUGCGUCUCAUUCUUAAUUUGACGUGAGGUUCCAAAUCGUAAGUAUUCAACCCAUUACUUCACUUGUCUAUUCUAUUUCCAUCAUCGUAUGCCUCUAUUUG X.A2,X.U12,X.U34,X.C46,X.C47,X.G51,X.U87,X.U100,X.A124,X.A125,X.A126,X.U143,X.C144,X.U159,X.A162,X.U163,X.U232,X.C284,X.U285,X.U286,X.U290,X.U299,X.U301,X.U309,X.U313,X.U320,X.A322,X.G328,X.A364,X.U403,X.A411,X.U412,X.G432,X.U451,X.U477,X.U494,X.U549,X.A553,X.C554,X.A592,X.A617,X.U657,X.A658,X.A659,X.U699,X.C710,X.U731,X.G758,X.C764,X.U765,X.C821,X.U835,X.C836,X.A838,X.C851,X.U892,X.G925,X.G938,X.U939,X.U940,X.A955,X.A956,X.U970,X.C988,X.C1035,X.U1063,X.A1090,X.C1144,X.C1148,X.U1149,X.A1150,X.U1174,X.C1178,X.G1180,X.A1200,X.U1215,X.U1217,X.U1249,X.U1259,X.G1286,X.C1296,X.G1309,X.U1339,X.C1351,X.U1378,X.C1387,X.A1421,X.U1428,X.U1433,X.C1452,X.U1454,X.U1464,X.A1489,X.A1497,X.U1498,X.U1503,X.U1510,X.G1526,X.A1539,X.C1541,X.G1550,X.U1551,X.G1569,X.A1576,X.G1591,X.G1593,X.U1594,X.U1602,X.C1604,X.C1606,X.A1630,X.A1632,X.A1635,X.U1636,X.C1642,X.G1691,X.U1701,X.A1758,X.A1764,X.G1785,X.U1806,X.A1807,X.U1835,X.U1843,X.C1932,X.A1954,X.A1955,X.C1990,X.C2035,X.C2082,X.A2089,X.U2095,X.U2222,X.A2225,X.C2228,X.U2238,X.U2240,X.C2290,X.A2294,X.C2324,X.U2332,X.U2333,X.G2334,X.U2339,X.C2340,X.U2361,X.A2363,X.U2417,X.U2429,X.C2433,X.U2458,X.A2466,X.U2476,X.U2518,X.U2533,X.C2600,X.C2613,X.A2629,X.U2636,X.C2638,X.A2717,X.U2739,X.C2782,X.G2807,X.U2821,X.A2840,X.U2853,X.G2869,X.C2881,X.C2894,Y.U1,Y.C2,Y.U10,Y.A11,Y.U12,Y.U23,Y.U38,Y.G39 **************************************************************************** List of 192 atom-base capping interactions dv: vertical distance of the atom above the nucleotide base ----------------------------------------------------------- type atom nt dv 1 sugar O2'@X.G2652 X.A14 3.44 2 sugar O4'@X.U59 X.A73 3.04 3 sugar O4'@X.U99 X.G101 3.21 4 sugar O4'@X.A56 X.A126 3.22 5 phosphate OP2@X.A140 X.U138 2.91 6 sugar O4'@X.G120 X.U149 3.25 7 sugar O4'@X.U119 X.A150 3.27 8 sugar O4'@X.U196 X.C195 3.49 9 sugar O4'@X.G454 X.A226 3.16 10 sugar O4'@X.A229 X.A228 3.31 11 phosphate O5'@X.A231 X.A231 3.32 12 sugar O4'@X.U233 X.A231 2.95 13 sugar O2'@X.C234 X.G235 2.55 14 sugar O2'@X.C284 X.G283 3.05 15 phosphate OP1@X.U286 X.C284 2.86 16 sugar O4'@X.U377 X.A343 3.08 17 phosphate OP2@X.A352 X.G350 2.88 18 sugar O2'@X.U382 X.A367 3.40 19 sugar O2'@X.A352 X.A372 2.83 20 sugar O4'@X.A354 X.A375 2.77 21 sugar O2'@X.G80 X.A389 3.21 22 sugar O2'@X.G626 X.U494 3.45 23 phosphate OP2@X.G511 X.G509 3.04 24 phosphate OP2@X.A524 X.G522 3.08 25 sugar O4'@X.G527 X.A525 2.90 26 phosphate OP2@X.A536 X.G534 3.04 27 phosphate OP2@X.A547 X.G545 3.13 28 sugar O4'@X.U521 X.C554 3.10 29 sugar O4'@X.A552 X.C554 2.99 30 sugar O4'@X.C572 X.A573 3.10 31 phosphate O5'@X.U576 X.A577 3.38 32 sugar O4'@X.U576 X.A577 3.33 33 sugar O4'@X.G594 X.A592 3.33 34 sugar O4'@X.C2063 X.U605 3.01 35 phosphate OP2@X.G613 X.U611 2.85 36 sugar O2'@X.A2057 X.G616 2.92 37 sugar O4'@X.A2045 X.A621 3.19 38 sugar O4'@X.U855 X.A629 3.45 39 sugar O4'@X.C716 X.G630 3.03 40 sugar O4'@X.U40 X.A658 2.99 41 sugar O4'@X.G667 X.A666 3.06 42 phosphate OP2@X.A677 X.G675 3.29 43 sugar O4'@X.C2443 X.A676 3.29 44 sugar O4'@X.U697 X.A682 3.27 45 phosphate OP2@X.A689 X.G687 3.10 46 sugar O4'@X.A833 X.C732 3.33 47 sugar O4'@X.U1808 X.A797 2.83 48 sugar O4'@X.U807 X.G808 2.89 49 sugar O4'@X.U1804 X.A826 3.00 50 sugar O4'@X.A827 X.A828 3.00 51 sugar O4'@X.U830 X.A828 2.85 52 sugar O4'@X.G837 X.A838 3.30 53 sugar O4'@X.A847 X.A845 3.16 54 phosphate OP1@X.U2095 X.G850 3.18 55 sugar O2'@X.A849 X.C851 3.21 56 phosphate O5'@X.U872 X.U873 3.30 57 sugar O2'@X.U873 X.A874 3.49 58 phosphate O3'@X.U873 X.G876 3.42 59 phosphate OP1@X.A874 X.G876 3.32 60 sugar O4'@X.A891 X.U892 2.87 61 sugar O4'@X.A985 X.G984 3.42 62 sugar O4'@X.A2486 X.A1001 3.23 63 sugar O4'@X.G1006 X.A1004 3.46 64 sugar O4'@X.U2055 X.A1025 3.11 65 sugar O4'@X.U1048 X.A1054 3.03 66 sugar O2'@X.U1048 X.A1054 3.47 67 sugar O4'@X.A1064 X.A1065 2.94 68 sugar O4'@X.C1089 X.G1091 2.87 69 sugar O4'@X.G2597 X.A1173 2.91 70 sugar O4'@X.C2052 X.G1175 3.33 71 sugar O4'@X.U2053 X.A1177 3.12 72 sugar O4'@X.U1185 X.A1186 3.31 73 sugar O4'@X.G1020 X.A1200 3.49 74 phosphate O5'@X.U1217 X.G1218 3.48 75 sugar O4'@X.U589 X.A1258 2.91 76 sugar O4'@X.G595 X.A1258 2.99 77 phosphate OP2@X.A1263 X.G1261 3.09 78 sugar O4'@X.C1235 X.A1264 2.88 79 sugar O2'@X.C1235 X.A1264 3.47 80 sugar O4'@X.C608 X.A1291 3.39 81 sugar O2'@X.A1310 X.A1311 3.31 82 sugar O2'@X.A1333 X.A1312 3.41 83 phosphate OP2@X.G1322 X.G1320 3.34 84 sugar O2'@X.G1693 X.A1324 3.49 85 sugar O4'@X.C1335 X.U1339 3.25 86 sugar O4'@X.C1308 X.C1362 3.24 87 sugar O2'@X.C1692 X.U1363 3.19 88 sugar O4'@X.A1647 X.U1377 3.00 89 sugar O4'@X.G1398 X.G1397 3.24 90 sugar O4'@X.G1405 X.A1404 3.22 91 sugar O4'@X.U1381 X.A1421 3.26 92 phosphate OP2@X.A1430 X.U1428 3.13 93 phosphate OP2@X.C1423 X.U1433 3.08 94 phosphate OP2@X.A1617 X.A1471 3.30 95 sugar O4'@X.A1471 X.C1472 3.44 96 phosphate OP2@X.A1616 X.C1472 3.43 97 sugar O2'@X.U1504 X.G1505 3.37 98 sugar O2'@X.G1526 X.A1527 3.11 99 phosphate OP1@X.U1625 X.C1541 3.34 100 sugar O4'@X.U1568 X.G1570 2.87 101 sugar O2'@X.G1593 X.U1594 2.65 102 phosphate OP1@X.U1378 X.U1646 3.22 103 sugar O2'@X.U1350 X.A1654 3.34 104 sugar O4'@X.C1649 X.A1654 2.78 105 phosphate OP2@X.C1362 X.A1660 3.48 106 phosphate OP2@X.G1677 X.G1675 3.05 107 sugar O4'@X.A2843 X.A1698 3.08 108 sugar O4'@X.A1712 X.A1713 2.89 109 phosphate OP2@X.G1717 X.U1715 3.06 110 sugar O4'@X.G2609 X.C1716 3.04 111 sugar O4'@X.C1738 X.G1739 3.11 112 sugar O4'@X.A1745 X.A1744 3.31 113 sugar O2'@X.U1732 X.A1745 3.12 114 phosphate OP2@X.U1784 X.U1750 3.01 115 phosphate OP2@X.A1782 X.G1780 3.39 116 sugar O4'@X.G2744 X.C1781 3.17 117 sugar O2'@X.U2722 X.G1785 3.33 118 sugar O4'@X.A1726 X.A1789 3.26 119 sugar O4'@X.G1803 X.U1802 3.45 120 sugar O2'@X.U1805 X.U1806 3.48 121 sugar O4'@X.A1846 X.A1848 3.48 122 sugar O4'@X.C1857 X.A1856 3.36 123 sugar O4'@X.U1821 X.A1927 3.02 124 sugar O2'@X.G1962 X.A1964 3.45 125 sugar O4'@X.A1963 X.U1967 3.03 126 phosphate OP2@X.C1992 X.U1967 2.90 127 sugar O4'@X.G1972 X.U1970 2.97 128 phosphate OP2@X.A1980 X.U1978 3.26 129 sugar O4'@X.G2577 X.A1980 3.16 130 sugar O4'@X.U1861 X.A1996 2.89 131 sugar O4'@X.C785 X.A2008 3.12 132 sugar O4'@X.A622 X.C2044 3.36 133 sugar O2'@X.C2643 X.U2049 3.27 134 sugar O2'@X.G2481 X.G2059 3.15 135 sugar O4'@X.A200 X.U2095 3.15 136 sugar O2'@X.U1828 X.G2230 2.75 137 sugar O4'@X.A1410 X.A2239 3.18 138 phosphate OP1@X.G2279 X.U2276 3.37 139 sugar O2'@X.A2477 X.G2278 3.33 140 sugar O4'@X.A2293 X.A2294 3.30 141 sugar O2'@X.C966 X.A2296 3.15 142 sugar O4'@X.G2303 X.A2301 3.47 143 phosphate OP1@X.G2277 X.C2302 3.27 144 sugar O4'@X.A2313 X.A2314 3.22 145 sugar O4'@X.C2312 X.A2315 2.98 146 sugar O2'@X.C2312 X.A2315 3.37 147 sugar O4'@X.U2346 X.A2347 2.88 148 sugar O4'@X.A2360 X.A2362 3.13 149 sugar O4'@X.C2359 X.A2363 3.04 150 sugar O4'@X.C2377 X.G2376 3.45 151 sugar O4'@X.G2394 X.A2393 3.41 152 phosphate OP2@X.A2404 X.G2402 3.03 153 sugar O4'@X.C2308 X.A2415 3.22 154 sugar O2'@X.C2454 X.G2418 3.47 155 sugar O4'@X.U2450 X.A2452 3.17 156 sugar O4'@X.G2286 X.C2454 3.31 157 sugar O4'@X.A2452 X.C2454 2.80 158 sugar O4'@X.G2455 X.G2456 3.34 159 phosphate OP2@X.A2460 X.U2458 3.44 160 sugar O4'@X.U2271 X.A2461 3.26 161 phosphate OP2@X.A2496 X.A2503 3.35 162 sugar O2'@X.U619 X.G2529 2.94 163 sugar O4'@X.G2088 X.A2530 3.13 164 sugar O4'@X.U2557 X.U2555 3.20 165 phosphate O5'@X.U2581 X.U2579 3.21 166 sugar O2'@X.G2610 X.G2580 3.09 167 phosphate OP2@X.A2592 X.U2590 3.07 168 sugar O4'@X.U2674 X.A2591 3.34 169 sugar O2'@X.U2674 X.A2591 3.28 170 sugar O4'@X.G2601 X.U2598 3.04 171 other O5@X.62B3003 X.U2612 3.36 172 phosphate OP2@X.G2624 X.G2622 3.07 173 sugar O4'@X.C1809 X.U2636 2.94 174 sugar O2'@X.G2570 X.G2672 3.09 175 phosphate OP2@X.G2688 X.G2686 2.80 176 sugar O4'@X.A2028 X.U2716 3.04 177 sugar O4'@X.G2741 X.A2738 3.06 178 phosphate OP1@X.C2742 X.U2739 2.75 179 sugar O4'@X.U2716 X.A2740 3.22 180 sugar O4'@X.U2655 X.A2808 3.01 181 sugar O2'@X.U2655 X.A2808 3.46 182 sugar O4'@X.U2806 X.A2808 2.71 183 sugar O4'@X.A2846 X.G2845 3.48 184 sugar O4'@X.U2852 X.A2854 3.21 185 sugar O4'@X.G2889 X.A2870 3.12 186 phosphate OP2@X.G2879 X.G2877 3.39 187 sugar O2'@X.A2888 X.G2886 3.41 188 sugar O4'@X.G2869 X.A2888 3.26 189 sugar O4'@X.G2906 X.C2905 3.21 190 sugar O4'@Y.A68 Y.A11 3.34 191 phosphate OP2@Y.C41 Y.U38 2.56 192 other OG1@J.THR39 Y.G87 2.88 **************************************************************************** Note: for the various types of loops listed below, numbers within the first set of brackets are the number of loop nts, and numbers in the second set of brackets are the identities of the stems (positive number) or isolated WC/wobble pairs (negative numbers) to which they are linked. **************************************************************************** List of 62 hairpin loops 1 hairpin loop: nts=10; [8]; linked by [#9] summary: [1] 8 [X.59 X.68] 3 nts=10 UUACUAACGA X.U59,X.U60,X.A61,X.C62,X.U63,X.A64,X.A65,X.C66,X.G67,X.A68 nts=8 UACUAACG X.U60,X.A61,X.C62,X.U63,X.A64,X.A65,X.C66,X.G67 2 hairpin loop: nts=8; [6]; linked by [#-2] summary: [1] 6 [X.67 X.74] 1 nts=8 GACGAUAU X.G67,X.A68,X.C69,X.G70,X.A71,X.U72,X.A73,X.U74 nts=6 ACGAUA X.A68,X.C69,X.G70,X.A71,X.U72,X.A73 3 hairpin loop: nts=9; [7]; linked by [#13] summary: [1] 7 [X.87 X.95] 3 nts=9 UGUAAGUAA X.U87,X.G88,X.U89,X.A90,X.A91,X.G92,X.U93,X.A94,X.A95 nts=7 GUAAGUA X.G88,X.U89,X.A90,X.A91,X.G92,X.U93,X.A94 4 hairpin loop: nts=6; [4]; linked by [#14] summary: [1] 4 [X.122 X.127] 3 nts=6 GGAAAC X.G122,X.G123,X.A124,X.A125,X.A126,X.C127 nts=4 GAAA X.G123,X.A124,X.A125,X.A126 5 hairpin loop: nts=8; [6]; linked by [#15] summary: [1] 6 [X.136 X.143] 7 nts=8 AGUUAUGU X.A136,X.G137,X.U138,X.U139,X.A140,X.U141,X.G142,X.U143 nts=6 GUUAUG X.G137,X.U138,X.U139,X.A140,X.U141,X.G142 6 hairpin loop: nts=8; [6]; linked by [#-4] summary: [1] 6 [X.197 X.204] 1 nts=8 GAAACAUC X.G197,X.A198,X.A199,X.A200,X.C201,X.A202,X.U203,X.C204 nts=6 AAACAU X.A198,X.A199,X.A200,X.C201,X.A202,X.U203 7 hairpin loop: nts=6; [4]; linked by [#19] summary: [1] 4 [X.228 X.233] 2 nts=6 AAAAUU X.A228,X.A229,X.A230,X.A231,X.U232,X.U233 nts=4 AAAU X.A229,X.A230,X.A231,X.U232 8 hairpin loop: nts=7; [5]; linked by [#21] summary: [1] 5 [X.249 X.255] 2 nts=7 CGGCGAG X.C249,X.G250,X.G251,X.C252,X.G253,X.A254,X.G255 nts=5 GGCGA X.G250,X.G251,X.C252,X.G253,X.A254 9 hairpin loop: nts=6; [4]; linked by [#24] summary: [1] 4 [X.283 X.288] 2 nts=6 GCUUGC X.G283,X.C284,X.U285,X.U286,X.G287,X.C288 nts=4 CUUG X.C284,X.U285,X.U286,X.G287 10 hairpin loop: nts=8; [6]; linked by [#29] summary: [1] 6 [X.348 X.355] 5 nts=8 CUGGAAAG X.C348,X.U349,X.G350,X.G351,X.A352,X.A353,X.A354,X.G355 nts=6 UGGAAA X.U349,X.G350,X.G351,X.A352,X.A353,X.A354 11 hairpin loop: nts=5; [3]; linked by [#-7] summary: [1] 3 [X.362 X.366] 1 nts=5 CAAAG X.C362,X.A363,X.A364,X.A365,X.G366 nts=3 AAA X.A363,X.A364,X.A365 12 hairpin loop: nts=9; [7]; linked by [#31] summary: [1] 7 [X.370 X.378] 3 nts=9 GUAAUAAUC X.G370,X.U371,X.A372,X.A373,X.U374,X.A375,X.A376,X.U377,X.C378 nts=7 UAAUAAU X.U371,X.A372,X.A373,X.U374,X.A375,X.A376,X.U377 13 hairpin loop: nts=13; [11]; linked by [#32] summary: [1] 11 [X.427 X.439] 7 nts=13 AGCACGUGAAAUU X.A427,X.G428,X.C429,X.A430,X.C431,X.G432,X.U433,X.G434,X.A435,X.A436,X.A437,X.U438,X.U439 nts=11 GCACGUGAAAU X.G428,X.C429,X.A430,X.C431,X.G432,X.U433,X.G434,X.A435,X.A436,X.A437,X.U438 14 hairpin loop: nts=27; [25]; linked by [#-8] summary: [1] 25 [X.431 X.457] 1 nts=27 CGUGAAAUUCCGUCGGAAUCUGGGAGG X.C431,X.G432,X.U433,X.G434,X.A435,X.A436,X.A437,X.U438,X.U439,X.C440,X.C441,X.G442,X.U443,X.C444,X.G445,X.G446,X.A447,X.A448,X.U449,X.C450,X.U451,X.G452,X.G453,X.G454,X.A455,X.G456,X.G457 nts=25 GUGAAAUUCCGUCGGAAUCUGGGAG X.G432,X.U433,X.G434,X.A435,X.A436,X.A437,X.U438,X.U439,X.C440,X.C441,X.G442,X.U443,X.C444,X.G445,X.G446,X.A447,X.A448,X.U449,X.C450,X.U451,X.G452,X.G453,X.G454,X.A455,X.G456 15 hairpin loop: nts=8; [6]; linked by [#33] summary: [1] 6 [X.456 X.463] 5 nts=8 GGACCAUC X.G456,X.G457,X.A458,X.C459,X.C460,X.A461,X.U462,X.C463 nts=6 GACCAU X.G457,X.A458,X.C459,X.C460,X.A461,X.U462 16 hairpin loop: nts=6; [4]; linked by [#35] summary: [1] 4 [X.508 X.513] 2 nts=6 CGUGAG X.C508,X.G509,X.U510,X.G511,X.A512,X.G513 nts=4 GUGA X.G509,X.U510,X.G511,X.A512 17 hairpin loop: nts=6; [4]; linked by [#36] summary: [1] 4 [X.533 X.538] 4 nts=6 CGGAAG X.C533,X.G534,X.G535,X.A536,X.A537,X.G538 nts=4 GGAA X.G534,X.G535,X.A536,X.A537 18 hairpin loop: nts=8; [6]; linked by [#38] summary: [1] 6 [X.587 X.594] 4 nts=8 CGUUAAUG X.C587,X.G588,X.U589,X.U590,X.A591,X.A592,X.U593,X.G594 nts=6 GUUAAU X.G588,X.U589,X.U590,X.A591,X.A592,X.U593 19 hairpin loop: nts=10; [8]; linked by [#-14] summary: [1] 8 [X.609 X.618] 1 nts=10 UUUUGUAGAA X.U609,X.U610,X.U611,X.U612,X.G613,X.U614,X.A615,X.G616,X.A617,X.A618 nts=8 UUUGUAGA X.U610,X.U611,X.U612,X.G613,X.U614,X.A615,X.G616,X.A617 20 hairpin loop: nts=7; [5]; linked by [#43] summary: [1] 5 [X.655 X.661] 3 nts=7 AGUAAAU X.A655,X.G656,X.U657,X.A658,X.A659,X.A660,X.U661 nts=5 GUAAA X.G656,X.U657,X.A658,X.A659,X.A660 21 hairpin loop: nts=6; [4]; linked by [#44] summary: [1] 4 [X.674 X.679] 2 nts=6 CGAAAG X.C674,X.G675,X.A676,X.A677,X.A678,X.G679 nts=4 GAAA X.G675,X.A676,X.A677,X.A678 22 hairpin loop: nts=7; [5]; linked by [#45] summary: [1] 5 [X.686 X.692] 3 nts=7 UGAAUAG X.U686,X.G687,X.A688,X.A689,X.U690,X.A691,X.G692 nts=5 GAAUA X.G687,X.A688,X.A689,X.U690,X.A691 23 hairpin loop: nts=10; [8]; linked by [#52] summary: [1] 8 [X.789 X.798] 5 nts=10 CGUUGAAAAG X.C789,X.G790,X.U791,X.U792,X.G793,X.A794,X.A795,X.A796,X.A797,X.G798 nts=8 GUUGAAAA X.G790,X.U791,X.U792,X.G793,X.A794,X.A795,X.A796,X.A797 24 hairpin loop: nts=7; [5]; linked by [#53] summary: [1] 5 [X.824 X.830] 3 nts=7 AGAAAUU X.A824,X.G825,X.A826,X.A827,X.A828,X.U829,X.U830 nts=5 GAAAU X.G825,X.A826,X.A827,X.A828,X.U829 25 hairpin loop: nts=10; [8]; linked by [#-22] summary: [1] 8 [X.829 X.838] 1 nts=10 UUCCAAUCGA X.U829,X.U830,X.C831,X.C832,X.A833,X.A834,X.U835,X.C836,X.G837,X.A838 nts=8 UCCAAUCG X.U830,X.C831,X.C832,X.A833,X.A834,X.U835,X.C836,X.G837 26 hairpin loop: nts=6; [4]; linked by [#55] summary: [1] 4 [X.871 X.876] 5 nts=6 UUUAGG X.U871,X.U872,X.U873,X.A874,X.G875,X.G876 nts=4 UUAG X.U872,X.U873,X.A874,X.G875 27 hairpin loop: nts=8; [6]; linked by [#62] summary: [1] 6 [X.999 X.1006] 10 nts=8 UGAUAAGG X.U999,X.G1000,X.A1001,X.U1002,X.A1003,X.A1004,X.G1005,X.G1006 nts=6 GAUAAG X.G1000,X.A1001,X.U1002,X.A1003,X.A1004,X.G1005 28 hairpin loop: nts=8; [6]; linked by [#63] summary: [1] 6 [X.1022 X.1029] 3 nts=8 GAAACAGC X.G1022,X.A1023,X.A1024,X.A1025,X.C1026,X.A1027,X.G1028,X.C1029 nts=6 AAACAG X.A1023,X.A1024,X.A1025,X.C1026,X.A1027,X.G1028 29 hairpin loop: nts=6; [4]; linked by [#77] summary: [1] 4 [X.1260 X.1265] 2 nts=6 CGUAAG X.C1260,X.G1261,X.U1262,X.A1263,X.A1264,X.G1265 nts=4 GUAA X.G1261,X.U1262,X.A1263,X.A1264 30 hairpin loop: nts=9; [7]; linked by [#79] summary: [1] 7 [X.1318 X.1326] 6 nts=9 GUGAGAAUC X.G1318,X.U1319,X.G1320,X.A1321,X.G1322,X.A1323,X.A1324,X.U1325,X.C1326 nts=7 UGAGAAU X.U1319,X.G1320,X.A1321,X.G1322,X.A1323,X.A1324,X.U1325 31 hairpin loop: nts=7; [5]; linked by [#84] summary: [1] 5 [X.1361 X.1367] 2 nts=7 GCUCGUC X.G1361,X.C1362,X.U1363,X.C1364,X.G1365,X.U1366,X.C1367 nts=5 CUCGU X.C1362,X.U1363,X.C1364,X.G1365,X.U1366 32 hairpin loop: nts=6; [4]; linked by [#89] summary: [1] 4 [X.1400 X.1405] 3 nts=6 CGACAG X.C1400,X.G1401,X.A1402,X.C1403,X.A1404,X.G1405 nts=4 GACA X.G1401,X.A1402,X.C1403,X.A1404 33 hairpin loop: nts=10; [8]; linked by [#90] summary: [1] 8 [X.1426 X.1435] 5 nts=10 GUUGAUAUUC X.G1426,X.U1427,X.U1428,X.G1429,X.A1430,X.U1431,X.A1432,X.U1433,X.U1434,X.C1435 nts=8 UUGAUAUU X.U1427,X.U1428,X.G1429,X.A1430,X.U1431,X.A1432,X.U1433,X.U1434 34 hairpin loop: nts=4; [2]; linked by [#-37] summary: [1] 2 [X.1612 X.1615] 1 nts=4 CGAG X.C1612,X.G1613,X.A1614,X.G1615 nts=2 GA X.G1613,X.A1614 35 hairpin loop: nts=8; [6]; linked by [#98] summary: [1] 6 [X.1656 X.1663] 2 nts=8 CGACACAG X.C1656,X.G1657,X.A1658,X.C1659,X.A1660,X.C1661,X.A1662,X.G1663 nts=6 GACACA X.G1657,X.A1658,X.C1659,X.A1660,X.C1661,X.A1662 36 hairpin loop: nts=9; [7]; linked by [#99] summary: [1] 7 [X.1673 X.1681] 3 nts=9 AUGAGAAUU X.A1673,X.U1674,X.G1675,X.A1676,X.G1677,X.A1678,X.A1679,X.U1680,X.U1681 nts=7 UGAGAAU X.U1674,X.G1675,X.A1676,X.G1677,X.A1678,X.A1679,X.U1680 37 hairpin loop: nts=6; [4]; linked by [#-40] summary: [1] 4 [X.1735 X.1740] 1 nts=6 CUUCGG X.C1735,X.U1736,X.U1737,X.C1738,X.G1739,X.G1740 nts=4 UUCG X.U1736,X.U1737,X.C1738,X.G1739 38 hairpin loop: nts=6; [4]; linked by [#105] summary: [1] 4 [X.1762 X.1767] 2 nts=6 UUAACG X.U1762,X.U1763,X.A1764,X.A1765,X.C1766,X.G1767 nts=4 UAAC X.U1763,X.A1764,X.A1765,X.C1766 39 hairpin loop: nts=5; [3]; linked by [#-43] summary: [1] 3 [X.1779 X.1783] 1 nts=5 CGCAG X.C1779,X.G1780,X.C1781,X.A1782,X.G1783 nts=3 GCA X.G1780,X.C1781,X.A1782 40 hairpin loop: nts=11; [9]; linked by [#108] summary: [1] 9 [X.1804 X.1814] 2 nts=11 UUUAUCAAAAA X.U1804,X.U1805,X.U1806,X.A1807,X.U1808,X.C1809,X.A1810,X.A1811,X.A1812,X.A1813,X.A1814 nts=9 UUAUCAAAA X.U1805,X.U1806,X.A1807,X.U1808,X.C1809,X.A1810,X.A1811,X.A1812,X.A1813 41 hairpin loop: nts=6; [4]; linked by [#110] summary: [1] 4 [X.1833 X.1838] 3 nts=6 CGUAAG X.C1833,X.G1834,X.U1835,X.A1836,X.A1837,X.G1838 nts=4 GUAA X.G1834,X.U1835,X.A1836,X.A1837 42 hairpin loop: nts=9; [7]; linked by [#118] summary: [1] 7 [X.1976 X.1984] 5 nts=9 GGUAAGUUC X.G1976,X.G1977,X.U1978,X.A1979,X.A1980,X.G1981,X.U1982,X.U1983,X.C1984 nts=7 GUAAGUU X.G1977,X.U1978,X.A1979,X.A1980,X.G1981,X.U1982,X.U1983 43 hairpin loop: nts=15; [13]; linked by [#-47] summary: [1] 13 [X.2047 X.2061] 1 nts=15 AGUACCUGUGAAGAU X.A2047,X.G2048,X.U2049,X.A2050,X.C2051,X.C2052,X.U2053,X.G2054,X.U2055,X.G2056,X.A2057,X.A2058,X.G2059,X.A2060,X.U2061 nts=13 GUACCUGUGAAGA X.G2048,X.U2049,X.A2050,X.C2051,X.C2052,X.U2053,X.G2054,X.U2055,X.G2056,X.A2057,X.A2058,X.G2059,X.A2060 44 hairpin loop: nts=10; [8]; linked by [#119] summary: [1] 8 [X.2054 X.2063] 5 nts=10 GUGAAGAUGC X.G2054,X.U2055,X.G2056,X.A2057,X.A2058,X.G2059,X.A2060,X.U2061,X.G2062,X.C2063 nts=8 UGAAGAUG X.U2055,X.G2056,X.A2057,X.A2058,X.G2059,X.A2060,X.U2061,X.G2062 45 hairpin loop: nts=7; [5]; linked by [#131] summary: [1] 5 [X.2236 X.2242] 5 nts=7 CUUAUCG X.C2236,X.U2237,X.U2238,X.A2239,X.U2240,X.C2241,X.G2242 nts=5 UUAUC X.U2237,X.U2238,X.A2239,X.U2240,X.C2241 46 hairpin loop: nts=9; [7]; linked by [#132] summary: [1] 7 [X.2275 X.2283] 3 nts=9 CUGGGGCGG X.C2275,X.U2276,X.G2277,X.G2278,X.G2279,X.G2280,X.C2281,X.G2282,X.G2283 nts=7 UGGGGCG X.U2276,X.G2277,X.G2278,X.G2279,X.G2280,X.C2281,X.G2282 47 hairpin loop: nts=21; [19]; linked by [#-49] summary: [1] 19 [X.2282 X.2302] 1 nts=21 GGUCGCCUCCUAAAAGGUAAC X.G2282,X.G2283,X.U2284,X.C2285,X.G2286,X.C2287,X.C2288,X.U2289,X.C2290,X.C2291,X.U2292,X.A2293,X.A2294,X.A2295,X.A2296,X.G2297,X.G2298,X.U2299,X.A2300,X.A2301,X.C2302 nts=19 GUCGCCUCCUAAAAGGUAA X.G2283,X.U2284,X.C2285,X.G2286,X.C2287,X.C2288,X.U2289,X.C2290,X.C2291,X.U2292,X.A2293,X.A2294,X.A2295,X.A2296,X.G2297,X.G2298,X.U2299,X.A2300,X.A2301 48 hairpin loop: nts=13; [11]; linked by [#133] summary: [1] 11 [X.2291 X.2303] 6 nts=13 CUAAAAGGUAACG X.C2291,X.U2292,X.A2293,X.A2294,X.A2295,X.A2296,X.G2297,X.G2298,X.U2299,X.A2300,X.A2301,X.C2302,X.G2303 nts=11 UAAAAGGUAAC X.U2292,X.A2293,X.A2294,X.A2295,X.A2296,X.G2297,X.G2298,X.U2299,X.A2300,X.A2301,X.C2302 49 hairpin loop: nts=8; [6]; linked by [#137] summary: [1] 6 [X.2351 X.2358] 2 nts=8 UGUAAAGG X.U2351,X.G2352,X.U2353,X.A2354,X.A2355,X.A2356,X.G2357,X.G2358 nts=6 GUAAAG X.G2352,X.U2353,X.A2354,X.A2355,X.A2356,X.G2357 50 hairpin loop: nts=8; [6]; linked by [#140] summary: [1] 6 [X.2382 X.2389] 3 nts=8 CCUACAAG X.C2382,X.C2383,X.U2384,X.A2385,X.C2386,X.A2387,X.A2388,X.G2389 nts=6 CUACAA X.C2383,X.U2384,X.A2385,X.C2386,X.A2387,X.A2388 51 hairpin loop: nts=6; [4]; linked by [#141] summary: [1] 4 [X.2401 X.2406] 3 nts=6 CGAAAG X.C2401,X.G2402,X.A2403,X.A2404,X.A2405,X.G2406 nts=4 GAAA X.G2402,X.A2403,X.A2404,X.A2405 52 hairpin loop: nts=10; [8]; linked by [#143] summary: [1] 8 [X.2431 X.2440] 2 nts=10 CGCAUGGAAG X.C2431,X.G2432,X.C2433,X.A2434,X.U2435,X.G2436,X.G2437,X.A2438,X.A2439,X.G2440 nts=8 GCAUGGAA X.G2432,X.C2433,X.A2434,X.U2435,X.G2436,X.G2437,X.A2438,X.A2439 53 hairpin loop: nts=9; [7]; linked by [#146] summary: [1] 7 [X.2498 X.2506] 2 nts=9 AGUUCACAU X.A2498,X.G2499,X.U2500,X.U2501,X.C2502,X.A2503,X.C2504,X.A2505,X.U2506 nts=7 GUUCACA X.G2499,X.U2500,X.U2501,X.C2502,X.A2503,X.C2504,X.A2505 54 hairpin loop: nts=8; [6]; linked by [#150] summary: [1] 6 [X.2555 X.2562] 6 nts=8 UGUAGUCG X.U2555,X.G2556,X.U2557,X.A2558,X.G2559,X.U2560,X.C2561,X.G2562 nts=6 GUAGUC X.G2556,X.U2557,X.A2558,X.G2559,X.U2560,X.C2561 55 hairpin loop: nts=7; [5]; linked by [#151] summary: [1] 5 [X.2578 X.2584] 5 nts=7 CUGUUCG X.C2578,X.U2579,X.G2580,X.U2581,X.U2582,X.C2583,X.G2584 nts=5 UGUUC X.U2579,X.G2580,X.U2581,X.U2582,X.C2583 56 hairpin loop: nts=6; [4]; linked by [#153] summary: [1] 4 [X.2621 X.2626] 3 nts=6 CGUGAG X.C2621,X.G2622,X.U2623,X.G2624,X.A2625,X.G2626 nts=4 GUGA X.G2622,X.U2623,X.G2624,X.A2625 57 hairpin loop: nts=6; [4]; linked by [#-61] summary: [1] 4 [X.2685 X.2690] 1 nts=6 CGAGAG X.C2685,X.G2686,X.A2687,X.G2688,X.A2689,X.G2690 nts=4 GAGA X.G2686,X.A2687,X.G2688,X.A2689 58 hairpin loop: nts=6; [4]; linked by [#160] summary: [1] 4 [X.2728 X.2733] 6 nts=6 UGCCAA X.U2728,X.G2729,X.C2730,X.C2731,X.A2732,X.A2733 nts=4 GCCA X.G2729,X.C2730,X.C2731,X.A2732 59 hairpin loop: nts=15; [13]; linked by [#162] summary: [1] 13 [X.2772 X.2786] 4 nts=15 CUGAAAGCAUCUAAG X.C2772,X.U2773,X.G2774,X.A2775,X.A2776,X.A2777,X.G2778,X.C2779,X.A2780,X.U2781,X.C2782,X.U2783,X.A2784,X.A2785,X.G2786 nts=13 UGAAAGCAUCUAA X.U2773,X.G2774,X.A2775,X.A2776,X.A2777,X.G2778,X.C2779,X.A2780,X.U2781,X.C2782,X.U2783,X.A2784,X.A2785 60 hairpin loop: nts=9; [7]; linked by [#165] summary: [1] 7 [X.2839 X.2847] 5 nts=9 AAAGAUGAU X.A2839,X.A2840,X.A2841,X.G2842,X.A2843,X.U2844,X.G2845,X.A2846,X.U2847 nts=7 AAGAUGA X.A2840,X.A2841,X.G2842,X.A2843,X.U2844,X.G2845,X.A2846 61 hairpin loop: nts=6; [4]; linked by [#169] summary: [1] 4 [X.2876 X.2881] 5 nts=6 GGUGAC X.G2876,X.G2877,X.U2878,X.G2879,X.A2880,X.C2881 nts=4 GUGA X.G2877,X.U2878,X.G2879,X.A2880 62 hairpin loop: nts=7; [5]; linked by [#-66] summary: [1] 5 [Y.36 Y.42] 1 nts=7 CAUGCCG Y.C36,Y.A37,Y.U38,Y.G39,Y.C40,Y.C41,Y.G42 nts=5 AUGCC Y.A37,Y.U38,Y.G39,Y.C40,Y.C41 **************************************************************************** List of 35 bulges 1 bulge: nts=5; [0,1]; linked by [#4,#5] summary: [2] 0 1 [X.36 X.490 X.37 X.488] 2 6 nts=5 GCGAC X.G36,X.C37,X.G488,X.A489,X.C490 nts=0 nts=1 A X.A489 2 bulge: nts=5; [0,1]; linked by [#16,#17] summary: [2] 0 1 [X.152 X.177 X.153 X.175] 2 5 nts=5 CGCAG X.C152,X.G153,X.C175,X.A176,X.G177 nts=0 nts=1 A X.A176 3 bulge: nts=5; [0,1]; linked by [#-3,#18] summary: [2] 0 1 [X.186 X.217 X.187 X.215] 1 4 nts=5 CCGAG X.C186,X.C187,X.G215,X.A216,X.G217 nts=0 nts=1 A X.A216 4 bulge: nts=5; [0,1]; linked by [#48,#-17] summary: [2] 0 1 [X.742 X.810 X.743 X.808] 9 1 nts=5 UCGAA X.U742,X.C743,X.G808,X.A809,X.A810 nts=0 nts=1 A X.A809 5 bulge: nts=5; [0,1]; linked by [#49,#-18] summary: [2] 0 1 [X.747 X.775 X.748 X.773] 3 1 nts=5 UUGGA X.U747,X.U748,X.G773,X.G774,X.A775 nts=0 nts=1 G X.G774 6 bulge: nts=5; [1,0]; linked by [#51,#52] summary: [2] 1 0 [X.783 X.803 X.785 X.802] 3 5 nts=5 GACGC X.G783,X.A784,X.C785,X.G802,X.C803 nts=1 A X.A784 nts=0 7 bulge: nts=5; [0,1]; linked by [#56,#57] summary: [2] 0 1 [X.882 X.986 X.883 X.984] 2 7 nts=5 CCGAG X.C882,X.C883,X.G984,X.A985,X.G986 nts=0 nts=1 A X.A985 8 bulge: nts=5; [0,1]; linked by [#58,#59] summary: [2] 0 1 [X.897 X.971 X.898 X.969] 5 4 nts=5 AUAUU X.A897,X.U898,X.A969,X.U970,X.U971 nts=0 nts=1 U X.U970 9 bulge: nts=5; [0,1]; linked by [#-23,#60] summary: [2] 0 1 [X.907 X.960 X.908 X.958] 1 2 nts=5 GAUCC X.G907,X.A908,X.U958,X.C959,X.C960 nts=0 nts=1 C X.C959 10 bulge: nts=5; [1,0]; linked by [#64,#65] summary: [2] 1 0 [X.1038 X.1204 X.1040 X.1203] 4 3 nts=5 CCAUG X.C1038,X.C1039,X.A1040,X.U1203,X.G1204 nts=1 C X.C1039 nts=0 11 bulge: nts=5; [1,0]; linked by [#-25,#68] summary: [2] 1 0 [X.1055 X.1194 X.1057 X.1193] 1 6 nts=5 AUAUU X.A1055,X.U1056,X.A1057,X.U1193,X.U1194 nts=1 U X.U1056 nts=0 12 bulge: nts=5; [1,0]; linked by [#87,#-32] summary: [2] 1 0 [X.1388 X.1417 X.1390 X.1416] 2 1 nts=5 CUAUG X.C1388,X.U1389,X.A1390,X.U1416,X.G1417 nts=1 U X.U1389 nts=0 13 bulge: nts=5; [1,0]; linked by [#104,#-42] summary: [2] 1 0 [X.1755 X.1774 X.1757 X.1773] 5 1 nts=5 UUUAA X.U1755,X.U1756,X.U1757,X.A1773,X.A1774 nts=1 U X.U1756 nts=0 14 bulge: nts=5; [0,1]; linked by [#106,#107] summary: [2] 0 1 [X.1797 X.2009 X.1798 X.2007] 7 2 nts=5 GCGAU X.G1797,X.C1798,X.G2007,X.A2008,X.U2009 nts=0 nts=1 A X.A2008 15 bulge: nts=5; [1,0]; linked by [#120,#121] summary: [2] 1 0 [X.2077 X.2645 X.2079 X.2644] 8 3 nts=5 CAGCG X.C2077,X.A2078,X.G2079,X.C2644,X.G2645 nts=1 A X.A2078 nts=0 16 bulge: nts=5; [1,0]; linked by [#123,#124] summary: [2] 1 0 [X.2094 X.2470 X.2096 X.2469] 4 2 nts=5 GUGCC X.G2094,X.U2095,X.G2096,X.C2469,X.C2470 nts=1 U X.U2095 nts=0 17 bulge: nts=5; [1,0]; linked by [#142,#143] summary: [2] 1 0 [X.2428 X.2442 X.2430 X.2441] 7 2 nts=5 UUCGG X.U2428,X.U2429,X.C2430,X.G2441,X.G2442 nts=1 U X.U2429 nts=0 18 bulge: nts=5; [0,1]; linked by [#-55,#-56] summary: [2] 0 1 [X.2480 X.2527 X.2481 X.2525] 1 1 nts=5 AGCCU X.A2480,X.G2481,X.C2525,X.C2526,X.U2527 nts=0 nts=1 C X.C2526 19 bulge: nts=5; [0,1]; linked by [#-56,#144] summary: [2] 0 1 [X.2481 X.2525 X.2482 X.2523] 1 3 nts=5 GGCAC X.G2481,X.G2482,X.C2523,X.A2524,X.C2525 nts=0 nts=1 A X.A2524 20 bulge: nts=5; [1,0]; linked by [#144,#-57] summary: [2] 1 0 [X.2484 X.2521 X.2486 X.2520] 3 1 nts=5 UUAUG X.U2484,X.U2485,X.A2486,X.U2520,X.G2521 nts=1 U X.U2485 nts=0 21 bulge: nts=5; [0,1]; linked by [#-58,#147] summary: [2] 0 1 [X.2534 X.2609 X.2535 X.2607] 1 3 nts=5 CGUGG X.C2534,X.G2535,X.U2607,X.G2608,X.G2609 nts=0 nts=1 G X.G2608 22 bulge: nts=5; [0,1]; linked by [#152,#153] summary: [2] 0 1 [X.2618 X.2630 X.2619 X.2628] 4 3 nts=5 CGCAG X.C2618,X.G2619,X.C2628,X.A2629,X.G2630 nts=0 nts=1 A X.A2629 23 bulge: nts=5; [0,1]; linked by [#166,#167] summary: [2] 0 1 [X.2858 X.2900 X.2859 X.2898] 3 5 nts=5 GGUAC X.G2858,X.G2859,X.U2898,X.A2899,X.C2900 nts=0 nts=1 A X.A2899 24 bulge: nts=5; [0,1]; linked by [#170,#171] summary: [2] 0 1 [Y.15 Y.65 Y.16 Y.63] 2 2 nts=5 CAUAG Y.C15,Y.A16,Y.U63,Y.A64,Y.G65 nts=0 nts=1 A Y.A64 25 bulge: nts=6; [0,2]; linked by [#25,#26] summary: [2] 0 2 [X.305 X.412 X.306 X.409] 3 5 nts=6 ACGGAU X.A305,X.C306,X.G409,X.G410,X.A411,X.U412 nts=0 nts=2 GA X.G410,X.A411 26 bulge: nts=6; [2,0]; linked by [#82,#-31] summary: [2] 2 0 [X.1347 X.1648 X.1350 X.1647] 2 1 nts=6 GUUUAC X.G1347,X.U1348,X.U1349,X.U1350,X.A1647,X.C1648 nts=2 UU X.U1348,X.U1349 nts=0 27 bulge: nts=6; [2,0]; linked by [#102,#-38] summary: [2] 2 0 [X.1710 X.2021 X.1713 X.2020] 2 1 nts=6 GGAAUC X.G1710,X.G1711,X.A1712,X.A1713,X.U2020,X.C2021 nts=2 GA X.G1711,X.A1712 nts=0 28 bulge: nts=6; [0,2]; linked by [#113,#114] summary: [2] 0 2 [X.1868 X.1928 X.1869 X.1925] 2 5 nts=6 UGUAAA X.U1868,X.G1869,X.U1925,X.A1926,X.A1927,X.A1928 nts=0 nts=2 AA X.A1926,X.A1927 29 bulge: nts=6; [2,0]; linked by [#114,#115] summary: [2] 2 0 [X.1873 X.1921 X.1876 X.1920] 5 3 nts=6 GAAGCC X.G1873,X.A1874,X.A1875,X.G1876,X.C1920,X.C1921 nts=2 AA X.A1874,X.A1875 nts=0 30 bulge: nts=6; [0,2]; linked by [#-45,#-46] summary: [2] 0 2 [X.1960 X.1994 X.1961 X.1991] 1 1 nts=6 GCGCAC X.G1960,X.C1961,X.G1991,X.C1992,X.A1993,X.C1994 nts=0 nts=2 CA X.C1992,X.A1993 31 bulge: nts=6; [0,2]; linked by [#124,#125] summary: [2] 0 2 [X.2097 X.2468 X.2098 X.2465] 2 4 nts=6 GAUACC X.G2097,X.A2098,X.U2465,X.A2466,X.C2467,X.C2468 nts=0 nts=2 AC X.A2466,X.C2467 32 bulge: nts=6; [0,2]; linked by [#-59,#148] summary: [2] 0 2 [X.2539 X.2601 X.2540 X.2598] 1 5 nts=6 CAUACG X.C2539,X.A2540,X.U2598,X.A2599,X.C2600,X.G2601 nts=0 nts=2 AC X.A2599,X.C2600 33 bulge: nts=6; [0,2]; linked by [#149,#150] summary: [2] 0 2 [X.2549 X.2570 X.2550 X.2567] 3 6 nts=6 UGCAAG X.U2549,X.G2550,X.C2567,X.A2568,X.A2569,X.G2570 nts=0 nts=2 AA X.A2568,X.A2569 34 bulge: nts=6; [0,2]; linked by [#159,#160] summary: [2] 0 2 [X.2722 X.2741 X.2723 X.2738] 5 6 nts=6 UUAUAG X.U2722,X.U2723,X.A2738,X.U2739,X.A2740,X.G2741 nts=0 nts=2 UA X.U2739,X.A2740 35 bulge: nts=6; [0,2]; linked by [#173,#174] summary: [2] 0 2 [Y.28 Y.52 Y.29 Y.49] 2 4 nts=6 CCGAAG Y.C28,Y.C29,Y.G49,Y.A50,Y.A51,Y.G52 nts=0 nts=2 AA Y.A50,Y.A51 **************************************************************************** List of 73 internal loops 1 symmetric internal loop: nts=6; [1,1]; linked by [#23,#24] summary: [2] 1 1 [X.280 X.291 X.282 X.289] 5 2 nts=6 CAAUUG X.C280,X.A281,X.A282,X.U289,X.U290,X.G291 nts=1 A X.A281 nts=1 U X.U290 2 symmetric internal loop: nts=6; [1,1]; linked by [#-13,#-14] summary: [2] 1 1 [X.607 X.620 X.609 X.618] 1 1 nts=6 CCUAUG X.C607,X.C608,X.U609,X.A618,X.U619,X.G620 nts=1 C X.C608 nts=1 U X.U619 3 symmetric internal loop: nts=6; [1,1]; linked by [#40,#41] summary: [2] 1 1 [X.638 X.707 X.640 X.705] 7 5 nts=6 UUGUUG X.U638,X.U639,X.G640,X.U705,X.U706,X.G707 nts=1 U X.U639 nts=1 U X.U706 4 symmetric internal loop: nts=6; [1,1]; linked by [#46,#-16] summary: [2] 1 1 [X.717 X.853 X.719 X.851] 2 1 nts=6 CCGCUG X.C717,X.C718,X.G719,X.C851,X.U852,X.G853 nts=1 C X.C718 nts=1 U X.U852 5 symmetric internal loop: nts=6; [1,1]; linked by [#70,#71] summary: [2] 1 1 [X.1081 X.1162 X.1083 X.1160] 4 5 nts=6 GCGCAC X.G1081,X.C1082,X.G1083,X.C1160,X.A1161,X.C1162 nts=1 C X.C1082 nts=1 A X.A1161 6 symmetric internal loop: nts=6; [1,1]; linked by [#74,#75] summary: [2] 1 1 [X.1243 X.1279 X.1245 X.1277] 7 2 nts=6 GGGCGC X.G1243,X.G1244,X.G1245,X.C1277,X.G1278,X.C1279 nts=1 G X.G1244 nts=1 G X.G1278 7 symmetric internal loop: nts=6; [1,1]; linked by [#76,#77] summary: [2] 1 1 [X.1257 X.1268 X.1259 X.1266] 5 2 nts=6 GAUGAC X.G1257,X.A1258,X.U1259,X.G1266,X.A1267,X.C1268 nts=1 A X.A1258 nts=1 A X.A1267 8 symmetric internal loop: nts=6; [1,1]; linked by [#-35,#-36] summary: [2] 1 1 [X.1528 X.1547 X.1530 X.1545] 1 1 nts=6 GUAUAC X.G1528,X.U1529,X.A1530,X.U1545,X.A1546,X.C1547 nts=1 U X.U1529 nts=1 A X.A1546 9 symmetric internal loop: nts=6; [1,1]; linked by [#101,#102] summary: [2] 1 1 [X.1707 X.2024 X.1709 X.2022] 8 2 nts=6 UAAUCA X.U1707,X.A1708,X.A1709,X.U2022,X.C2023,X.A2024 nts=1 A X.A1708 nts=1 C X.C2023 10 symmetric internal loop: nts=6; [1,1]; linked by [#127,#128] summary: [2] 1 1 [X.2111 X.2262 X.2113 X.2260] 2 6 nts=6 CCUAAG X.C2111,X.C2112,X.U2113,X.A2260,X.A2261,X.G2262 nts=1 C X.C2112 nts=1 A X.A2261 11 symmetric internal loop: nts=6; [1,1]; linked by [#-53,#138] summary: [2] 1 1 [X.2353 X.2416 X.2355 X.2414] 1 3 nts=6 UAAUAG X.U2353,X.A2354,X.A2355,X.U2414,X.A2415,X.G2416 nts=1 A X.A2354 nts=1 A X.A2415 12 symmetric internal loop: nts=6; [1,1]; linked by [#171,#172] summary: [2] 1 1 [Y.17 Y.62 Y.19 Y.60] 2 2 nts=6 AGGCUU Y.A17,Y.G18,Y.G19,Y.C60,Y.U61,Y.U62 nts=1 G Y.G18 nts=1 U Y.U61 13 asymmetric internal loop: nts=7; [1,2]; linked by [#5,#6] summary: [2] 1 2 [X.42 X.483 X.44 X.480] 6 2 nts=7 GAAUCUC X.G42,X.A43,X.A44,X.U480,X.C481,X.U482,X.C483 nts=1 A X.A43 nts=2 CU X.C481,X.U482 14 asymmetric internal loop: nts=7; [2,1]; linked by [#69,#70] summary: [2] 2 1 [X.1075 X.1167 X.1078 X.1165] 2 4 nts=7 GAUGCGC X.G1075,X.A1076,X.U1077,X.G1078,X.C1165,X.G1166,X.C1167 nts=2 AU X.A1076,X.U1077 nts=1 G X.G1166 15 asymmetric internal loop: nts=7; [1,2]; linked by [#-29,#74] summary: [2] 1 2 [X.1235 X.1288 X.1237 X.1285] 1 7 nts=7 CGUAGUG X.C1235,X.G1236,X.U1237,X.A1285,X.G1286,X.U1287,X.G1288 nts=1 G X.G1236 nts=2 GU X.G1286,X.U1287 16 asymmetric internal loop: nts=7; [1,2]; linked by [#-32,#88] summary: [2] 1 2 [X.1390 X.1416 X.1392 X.1413] 1 3 k-turn:undecided nts=7 AAGCGAU X.A1390,X.A1391,X.G1392,X.C1413,X.G1414,X.A1415,X.U1416 nts=1 A X.A1391 nts=2 GA X.G1414,X.A1415 17 asymmetric internal loop: nts=7; [1,2]; linked by [#121,#122] summary: [2] 1 2 [X.2081 X.2642 X.2083 X.2639] 3 2 nts=7 ACGCUAU X.A2081,X.C2082,X.G2083,X.C2639,X.U2640,X.A2641,X.U2642 nts=1 C X.C2082 nts=2 UA X.U2640,X.A2641 18 asymmetric internal loop: nts=7; [1,2]; linked by [#126,#127] summary: [2] 1 2 [X.2108 X.2266 X.2110 X.2263] 5 2 nts=7 UAGCGGG X.U2108,X.A2109,X.G2110,X.C2263,X.G2264,X.G2265,X.G2266 nts=1 A X.A2109 nts=2 GG X.G2264,X.G2265 19 asymmetric internal loop: nts=7; [2,1]; linked by [#130,#131] summary: [2] 2 1 [X.2229 X.2248 X.2232 X.2246] 2 5 nts=7 CGCAUGG X.C2229,X.G2230,X.C2231,X.A2232,X.U2246,X.G2247,X.G2248 nts=2 GC X.G2230,X.C2231 nts=1 G X.G2247 20 asymmetric internal loop: nts=7; [1,2]; linked by [#167,#168] summary: [2] 1 2 [X.2863 X.2894 X.2865 X.2891] 5 3 nts=7 GAGUGAC X.G2863,X.A2864,X.G2865,X.U2891,X.G2892,X.A2893,X.C2894 nts=1 A X.A2864 nts=2 GA X.G2892,X.A2893 21 symmetric internal loop: nts=8; [2,2]; linked by [#10,#11] summary: [2] 2 2 [X.62 X.92 X.65 X.89] 2 2 nts=8 CUAAUAAG X.C62,X.U63,X.A64,X.A65,X.U89,X.A90,X.A91,X.G92 nts=2 UA X.U63,X.A64 nts=2 AA X.A90,X.A91 22 asymmetric internal loop: nts=8; [1,3]; linked by [#27,#28] summary: [2] 1 3 [X.336 X.390 X.338 X.386] 6 3 nts=8 UAGCGAAA X.U336,X.A337,X.G338,X.C386,X.G387,X.A388,X.A389,X.A390 nts=1 A X.A337 nts=3 GAA X.G387,X.A388,X.A389 23 symmetric internal loop: nts=8; [2,2]; linked by [#37,#38] summary: [2] 2 2 [X.581 X.600 X.584 X.597] 4 4 nts=8 AGAGUGAU X.A581,X.G582,X.A583,X.G584,X.U597,X.G598,X.A599,X.U600 nts=2 GA X.G582,X.A583 nts=2 GA X.G598,X.A599 24 asymmetric internal loop: nts=8; [1,3]; linked by [#-21,#53] summary: [2] 1 3 [X.820 X.836 X.822 X.832] 1 3 nts=8 GCGCAAUC X.G820,X.C821,X.G822,X.C832,X.A833,X.A834,X.U835,X.C836 nts=1 C X.C821 nts=3 AAU X.A833,X.A834,X.U835 25 symmetric internal loop: nts=8; [2,2]; linked by [#72,#-28] summary: [2] 2 2 [X.1096 X.1151 X.1099 X.1148] 2 1 nts=8 CUAGCUAG X.C1096,X.U1097,X.A1098,X.G1099,X.C1148,X.U1149,X.A1150,X.G1151 nts=2 UA X.U1097,X.A1098 nts=2 UA X.U1149,X.A1150 26 asymmetric internal loop: nts=8; [3,1]; linked by [#83,#84] summary: [2] 3 1 [X.1356 X.1370 X.1360 X.1368] 6 2 nts=8 GGAAGCGC X.G1356,X.G1357,X.A1358,X.A1359,X.G1360,X.C1368,X.G1369,X.C1370 nts=3 GAA X.G1357,X.A1358,X.A1359 nts=1 G X.G1369 27 symmetric internal loop: nts=8; [2,2]; linked by [#129,#-48] summary: [2] 2 2 [X.2123 X.2220 X.2126 X.2217] 4 1 nts=8 AUUCGGCU X.A2123,X.U2124,X.U2125,X.C2126,X.G2217,X.G2218,X.C2219,X.U2220 nts=2 UU X.U2124,X.U2125 nts=2 GC X.G2218,X.C2219 28 asymmetric internal loop: nts=8; [1,3]; linked by [#-52,#136] summary: [2] 1 3 [X.2324 X.2348 X.2326 X.2344] 1 5 nts=8 CAGCAUAG X.C2324,X.A2325,X.G2326,X.C2344,X.A2345,X.U2346,X.A2347,X.G2348 nts=1 A X.A2325 nts=3 AUA X.A2345,X.U2346,X.A2347 29 symmetric internal loop: nts=8; [2,2]; linked by [#139,#140] summary: [2] 2 2 [X.2377 X.2394 X.2380 X.2391] 4 3 nts=8 CGAGCGAG X.C2377,X.G2378,X.A2379,X.G2380,X.C2391,X.G2392,X.A2393,X.G2394 nts=2 GA X.G2378,X.A2379 nts=2 GA X.G2392,X.A2393 30 asymmetric internal loop: nts=8; [1,3]; linked by [#-57,#145] summary: [2] 1 3 [X.2486 X.2520 X.2488 X.2516] 1 6 nts=8 AUCGGUUU X.A2486,X.U2487,X.C2488,X.G2516,X.G2517,X.U2518,X.U2519,X.U2520 nts=1 U X.U2487 nts=3 GUU X.G2517,X.U2518,X.U2519 31 asymmetric internal loop: nts=8; [1,3]; linked by [#147,#-59] summary: [2] 1 3 [X.2537 X.2605 X.2539 X.2601] 3 1 nts=8 CUCGCGAG X.C2537,X.U2538,X.C2539,X.G2601,X.C2602,X.G2603,X.A2604,X.G2605 nts=1 U X.U2538 nts=3 CGA X.C2602,X.G2603,X.A2604 32 asymmetric internal loop: nts=8; [3,1]; linked by [#157,#158] summary: [2] 3 1 [X.2707 X.2754 X.2711 X.2752] 5 4 nts=8 CCUCUAUG X.C2707,X.C2708,X.U2709,X.C2710,X.U2711,X.A2752,X.U2753,X.G2754 nts=3 CUC X.C2708,X.U2709,X.C2710 nts=1 U X.U2753 33 symmetric internal loop: nts=8; [2,2]; linked by [#-63,#-64] summary: [2] 2 2 [Y.2 Y.113 Y.5 Y.110] 1 1 nts=8 CUGGCAGG Y.C2,Y.U3,Y.G4,Y.G5,Y.C110,Y.A111,Y.G112,Y.G113 nts=2 UG Y.U3,Y.G4 nts=2 AG Y.A111,Y.G112 34 symmetric internal loop: nts=8; [2,2]; linked by [#-64,#-65] summary: [2] 2 2 [Y.5 Y.110 Y.8 Y.107] 1 1 nts=8 GUGAUGCC Y.G5,Y.U6,Y.G7,Y.A8,Y.U107,Y.G108,Y.C109,Y.C110 nts=2 UG Y.U6,Y.G7 nts=2 GC Y.G108,Y.C109 35 asymmetric internal loop: nts=9; [3,2]; linked by [#57,#58] summary: [2] 3 2 [X.889 X.978 X.893 X.975] 7 5 nts=9 UGAUGUUAA X.U889,X.G890,X.A891,X.U892,X.G893,X.U975,X.U976,X.A977,X.A978 nts=3 GAU X.G890,X.A891,X.U892 nts=2 UA X.U976,X.A977 36 asymmetric internal loop: nts=9; [3,2]; linked by [#60,#61] summary: [2] 3 2 [X.909 X.957 X.913 X.954] 2 8 nts=9 GCACUAAAC X.G909,X.C910,X.A911,X.C912,X.U913,X.A954,X.A955,X.A956,X.C957 nts=3 CAC X.C910,X.A911,X.C912 nts=2 AA X.A955,X.A956 37 asymmetric internal loop: nts=9; [3,2]; linked by [#92,#93] summary: [2] 3 2 [X.1461 X.1627 X.1465 X.1624] 2 4 nts=9 CGAUGCUAG X.C1461,X.G1462,X.A1463,X.U1464,X.G1465,X.C1624,X.U1625,X.A1626,X.G1627 nts=3 GAU X.G1462,X.A1463,X.U1464 nts=2 UA X.U1625,X.A1626 38 asymmetric internal loop: nts=9; [4,1]; linked by [#100,#101] summary: [2] 4 1 [X.1695 X.2033 X.1700 X.2031] 4 8 nts=9 GCGAACGAC X.G1695,X.C1696,X.G1697,X.A1698,X.A1699,X.C1700,X.G2031,X.A2032,X.C2033 nts=4 CGAA X.C1696,X.G1697,X.A1698,X.A1699 nts=1 A X.A2032 39 symmetric internal loop: nts=10; [3,3]; linked by [#42,#43] summary: [2] 3 3 [X.649 X.667 X.653 X.663] 3 3 nts=10 UUAAGUGGAG X.U649,X.U650,X.A651,X.A652,X.G653,X.U663,X.G664,X.G665,X.A666,X.G667 nts=3 UAA X.U650,X.A651,X.A652 nts=3 GGA X.G664,X.G665,X.A666 40 symmetric internal loop: nts=10; [3,3]; linked by [#-18,#50] summary: [2] 3 3 [X.748 X.773 X.752 X.769] 1 5 nts=10 UGAAGUGGAG X.U748,X.G749,X.A750,X.A751,X.G752,X.U769,X.G770,X.G771,X.A772,X.G773 nts=3 GAA X.G749,X.A750,X.A751 nts=3 GGA X.G770,X.G771,X.A772 41 symmetric internal loop: nts=10; [3,3]; linked by [#65,#66] summary: [2] 3 3 [X.1042 X.1201 X.1046 X.1197] 3 3 nts=10 CUAAGCGAAG X.C1042,X.U1043,X.A1044,X.A1045,X.G1046,X.C1197,X.G1198,X.A1199,X.A1200,X.G1201 nts=3 UAA X.U1043,X.A1044,X.A1045 nts=3 GAA X.G1198,X.A1199,X.A1200 42 symmetric internal loop: nts=10; [3,3]; linked by [#88,#89] summary: [2] 3 3 [X.1394 X.1411 X.1398 X.1407] 3 3 nts=10 UGAGGCGUAG X.U1394,X.G1395,X.A1396,X.G1397,X.G1398,X.C1407,X.G1408,X.U1409,X.A1410,X.G1411 nts=3 GAG X.G1395,X.A1396,X.G1397 nts=3 GUA X.G1408,X.U1409,X.A1410 43 symmetric internal loop: nts=10; [3,3]; linked by [#94,#95] summary: [2] 3 3 [X.1476 X.1608 X.1480 X.1604] 4 2 nts=10 GUAGGCACAC X.G1476,X.U1477,X.A1478,X.G1479,X.G1480,X.C1604,X.A1605,X.C1606,X.A1607,X.C1608 nts=3 UAG X.U1477,X.A1478,X.G1479 nts=3 ACA X.A1605,X.C1606,X.A1607 44 asymmetric internal loop: nts=10; [4,2]; linked by [#-38,#-39] summary: [2] 4 2 [X.1713 X.2020 X.1718 X.2017] 1 1 nts=10 ACUCGGCUGU X.A1713,X.C1714,X.U1715,X.C1716,X.G1717,X.G1718,X.C2017,X.U2018,X.G2019,X.U2020 nts=4 CUCG X.C1714,X.U1715,X.C1716,X.G1717 nts=2 UG X.U2018,X.G2019 45 symmetric internal loop: nts=10; [3,3]; linked by [#115,#116] summary: [2] 3 3 [X.1878 X.1918 X.1882 X.1914] 3 2 nts=10 UUAAGCGAAG X.U1878,X.U1879,X.A1880,X.A1881,X.G1882,X.C1914,X.G1915,X.A1916,X.A1917,X.G1918 nts=3 UAA X.U1879,X.A1880,X.A1881 nts=3 GAA X.G1915,X.A1916,X.A1917 46 symmetric internal loop: nts=10; [3,3]; linked by [#145,#146] summary: [2] 3 3 [X.2493 X.2511 X.2497 X.2507] 6 2 nts=10 CCAAGCGACG X.C2493,X.C2494,X.A2495,X.A2496,X.G2497,X.C2507,X.G2508,X.A2509,X.C2510,X.G2511 nts=3 CAA X.C2494,X.A2495,X.A2496 nts=3 GAC X.G2508,X.A2509,X.C2510 47 symmetric internal loop: nts=10; [3,3]; linked by [#158,#159] summary: [2] 3 3 [X.2714 X.2749 X.2718 X.2745] 4 5 nts=10 UGUACGGUAG X.U2714,X.G2715,X.U2716,X.A2717,X.C2718,X.G2745,X.G2746,X.U2747,X.A2748,X.G2749 nts=3 GUA X.G2715,X.U2716,X.A2717 nts=3 GUA X.G2746,X.U2747,X.A2748 48 symmetric internal loop: nts=10; [3,3]; linked by [#174,#-66] summary: [2] 3 3 [Y.32 Y.46 Y.36 Y.42] 4 1 nts=10 UUCCCGAACA Y.U32,Y.U33,Y.C34,Y.C35,Y.C36,Y.G42,Y.A43,Y.A44,Y.C45,Y.A46 nts=3 UCC Y.U33,Y.C34,Y.C35 nts=3 AAC Y.A43,Y.A44,Y.C45 49 asymmetric internal loop: nts=11; [3,4]; linked by [#95,#-33] summary: [2] 3 4 [X.1481 X.1603 X.1485 X.1598] 2 1 nts=11 AUAGGUGAUUU X.A1481,X.U1482,X.A1483,X.G1484,X.G1485,X.U1598,X.G1599,X.A1600,X.U1601,X.U1602,X.U1603 nts=3 UAG X.U1482,X.A1483,X.G1484 nts=4 GAUU X.G1599,X.A1600,X.U1601,X.U1602 50 asymmetric internal loop: nts=11; [3,4]; linked by [#-42,#105] summary: [2] 3 4 [X.1757 X.1773 X.1761 X.1768] 1 2 nts=11 UAGGGCCCAGA X.U1757,X.A1758,X.G1759,X.G1760,X.G1761,X.C1768,X.C1769,X.C1770,X.A1771,X.G1772,X.A1773 nts=3 AGG X.A1758,X.G1759,X.G1760 nts=4 CCAG X.C1769,X.C1770,X.A1771,X.G1772 51 asymmetric internal loop: nts=11; [3,4]; linked by [#117,#-44] summary: [2] 3 4 [X.1891 X.1905 X.1895 X.1900] 4 1 nts=11 UUAGCGCGAAG X.U1891,X.U1892,X.A1893,X.G1894,X.C1895,X.G1900,X.C1901,X.G1902,X.A1903,X.A1904,X.G1905 nts=3 UAG X.U1892,X.A1893,X.G1894 nts=4 CGAA X.C1901,X.G1902,X.A1903,X.A1904 52 asymmetric internal loop: nts=11; [4,3]; linked by [#168,#169] summary: [2] 4 3 [X.2867 X.2889 X.2872 X.2885] 3 5 nts=11 UGGAAGUGGAG X.U2867,X.G2868,X.G2869,X.A2870,X.A2871,X.G2872,X.U2885,X.G2886,X.G2887,X.A2888,X.G2889 nts=4 GGAA X.G2868,X.G2869,X.A2870,X.A2871 nts=3 GGA X.G2886,X.G2887,X.A2888 53 symmetric internal loop: nts=12; [4,4]; linked by [#61,#-24] summary: [2] 4 4 [X.920 X.947 X.925 X.942] 8 1 nts=12 ACGAGGCCGAAU X.A920,X.C921,X.G922,X.A923,X.G924,X.G925,X.C942,X.C943,X.G944,X.A945,X.A946,X.U947 nts=4 CGAG X.C921,X.G922,X.A923,X.G924 nts=4 CGAA X.C943,X.G944,X.A945,X.A946 54 asymmetric internal loop: nts=12; [5,3]; linked by [#68,#-26] summary: [2] 5 3 [X.1062 X.1188 X.1068 X.1184] 6 1 nts=12 UUAAGUGCUAAA X.U1062,X.U1063,X.A1064,X.A1065,X.G1066,X.U1067,X.G1068,X.C1184,X.U1185,X.A1186,X.A1187,X.A1188 nts=5 UAAGU X.U1063,X.A1064,X.A1065,X.G1066,X.U1067 nts=3 UAA X.U1185,X.A1186,X.A1187 55 symmetric internal loop: nts=12; [4,4]; linked by [#116,#117] summary: [2] 4 4 [X.1883 X.1913 X.1888 X.1908] 2 4 nts=12 AGGAGUACGAAU X.A1883,X.G1884,X.G1885,X.A1886,X.G1887,X.U1888,X.A1908,X.C1909,X.G1910,X.A1911,X.A1912,X.U1913 nts=4 GGAG X.G1884,X.G1885,X.A1886,X.G1887 nts=4 CGAA X.C1909,X.G1910,X.A1911,X.A1912 56 symmetric internal loop: nts=12; [4,4]; linked by [#161,#162] summary: [2] 4 4 [X.2764 X.2794 X.2769 X.2789] 3 4 nts=12 GAUAAGUGAAGC X.G2764,X.A2765,X.U2766,X.A2767,X.A2768,X.G2769,X.U2789,X.G2790,X.A2791,X.A2792,X.G2793,X.C2794 nts=4 AUAA X.A2765,X.U2766,X.A2767,X.A2768 nts=4 GAAG X.G2790,X.A2791,X.A2792,X.G2793 57 asymmetric internal loop: nts=13; [3,6]; linked by [#12,#13] summary: [2] 3 6 [X.81 X.104 X.85 X.97] 6 3 k-turn:normal nts=13 GGGAGCUUUGAUC X.G81,X.G82,X.G83,X.A84,X.G85,X.C97,X.U98,X.U99,X.U100,X.G101,X.A102,X.U103,X.C104 nts=3 GGA X.G82,X.G83,X.A84 nts=6 UUUGAU X.U98,X.U99,X.U100,X.G101,X.A102,X.U103 58 asymmetric internal loop: nts=13; [3,6]; linked by [#-16,#47] summary: [2] 3 6 [X.719 X.851 X.723 X.844] 1 6 nts=13 GAAACGAGAUAGC X.G719,X.A720,X.A721,X.A722,X.C723,X.G844,X.A845,X.G846,X.A847,X.U848,X.A849,X.G850,X.C851 nts=3 AAA X.A720,X.A721,X.A722 nts=6 AGAUAG X.A845,X.G846,X.A847,X.U848,X.A849,X.G850 59 asymmetric internal loop: nts=13; [6,3]; linked by [#75,#76] summary: [2] 6 3 [X.1246 X.1276 X.1253 X.1272] 2 5 k-turn:normal nts=13 CGUUGAAGUGGAG X.C1246,X.G1247,X.U1248,X.U1249,X.G1250,X.A1251,X.A1252,X.G1253,X.U1272,X.G1273,X.G1274,X.A1275,X.G1276 nts=6 GUUGAA X.G1247,X.U1248,X.U1249,X.G1250,X.A1251,X.A1252 nts=3 GGA X.G1273,X.G1274,X.A1275 60 asymmetric internal loop: nts=13; [4,5]; linked by [#103,#-40] summary: [2] 4 5 [X.1730 X.1746 X.1735 X.1740] 5 1 nts=13 CGUAACGGAGAAG X.C1730,X.G1731,X.U1732,X.A1733,X.A1734,X.C1735,X.G1740,X.G1741,X.A1742,X.G1743,X.A1744,X.A1745,X.G1746 nts=4 GUAA X.G1731,X.U1732,X.A1733,X.A1734 nts=5 GAGAA X.G1741,X.A1742,X.G1743,X.A1744,X.A1745 61 asymmetric internal loop: nts=13; [5,4]; linked by [#156,#-61] summary: [2] 5 4 [X.2679 X.2695 X.2685 X.2690] 7 1 nts=13 UUAGUACGGACCG X.U2679,X.U2680,X.A2681,X.G2682,X.U2683,X.A2684,X.C2685,X.G2690,X.G2691,X.A2692,X.C2693,X.C2694,X.G2695 nts=5 UAGUA X.U2680,X.A2681,X.G2682,X.U2683,X.A2684 nts=4 GACC X.G2691,X.A2692,X.C2693,X.C2694 62 symmetric internal loop: nts=14; [5,5]; linked by [#2,#-1] summary: [2] 5 5 [X.24 X.561 X.30 X.555] 10 1 nts=14 GUGGAUGCUGAAAC X.G24,X.U25,X.G26,X.G27,X.A28,X.U29,X.G30,X.C555,X.U556,X.G557,X.A558,X.A559,X.A560,X.C561 nts=5 UGGAU X.U25,X.G26,X.G27,X.A28,X.U29 nts=5 UGAAA X.U556,X.G557,X.A558,X.A559,X.A560 63 symmetric internal loop: nts=14; [5,5]; linked by [#59,#-23] summary: [2] 5 5 [X.901 X.966 X.907 X.960] 4 1 nts=14 GAGGUAGCGAAUGC X.G901,X.A902,X.G903,X.G904,X.U905,X.A906,X.G907,X.C960,X.G961,X.A962,X.A963,X.U964,X.G965,X.C966 nts=5 AGGUA X.A902,X.G903,X.G904,X.U905,X.A906 nts=5 GAAUG X.G961,X.A962,X.A963,X.U964,X.G965 64 asymmetric internal loop: nts=14; [7,3]; linked by [#71,#72] summary: [2] 7 3 [X.1087 X.1156 X.1095 X.1152] 5 2 nts=14 CCCAGACAAUCGAG X.C1087,X.C1088,X.C1089,X.A1090,X.G1091,X.A1092,X.C1093,X.A1094,X.A1095,X.U1152,X.C1153,X.G1154,X.A1155,X.G1156 nts=7 CCAGACA X.C1088,X.C1089,X.A1090,X.G1091,X.A1092,X.C1093,X.A1094 nts=3 CGA X.C1153,X.G1154,X.A1155 65 asymmetric internal loop: nts=14; [3,7]; linked by [#154,#155] summary: [2] 3 7 [X.2663 X.2809 X.2667 X.2801] 7 4 nts=14 UUGAGCAAGAUGAG X.U2663,X.U2664,X.G2665,X.A2666,X.G2667,X.C2801,X.A2802,X.A2803,X.G2804,X.A2805,X.U2806,X.G2807,X.A2808,X.G2809 nts=3 UGA X.U2664,X.G2665,X.A2666 nts=7 AAGAUGA X.A2802,X.A2803,X.G2804,X.A2805,X.U2806,X.G2807,X.A2808 66 asymmetric internal loop: nts=15; [6,5]; linked by [#20,#21] summary: [2] 6 5 [X.241 X.262 X.248 X.256] 4 2 nts=15 CUUAGUAGCGAAACG X.C241,X.U242,X.U243,X.A244,X.G245,X.U246,X.A247,X.G248,X.C256,X.G257,X.A258,X.A259,X.A260,X.C261,X.G262 nts=6 UUAGUA X.U242,X.U243,X.A244,X.G245,X.U246,X.A247 nts=5 GAAAC X.G257,X.A258,X.A259,X.A260,X.C261 67 asymmetric internal loop: nts=15; [6,5]; linked by [#-30,#78] summary: [2] 6 5 [X.1300 X.2044 X.1307 X.2038] 1 2 nts=15 GUGAGUAGUGAAAUC X.G1300,X.U1301,X.G1302,X.A1303,X.G1304,X.U1305,X.A1306,X.G1307,X.U2038,X.G2039,X.A2040,X.A2041,X.A2042,X.U2043,X.C2044 nts=6 UGAGUA X.U1301,X.G1302,X.A1303,X.G1304,X.U1305,X.A1306 nts=5 GAAAU X.G2039,X.A2040,X.A2041,X.A2042,X.U2043 68 asymmetric internal loop: nts=15; [6,5]; linked by [#172,#173] summary: [2] 6 5 [Y.20 Y.59 Y.27 Y.53] 2 2 nts=15 AGGUCACAUUAAGGU Y.A20,Y.G21,Y.G22,Y.U23,Y.C24,Y.A25,Y.C26,Y.A27,Y.U53,Y.U54,Y.A55,Y.A56,Y.G57,Y.G58,Y.U59 nts=6 GGUCAC Y.G21,Y.G22,Y.U23,Y.C24,Y.A25,Y.C26 nts=5 UAAGG Y.U54,Y.A55,Y.A56,Y.G57,Y.G58 69 asymmetric internal loop: nts=16; [5,7]; linked by [#109,#110] summary: [2] 5 7 [X.1825 X.1848 X.1831 X.1840] 7 3 k-turn:undecided nts=16 UGCUAAAUGAUGUAUA X.U1825,X.G1826,X.C1827,X.U1828,X.A1829,X.A1830,X.A1831,X.U1840,X.G1841,X.A1842,X.U1843,X.G1844,X.U1845,X.A1846,X.U1847,X.A1848 nts=5 GCUAA X.G1826,X.C1827,X.U1828,X.A1829,X.A1830 nts=7 GAUGUAU X.G1841,X.A1842,X.U1843,X.G1844,X.U1845,X.A1846,X.U1847 70 asymmetric internal loop: nts=16; [10,2]; linked by [#-46,#118] summary: [2] 10 2 [X.1961 X.1991 X.1972 X.1988] 1 5 nts=16 CGAAAUUCCUUGCCCG X.C1961,X.G1962,X.A1963,X.A1964,X.A1965,X.U1966,X.U1967,X.C1968,X.C1969,X.U1970,X.U1971,X.G1972,X.C1988,X.C1989,X.C1990,X.G1991 nts=10 GAAAUUCCUU X.G1962,X.A1963,X.A1964,X.A1965,X.U1966,X.U1967,X.C1968,X.C1969,X.U1970,X.U1971 nts=2 CC X.C1989,X.C1990 71 asymmetric internal loop: nts=17; [6,7]; linked by [#18,#-4] summary: [2] 6 7 [X.190 X.212 X.197 X.204] 4 1 nts=17 GAGAACUGCUUAGUACC X.G190,X.A191,X.G192,X.A193,X.A194,X.C195,X.U196,X.G197,X.C204,X.U205,X.U206,X.A207,X.G208,X.U209,X.A210,X.C211,X.C212 nts=6 AGAACU X.A191,X.G192,X.A193,X.A194,X.C195,X.U196 nts=7 UUAGUAC X.U205,X.U206,X.A207,X.G208,X.U209,X.A210,X.C211 72 asymmetric internal loop: nts=18; [2,12]; linked by [#-9,#36] summary: [2] 2 12 [X.527 X.554 X.530 X.541] 1 4 nts=18 GCACGAGUGAAAUAGAAC X.G527,X.C528,X.A529,X.C530,X.G541,X.A542,X.G543,X.U544,X.G545,X.A546,X.A547,X.A548,X.U549,X.A550,X.G551,X.A552,X.A553,X.C554 nts=2 CA X.C528,X.A529 nts=12 AGUGAAAUAGAA X.A542,X.G543,X.U544,X.G545,X.A546,X.A547,X.A548,X.U549,X.A550,X.G551,X.A552,X.A553 73 asymmetric internal loop: nts=49; [5,40]; linked by [#-65,#170] summary: [2] 5 40 [Y.8 Y.107 Y.14 Y.66] 1 2 nts=49 ACUAUAGCGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUU Y.A8,Y.C9,Y.U10,Y.A11,Y.U12,Y.A13,Y.G14,Y.C66,Y.G67,Y.A68,Y.C69,Y.G70,Y.A71,Y.U72,Y.G73,Y.G74,Y.U75,Y.A76,Y.G77,Y.C78,Y.C79,Y.A80,Y.A81,Y.C82,Y.U83,Y.U84,Y.A85,Y.C86,Y.G87,Y.U88,Y.U89,Y.C90,Y.C91,Y.G92,Y.C93,Y.U94,Y.A95,Y.G96,Y.A97,Y.G98,Y.U99,Y.A100,Y.G101,Y.A102,Y.A103,Y.C104,Y.G105,Y.U106,Y.U107 nts=5 CUAUA Y.C9,Y.U10,Y.A11,Y.U12,Y.A13 nts=40 GACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGU Y.G67,Y.A68,Y.C69,Y.G70,Y.A71,Y.U72,Y.G73,Y.G74,Y.U75,Y.A76,Y.G77,Y.C78,Y.C79,Y.A80,Y.A81,Y.C82,Y.U83,Y.U84,Y.A85,Y.C86,Y.G87,Y.U88,Y.U89,Y.C90,Y.C91,Y.G92,Y.C93,Y.U94,Y.A95,Y.G96,Y.A97,Y.G98,Y.U99,Y.A100,Y.G101,Y.A102,Y.A103,Y.C104,Y.G105,Y.U106 **************************************************************************** List of 32 junctions 1 3-way junction: nts=9; [1,2,0]; linked by [#-15,#40,#46] summary: [3] 1 2 0 [X.630 X.855 X.632 X.713 X.716 X.854] 1 7 2 nts=9 GUUAGACGU X.G630,X.U631,X.U632,X.A713,X.G714,X.A715,X.C716,X.G854,X.U855 nts=1 U X.U631 nts=2 GA X.G714,X.A715 nts=0 2 3-way junction: nts=12; [0,6,0]; linked by [#-1,#3,#-9] summary: [3] 0 6 0 [X.30 X.555 X.31 X.520 X.527 X.554] 1 2 1 nts=12 GCGUGAAAAGCC X.G30,X.C31,X.G520,X.U521,X.G522,X.A523,X.A524,X.A525,X.A526,X.G527,X.C554,X.C555 nts=0 nts=6 UGAAAA X.U521,X.G522,X.A523,X.A524,X.A525,X.A526 nts=0 3 3-way junction: nts=12; [1,3,2]; linked by [#-17,#49,#51] summary: [3] 1 3 2 [X.743 X.808 X.745 X.777 X.781 X.805] 1 3 3 nts=12 CAGCGAACGAUG X.C743,X.A744,X.G745,X.C777,X.G778,X.A779,X.A780,X.C781,X.G805,X.A806,X.U807,X.G808 nts=1 A X.A744 nts=3 GAA X.G778,X.A779,X.A780 nts=2 AU X.A806,X.U807 4 3-way junction: nts=12; [1,1,4]; linked by [#135,#-52,#137] summary: [3] 1 1 4 [X.2322 X.2364 X.2324 X.2348 X.2350 X.2359] 7 1 2 nts=12 CUCGAGCAUAAG X.C2322,X.U2323,X.C2324,X.G2348,X.A2349,X.G2350,X.C2359,X.A2360,X.U2361,X.A2362,X.A2363,X.G2364 nts=1 U X.U2323 nts=1 A X.A2349 nts=4 AUAA X.A2360,X.U2361,X.A2362,X.A2363 5 3-way junction: nts=13; [4,1,2]; linked by [#80,#81,#99] summary: [3] 4 1 2 [X.1335 X.1686 X.1340 X.1669 X.1671 X.1683] 4 3 3 nts=13 CGAUUGCAAUAAG X.C1335,X.G1336,X.A1337,X.U1338,X.U1339,X.G1340,X.C1669,X.A1670,X.A1671,X.U1683,X.A1684,X.A1685,X.G1686 nts=4 GAUU X.G1336,X.A1337,X.U1338,X.U1339 nts=1 A X.A1670 nts=2 AA X.A1684,X.A1685 6 3-way junction: nts=13; [0,4,3]; linked by [#-62,#163,#164] summary: [3] 0 4 3 [X.2816 X.2913 X.2817 X.2826 X.2831 X.2909] 1 3 4 nts=13 CAUAUAAGCGAAG X.C2816,X.A2817,X.U2826,X.A2827,X.U2828,X.A2829,X.A2830,X.G2831,X.C2909,X.G2910,X.A2911,X.A2912,X.G2913 nts=0 nts=4 AUAA X.A2827,X.U2828,X.A2829,X.A2830 nts=3 GAA X.G2910,X.A2911,X.A2912 7 3-way junction: nts=13; [0,4,3]; linked by [#164,#165,#166] summary: [3] 0 4 3 [X.2834 X.2906 X.2835 X.2851 X.2856 X.2902] 4 5 3 nts=13 CCGUUAAUAAUCG X.C2834,X.C2835,X.G2851,X.U2852,X.U2853,X.A2854,X.A2855,X.U2856,X.A2902,X.A2903,X.U2904,X.C2905,X.G2906 nts=0 nts=4 UUAA X.U2852,X.U2853,X.A2854,X.A2855 nts=3 AUC X.A2903,X.U2904,X.C2905 8 3-way junction: nts=14; [2,1,5]; linked by [#148,#149,#151] summary: [3] 2 1 5 [X.2544 X.2594 X.2547 X.2572 X.2574 X.2588] 5 3 5 nts=14 CAUCGUUAUUAAAG X.C2544,X.A2545,X.U2546,X.C2547,X.G2572,X.U2573,X.U2574,X.A2588,X.U2589,X.U2590,X.A2591,X.A2592,X.A2593,X.G2594 nts=2 AU X.A2545,X.U2546 nts=1 U X.U2573 nts=5 UUAAA X.U2589,X.U2590,X.A2591,X.A2592,X.A2593 9 3-way junction: nts=15; [4,0,5]; linked by [#93,#94,#-37] summary: [3] 4 0 5 [X.1468 X.1621 X.1473 X.1611 X.1612 X.1615] 4 4 1 nts=15 GGGACGCCGAAAAGC X.G1468,X.G1469,X.G1470,X.A1471,X.C1472,X.G1473,X.C1611,X.C1612,X.G1615,X.A1616,X.A1617,X.A1618,X.A1619,X.G1620,X.C1621 nts=4 GGAC X.G1469,X.G1470,X.A1471,X.C1472 nts=0 nts=5 AAAAG X.A1616,X.A1617,X.A1618,X.A1619,X.G1620 10 3-way junction: nts=16; [3,5,2]; linked by [#81,#82,#98] summary: [3] 3 5 2 [X.1342 X.1667 X.1346 X.1649 X.1655 X.1664] 3 2 2 nts=16 CUAAGCGCAAACGUAG X.C1342,X.U1343,X.A1344,X.A1345,X.G1346,X.C1649,X.G1650,X.C1651,X.A1652,X.A1653,X.A1654,X.C1655,X.G1664,X.U1665,X.A1666,X.G1667 nts=3 UAA X.U1343,X.A1344,X.A1345 nts=5 GCAAA X.G1650,X.C1651,X.A1652,X.A1653,X.A1654 nts=2 UA X.U1665,X.A1666 11 3-way junction: nts=16; [1,4,5]; linked by [#128,#129,#130] summary: [3] 1 4 5 [X.2118 X.2255 X.2120 X.2223 X.2228 X.2249] 6 4 2 nts=16 UUGCUAACCGAGACAG X.U2118,X.U2119,X.G2120,X.C2223,X.U2224,X.A2225,X.A2226,X.C2227,X.C2228,X.G2249,X.A2250,X.G2251,X.A2252,X.C2253,X.A2254,X.G2255 nts=1 U X.U2119 nts=4 UAAC X.U2224,X.A2225,X.A2226,X.C2227 nts=5 AGACA X.A2250,X.G2251,X.A2252,X.C2253,X.A2254 12 3-way junction: nts=18; [2,6,4]; linked by [#-6,#25,#32] summary: [3] 2 6 4 [X.300 X.450 X.303 X.414 X.421 X.445] 1 3 7 nts=18 GUAGCUGAGUACGGAAUC X.G300,X.U301,X.A302,X.G303,X.C414,X.U415,X.G416,X.A417,X.G418,X.U419,X.A420,X.C421,X.G445,X.G446,X.A447,X.A448,X.U449,X.C450 nts=2 UA X.U301,X.A302 nts=6 UGAGUA X.U415,X.G416,X.A417,X.G418,X.U419,X.A420 nts=4 GAAU X.G446,X.A447,X.A448,X.U449 13 3-way junction: nts=27; [2,15,4]; linked by [#3,#4,#35] summary: [3] 2 15 4 [X.32 X.519 X.35 X.491 X.507 X.514] 2 2 2 nts=27 CUUGCGAUAGUGAACCAGUACGGAAAG X.C32,X.U33,X.U34,X.G35,X.C491,X.G492,X.A493,X.U494,X.A495,X.G496,X.U497,X.G498,X.A499,X.A500,X.C501,X.C502,X.A503,X.G504,X.U505,X.A506,X.C507,X.G514,X.G515,X.A516,X.A517,X.A518,X.G519 nts=2 UU X.U33,X.U34 nts=15 GAUAGUGAACCAGUA X.G492,X.A493,X.U494,X.A495,X.G496,X.U497,X.G498,X.A499,X.A500,X.C501,X.C502,X.A503,X.G504,X.U505,X.A506 nts=4 GAAA X.G515,X.A516,X.A517,X.A518 14 4-way junction: nts=8; [0,0,0,0]; linked by [#-51,#134,#138,#137] summary: [4] 0 0 0 0 [X.2310 X.2352 X.2311 X.2411 X.2412 X.2357 X.2358 X.2351] 1 2 3 2 nts=8 CUACGGUG X.C2310,X.U2311,X.A2411,X.C2412,X.G2357,X.G2358,X.U2351,X.G2352 nts=0 nts=0 nts=0 nts=0 15 4-way junction: nts=11; [1,1,0,1]; linked by [#9,#10,#13,#11] summary: [4] 1 1 0 1 [X.59 X.68 X.61 X.93 X.95 X.87 X.88 X.66] 3 2 3 2 nts=11 UUAUAAUGCGA X.U59,X.U60,X.A61,X.U93,X.A94,X.A95,X.U87,X.G88,X.C66,X.G67,X.A68 nts=1 U X.U60 nts=1 A X.A94 nts=0 nts=1 G X.G67 16* 4-way junction: nts=14; [2,2,2,0]; linked by [#33,#34,#143,#34] summary: [4] 2 2 2 0 [X.456 X.463 X.459 X.2437 X.2440 X.2431 X.2434 X.462] 5 4 2 4 nts=14 GGACGAAGCGCAUC X.G456,X.G457,X.A458,X.C459,X.G2437,X.A2438,X.A2439,X.G2440,X.C2431,X.G2432,X.C2433,X.A2434,X.U462,X.C463 nts=2 GA X.G457,X.A458 nts=2 AA X.A2438,X.A2439 nts=2 GC X.G2432,X.C2433 nts=0 17 4-way junction: nts=14; [4,0,2,0]; linked by [#78,#79,#80,#100] summary: [4] 4 0 2 0 [X.1308 X.2037 X.1313 X.1331 X.1332 X.1689 X.1692 X.2036] 2 6 4 4 nts=14 CGAAAGCCGAGCGG X.C1308,X.G1309,X.A1310,X.A1311,X.A1312,X.G1313,X.C1331,X.C1332,X.G1689,X.A1690,X.G1691,X.C1692,X.G2036,X.G2037 nts=4 GAAA X.G1309,X.A1310,X.A1311,X.A1312 nts=0 nts=2 AG X.A1690,X.G1691 nts=0 18 4-way junction: nts=15; [2,1,3,1]; linked by [#155,#156,#157,#161] summary: [4] 2 1 3 1 [X.2670 X.2798 X.2673 X.2701 X.2703 X.2758 X.2762 X.2796] 4 7 5 3 nts=15 GAGCGACGGACGCCC X.G2670,X.A2671,X.G2672,X.C2673,X.G2701,X.A2702,X.C2703,X.G2758,X.G2759,X.A2760,X.C2761,X.G2762,X.C2796,X.C2797,X.C2798 nts=2 AG X.A2671,X.G2672 nts=1 A X.A2702 nts=3 GAC X.G2759,X.A2760,X.C2761 nts=1 C X.C2797 19 4-way junction: nts=16; [2,1,0,5]; linked by [#39,#-15,#54,#-29] summary: [4] 2 1 0 5 [X.627 X.1294 X.630 X.855 X.857 X.1234 X.1235 X.1288] 6 1 6 1 nts=16 CGAGUUCGCGAGAAUG X.C627,X.G628,X.A629,X.G630,X.U855,X.U856,X.C857,X.G1234,X.C1235,X.G1288,X.A1289,X.G1290,X.A1291,X.A1292,X.U1293,X.G1294 nts=2 GA X.G628,X.A629 nts=1 U X.U856 nts=0 nts=5 AGAAU X.A1289,X.G1290,X.A1291,X.A1292,X.U1293 20 4-way junction: nts=16; [3,3,1,1]; linked by [#134,#135,#139,#141] summary: [4] 3 3 1 1 [X.2312 X.2410 X.2316 X.2370 X.2374 X.2397 X.2399 X.2408] 2 7 4 3 nts=16 CAAAGUUGACGGGCGG X.C2312,X.A2313,X.A2314,X.A2315,X.G2316,X.U2370,X.U2371,X.G2372,X.A2373,X.C2374,X.G2397,X.G2398,X.G2399,X.C2408,X.G2409,X.G2410 nts=3 AAA X.A2313,X.A2314,X.A2315 nts=3 UGA X.U2371,X.G2372,X.A2373 nts=1 G X.G2398 nts=1 G X.G2409 21 4-way junction: nts=18; [0,0,5,5]; linked by [#-50,#-51,#-53,#142] summary: [4] 0 0 5 5 [X.2309 X.2454 X.2310 X.2352 X.2353 X.2416 X.2422 X.2448] 1 1 1 7 nts=18 GCGUGUGAUCCGCUCAAC X.G2309,X.C2310,X.G2352,X.U2353,X.G2416,X.U2417,X.G2418,X.A2419,X.U2420,X.C2421,X.C2422,X.G2448,X.C2449,X.U2450,X.C2451,X.A2452,X.A2453,X.C2454 nts=0 nts=0 nts=5 UGAUC X.U2417,X.G2418,X.A2419,X.U2420,X.C2421 nts=5 CUCAA X.C2449,X.U2450,X.C2451,X.A2452,X.A2453 22 4-way junction: nts=19; [4,4,1,2]; linked by [#22,#23,#-6,#33] summary: [4] 4 4 1 2 [X.271 X.470 X.276 X.295 X.300 X.450 X.452 X.467] 3 5 1 5 nts=19 CCAAACGGGUUGCUGUAAG X.C271,X.C272,X.A273,X.A274,X.A275,X.C276,X.G295,X.G296,X.G297,X.U298,X.U299,X.G300,X.C450,X.U451,X.G452,X.U467,X.A468,X.A469,X.G470 nts=4 CAAA X.C272,X.A273,X.A274,X.A275 nts=4 GGUU X.G296,X.G297,X.U298,X.U299 nts=1 U X.U451 nts=2 AA X.A468,X.A469 23 4-way junction: nts=22; [2,3,3,6]; linked by [#41,#42,#44,#45] summary: [4] 2 3 3 6 [X.644 X.701 X.647 X.669 X.673 X.680 X.684 X.694] 5 3 2 3 nts=22 CAAGCGUAGCGAGUGCGUUUAG X.C644,X.A645,X.A646,X.G647,X.C669,X.G670,X.U671,X.A672,X.G673,X.C680,X.G681,X.A682,X.G683,X.U684,X.G694,X.C695,X.G696,X.U697,X.U698,X.U699,X.A700,X.G701 nts=2 AA X.A645,X.A646 nts=3 GUA X.G670,X.U671,X.A672 nts=3 GAG X.G681,X.A682,X.G683 nts=6 CGUUUA X.C695,X.G696,X.U697,X.U698,X.U699,X.A700 24 5-way junction: nts=22; [6,4,0,1,1]; linked by [#7,#8,#14,#15,#16] summary: [5] 6 4 0 1 1 [X.47 X.180 X.54 X.115 X.120 X.129 X.130 X.149 X.151 X.178] 2 3 3 7 2 nts=22 CAAUGAAGCGAAUGCAUAUAAG X.C47,X.A48,X.A49,X.U50,X.G51,X.A52,X.A53,X.G54,X.C115,X.G116,X.A117,X.A118,X.U119,X.G120,X.C129,X.A130,X.U149,X.A150,X.U151,X.A178,X.A179,X.G180 nts=6 AAUGAA X.A48,X.A49,X.U50,X.G51,X.A52,X.A53 nts=4 GAAU X.G116,X.A117,X.A118,X.U119 nts=0 nts=1 A X.A150 nts=1 A X.A179 25 5-way junction: nts=25; [7,0,0,7,1]; linked by [#-39,#103,#104,#-43,#106] summary: [5] 7 0 0 7 1 [X.1718 X.2017 X.1726 X.1750 X.1751 X.1778 X.1779 X.1783 X.1791 X.2015] 1 5 5 1 7 nts=25 GCAAAAUGAUGCCGUGAAUAGGCAC X.G1718,X.C1719,X.A1720,X.A1721,X.A1722,X.A1723,X.U1724,X.G1725,X.A1726,X.U1750,X.G1751,X.C1778,X.C1779,X.G1783,X.U1784,X.G1785,X.A1786,X.A1787,X.U1788,X.A1789,X.G1790,X.G1791,X.C2015,X.A2016,X.C2017 nts=7 CAAAAUG X.C1719,X.A1720,X.A1721,X.A1722,X.A1723,X.U1724,X.G1725 nts=0 nts=0 nts=7 UGAAUAG X.U1784,X.G1785,X.A1786,X.A1787,X.U1788,X.A1789,X.G1790 nts=1 A X.A2016 26 5-way junction: nts=37; [6,6,6,5,4]; linked by [#122,#123,#-55,#-58,#152] summary: [5] 6 6 6 5 4 [X.2084 X.2638 X.2091 X.2473 X.2480 X.2527 X.2534 X.2609 X.2615 X.2633] 2 4 1 1 4 nts=37 GAAAGACCGGAUAACAUCGAUGUCGGUUCAGCGGUCC X.G2084,X.A2085,X.A2086,X.A2087,X.G2088,X.A2089,X.C2090,X.C2091,X.G2473,X.G2474,X.A2475,X.U2476,X.A2477,X.A2478,X.C2479,X.A2480,X.U2527,X.C2528,X.G2529,X.A2530,X.U2531,X.G2532,X.U2533,X.C2534,X.G2609,X.G2610,X.U2611,X.U2612,X.C2613,X.A2614,X.G2615,X.C2633,X.G2634,X.G2635,X.U2636,X.C2637,X.C2638 nts=6 AAAGAC X.A2085,X.A2086,X.A2087,X.G2088,X.A2089,X.C2090 nts=6 GAUAAC X.G2474,X.A2475,X.U2476,X.A2477,X.A2478,X.C2479 nts=6 CGAUGU X.C2528,X.G2529,X.A2530,X.U2531,X.G2532,X.U2533 nts=5 GUUCA X.G2610,X.U2611,X.U2612,X.C2613,X.A2614 nts=4 GGUC X.G2634,X.G2635,X.U2636,X.C2637 27 6-way junction: nts=22; [1,1,0,2,1,5]; linked by [#-12,#-13,#39,#-30,#-47,#119] summary: [6] 1 1 0 2 1 5 [X.605 X.2060 X.607 X.620 X.622 X.1299 X.1300 X.2044 X.2047 X.2061 X.2063 X.2054] 1 1 6 1 1 5 nts=22 UGCGAAUGCAUAUGCGUGAAGA X.U605,X.G606,X.C607,X.G620,X.A621,X.A622,X.U1299,X.G1300,X.C2044,X.A2045,X.U2046,X.A2047,X.U2061,X.G2062,X.C2063,X.G2054,X.U2055,X.G2056,X.A2057,X.A2058,X.G2059,X.A2060 nts=1 G X.G606 nts=1 A X.A621 nts=0 nts=2 AU X.A2045,X.U2046 nts=1 G X.G2062 nts=5 UGAAG X.U2055,X.G2056,X.A2057,X.A2058,X.G2059 28* 6-way junction: nts=34; [0,1,5,12,4,0]; linked by [#66,#67,#-26,#69,#67,#-25] summary: [6] 0 1 5 12 4 0 [X.1048 X.1195 X.1049 X.1182 X.1184 X.1068 X.1074 X.1168 X.1181 X.1050 X.1055 X.1194] 3 2 1 2 2 1 nts=34 UCGGCGGAAAAGCGAAAAUGUACCGGCCAAAAUA X.U1048,X.C1049,X.G1182,X.G1183,X.C1184,X.G1068,X.G1069,X.A1070,X.A1071,X.A1072,X.A1073,X.G1074,X.C1168,X.G1169,X.A1170,X.A1171,X.A1172,X.A1173,X.U1174,X.G1175,X.U1176,X.A1177,X.C1178,X.C1179,X.G1180,X.G1181,X.C1050,X.C1051,X.A1052,X.A1053,X.A1054,X.A1055,X.U1194,X.A1195 nts=0 nts=1 G X.G1183 nts=5 GAAAA X.G1069,X.A1070,X.A1071,X.A1072,X.A1073 nts=12 GAAAAUGUACCG X.G1169,X.A1170,X.A1171,X.A1172,X.A1173,X.U1174,X.G1175,X.U1176,X.A1177,X.C1178,X.C1179,X.G1180 nts=4 CAAA X.C1051,X.A1052,X.A1053,X.A1054 nts=0 29 6-way junction: nts=37; [0,4,9,3,3,6]; linked by [#6,#7,#-3,#19,#20,#22] summary: [6] 0 4 9 3 3 6 [X.45 X.479 X.46 X.181 X.186 X.217 X.227 X.234 X.238 X.265 X.269 X.472] 2 2 1 2 4 3 nts=37 GCGCACACGGAAGAGAAAGCGAUUAAGAGCUAAAUAC X.G45,X.C46,X.G181,X.C182,X.A183,X.C184,X.A185,X.C186,X.G217,X.G218,X.A219,X.A220,X.G221,X.A222,X.G223,X.A224,X.A225,X.A226,X.G227,X.C234,X.G235,X.A236,X.U237,X.U238,X.A265,X.A266,X.G267,X.A268,X.G269,X.C472,X.U473,X.A474,X.A475,X.A476,X.U477,X.A478,X.C479 nts=0 nts=4 CACA X.C182,X.A183,X.C184,X.A185 nts=9 GAAGAGAAA X.G218,X.A219,X.A220,X.G221,X.A222,X.G223,X.A224,X.A225,X.A226 nts=3 GAU X.G235,X.A236,X.U237 nts=3 AGA X.A266,X.G267,X.A268 nts=6 UAAAUA X.U473,X.A474,X.A475,X.A476,X.U477,X.A478 30* 7-way junction: nts=26; [3,0,0,5,0,1,3]; linked by [#28,#29,#30,#31,#30,#-7,#31] summary: [7] 3 0 0 5 0 1 3 [X.340 X.384 X.344 X.359 X.360 X.377 X.378 X.370 X.376 X.361 X.362 X.366 X.368 X.380] 3 5 2 3 2 1 3 nts=26 CGAAUAAUCGUAAUAAUCGAAUGUAG X.C340,X.G341,X.A342,X.A343,X.U344,X.A359,X.A360,X.U377,X.C378,X.G370,X.U371,X.A372,X.A373,X.U374,X.A375,X.A376,X.U361,X.C362,X.G366,X.A367,X.A368,X.U380,X.G381,X.U382,X.A383,X.G384 nts=3 GAA X.G341,X.A342,X.A343 nts=0 nts=0 nts=5 UAAUA X.U371,X.A372,X.A373,X.U374,X.A375 nts=0 nts=1 A X.A367 nts=3 GUA X.G381,X.U382,X.A383 31 7-way junction: nts=31; [4,0,2,4,3,0,4]; linked by [#54,#55,#56,#62,#63,#64,#73] summary: [7] 4 0 2 4 3 0 4 [X.862 X.1229 X.867 X.880 X.881 X.987 X.990 X.1015 X.1020 X.1031 X.1035 X.1207 X.1208 X.1224] 6 5 2 10 3 4 7 nts=31 CGAAAUAGUCAGCGAAAGCAGACGAUGGUAG X.C862,X.G863,X.A864,X.A865,X.A866,X.U867,X.A880,X.G881,X.U987,X.C988,X.A989,X.G990,X.C1015,X.G1016,X.A1017,X.A1018,X.A1019,X.G1020,X.C1031,X.A1032,X.G1033,X.A1034,X.C1035,X.G1207,X.A1208,X.U1224,X.G1225,X.G1226,X.U1227,X.A1228,X.G1229 nts=4 GAAA X.G863,X.A864,X.A865,X.A866 nts=0 nts=2 CA X.C988,X.A989 nts=4 GAAA X.G1016,X.A1017,X.A1018,X.A1019 nts=3 AGA X.A1032,X.G1033,X.A1034 nts=0 nts=4 GGUA X.G1225,X.G1226,X.U1227,X.A1228 32* 9-way junction: nts=27; [0,4,0,0,1,3,0,0,1]; linked by [#-31,#83,#85,#91,#86,#87,#90,#85,#86] summary: [9] 0 4 0 0 1 3 0 0 1 [X.1350 X.1647 X.1351 X.1375 X.1380 X.1441 X.1442 X.1641 X.1642 X.1385 X.1387 X.1418 X.1422 X.1439 X.1440 X.1381 X.1382 X.1645] 1 6 2 6 4 2 5 2 4 nts=27 UCGGUUAGCCGCGUCGAUAAUAUCGUA X.U1350,X.C1351,X.G1375,X.G1376,X.U1377,X.U1378,X.A1379,X.G1380,X.C1441,X.C1442,X.G1641,X.C1642,X.G1385,X.U1386,X.C1387,X.G1418,X.A1419,X.U1420,X.A1421,X.A1422,X.U1439,X.A1440,X.U1381,X.C1382,X.G1645,X.U1646,X.A1647 nts=0 nts=4 GUUA X.G1376,X.U1377,X.U1378,X.A1379 nts=0 nts=0 nts=1 U X.U1386 nts=3 AUA X.A1419,X.U1420,X.A1421 nts=0 nts=0 nts=1 U X.U1646 **************************************************************************** List of 47 non-loop single-stranded segments 1 nts=1 A X.A2 2 nts=6 UAUUAA X.U9,X.A10,X.U11,X.U12,X.A13,X.A14 3 nts=1 G X.G75 4 nts=3 AUU X.A110,X.U111,X.U112 5 nts=11* GUAUACAUAGC X.G158,X.U159,X.A162,X.U163,X.A164,X.C165,X.A166,X.U167,X.A168,X.G169,X.C170 6 nts=17* UAUGAGUUACAAAGGAC X.U311,X.A312,X.U313,X.G317,X.A318,X.G319,X.U320,X.U321,X.A322,X.C323,X.A324,X.A325,X.A326,X.G327,X.G328,X.A329,X.C330 7 nts=9 GUCUCUCUU X.G396,X.U397,X.C398,X.U399,X.C400,X.U401,X.C402,X.U403,X.U404 8 nts=5 ACAAG X.A571,X.C572,X.A573,X.A574,X.G575 9 nts=1 A X.A577 10 nts=1 G X.G604 11 nts=5 GAUCU X.G729,X.A730,X.U731,X.C732,X.U733 12 nts=3* GGC X.G757,X.G758,X.C764 13 nts=1 A X.A819 14 nts=4 GUUA X.G938,X.U939,X.U940,X.A941 15 nts=4 CUCA X.C1144,X.U1145,X.C1146,X.A1147 16 nts=2* UU X.U1215,X.U1217 17 nts=4* CGUA X.C1452,X.G1453,X.U1454,X.A1459 18 nts=14 CGAAGCGUGCGAUU X.C1486,X.G1487,X.A1488,X.A1489,X.G1490,X.C1491,X.G1492,X.U1493,X.G1494,X.C1495,X.G1496,X.A1497,X.U1498,X.U1499 19 nts=15 GAUUGCACGUCUAAG X.G1501,X.A1502,X.U1503,X.U1504,X.G1505,X.C1506,X.A1507,X.C1508,X.G1509,X.U1510,X.C1511,X.U1512,X.A1513,X.A1514,X.G1515 20 nts=3* UAG X.U1519,X.A1521,X.G1522 21 nts=2 GA X.G1526,X.A1527 22 nts=6 AUCCGG X.A1539,X.U1540,X.C1541,X.C1542,X.G1543,X.G1544 23 nts=5* UCGUG X.U1548,X.C1549,X.G1550,X.U1551,X.G1555 24 nts=4 UGAG X.U1558,X.G1559,X.A1560,X.G1561 25 nts=21* UGAUGGGGAGAAGAGAGUCGU X.U1565,X.G1566,X.A1567,X.U1568,X.G1569,X.G1570,X.G1571,X.G1572,X.A1573,X.G1574,X.A1575,X.A1576,X.G1577,X.A1578,X.G1591,X.A1592,X.G1593,X.U1594,X.C1595,X.G1596,X.U1597 26 nts=5* UAGAA X.U1629,X.A1630,X.G1631,X.A1632,X.A1635 27 nts=1 A X.A1800 28 nts=1 U X.U1802 29 nts=3 ACA X.A1816,X.C1817,X.A1818 30 nts=1 G X.G1855 31 nts=2 UG X.U1861,X.G1862 32 nts=1 C X.C1865 33 nts=1 U X.U1896 34 nts=11* CGGCUAAGGUA X.C1932,X.G1933,X.G1934,X.C1952,X.U1953,X.A1954,X.A1955,X.G1956,X.G1957,X.U1958,X.A1959 35 nts=4 GAAA X.G1995,X.A1996,X.A1997,X.A1998 36 nts=3 UAA X.U2003,X.A2004,X.A2005 37 nts=2 UA X.U2068,X.A2069 38 nts=2 UU X.U2102,X.U2103 39 nts=1 G X.G2127 40 nts=2 UU X.U2271,X.U2272 41 nts=8* GUUGAAAU X.G2331,X.U2332,X.U2333,X.G2334,X.A2336,X.A2337,X.A2338,X.U2339 42 nts=6 GAUAAA X.G2456,X.A2457,X.U2458,X.A2459,X.A2460,X.A2461 43 nts=3 GUA X.G2654,X.U2655,X.A2656 44 nts=3* UUG X.U2820,X.U2821,X.G2823 45 nts=1 U X.U2920 46 nts=1 U Y.U1 47 nts=1 C Y.C114 **************************************************************************** List of 6 kissing loop interactions 1 isolated-pair #-49 between hairpin loops #46 and #48 2 isolated-pair #-8 between hairpin loops #13 and #15 3 isolated-pair #-5 between hairpin loops #6 and #8 4 stem #10 between hairpin loops #1 and #3 5 stem #11 between hairpin loops #1 and #3 6 stem #34 between hairpin loops #15 and #52 **************************************************************************** List of 142 A-minor motifs (types I, II, or X) 1 type=I A|C-G X.A52|X.C47,X.G180 WC -X.C47 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.22],O2'(hydroxyl)-O2(carbonyl)[3.35]" +X.G180 H-bonds[2]: "N1-O2'(hydroxyl)[2.56],N3-N2(amino)[2.97]" 2 type=X A|A-G X.A71|X.A56,X.G70 -- +X.A56 H-bonds[0]: "" -X.G70 H-bonds[1]: "N1-N2(amino)[2.68]" 3 type=X A|C-G X.A71|X.C57,X.G70 WC +X.C57 H-bonds[0]: "" -X.G70 H-bonds[1]: "N1-N2(amino)[2.68]" 4 type=I A|G-C X.A73|X.G58,X.C69 WC +X.G58 H-bonds[2]: "N1-O2'(hydroxyl)[2.50],N3-N2(amino)[2.97]" -X.C69 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.95]" 5 type=I A|G-C X.A126|X.G55,X.C114 WC +X.G55 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.06],N1-O2'(hydroxyl)[2.64],N3-N2(amino)[3.42]" -X.C114 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.76],O2'(hydroxyl)-O2(carbonyl)[3.32]" 6 type=X A|C-G X.A140|X.C1444,X.G1639 WC -X.C1444 H-bonds[0]: "" +X.G1639 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[2.62],N1-O2'(hydroxyl)[2.93]" 7 type=I A|C-G X.A162|X.C2234,X.G2244 WC -X.C2234 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.46]" +X.G2244 H-bonds[1]: "N1-O2'(hydroxyl)[3.58]" 8 type=X A|G-C X.A183|X.G45,X.C479 WC +X.G45 H-bonds[2]: "N6(amino)-N3[3.23],N1-N2(amino)[3.17]" -X.C479 H-bonds[0]: "" 9 type=II A|G-C X.A185|X.G45,X.C479 WC +X.G45 H-bonds[0]: "" -X.C479 H-bonds[3]: "O2'(hydroxyl)-O3'[3.19],O2'(hydroxyl)-O2'(hydroxyl)[2.78],N3-O2'(hydroxyl)[2.78]" 10 type=X A|C-G X.A193|X.C723,X.G844 WC -X.C723 H-bonds[0]: "" +X.G844 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.25]" 11 type=I A|C-G X.A194|X.C723,X.G844 WC -X.C723 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.94],O2'(hydroxyl)-O2(carbonyl)[3.02]" +X.G844 H-bonds[1]: "N3-N2(amino)[3.38]" 12 type=X A|U-G X.A199|X.U871,X.G876 Wobble -X.U871 H-bonds[0]: "" +X.G876 H-bonds[2]: "N6(amino)-N3[3.42],N1-N2(amino)[3.12]" 13 type=I A|C-G X.A202|X.C2105,X.G2269 WC +X.C2105 H-bonds[1]: "N1-O2'(hydroxyl)[2.82]" -X.G2269 H-bonds[1]: "OP1-O2'(hydroxyl)[3.17]" 14 type=I A|G-C X.A226|X.G453,X.C466 WC +X.G453 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.32],N1-O2'(hydroxyl)[2.58],N3-N2(amino)[2.87]" -X.C466 H-bonds[2]: "O3'-O2'(hydroxyl)[3.07],O2'(hydroxyl)-O2(carbonyl)[2.32]" 15 type=X A|A-U X.A229|X.A455,X.U464 WC +X.A455 H-bonds[0]: "" -X.U464 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.11],N1-O2'(hydroxyl)[3.20]" 16 type=X A|G-C X.A230|X.G456,X.C463 WC +X.G456 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.18]" -X.C463 H-bonds[0]: "" 17 type=I A|G-C X.A254|X.G197,X.C204 WC -X.G197 H-bonds[1]: "N3-N2(amino)[2.93]" +X.C204 H-bonds[1]: "N1-O2'(hydroxyl)[2.80]" 18 type=II A|G-C X.A274|X.G303,X.C414 WC +X.G303 H-bonds[0]: "" -X.C414 H-bonds[2]: "O2'(hydroxyl)-O3'[3.18],N3-O2'(hydroxyl)[2.80]" 19 type=I A|G-C X.A275|X.G304,X.C413 WC +X.G304 H-bonds[1]: "N1-O2'(hydroxyl)[2.68]" -X.C413 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.11],O2'(hydroxyl)-O2(carbonyl)[2.69]" 20 type=I A|G-C X.A337|X.G80,X.C105 WC +X.G80 H-bonds[2]: "N1-O2'(hydroxyl)[3.24],N3-N2(amino)[3.19]" -X.C105 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.72],O2'(hydroxyl)-O2(carbonyl)[2.74]" 21 type=II A|C-G X.A342|X.C362,X.G366 WC -X.C362 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.76],N3-O2'(hydroxyl)[2.87]" +X.G366 H-bonds[0]: "" 22 type=I A|U-A X.A343|X.U361,X.A376 WC -X.U361 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.42]" +X.A376 H-bonds[1]: "N1-O2'(hydroxyl)[3.24]" 23 type=X A|U-A X.A389|X.U79,X.A106 WC +X.U79 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.57],N7*O2(carbonyl)[3.16]" -X.A106 H-bonds[0]: "" 24 type=I A|C-G X.A436|X.C431,X.G457 WC +X.C431 H-bonds[1]: "N1-O2'(hydroxyl)[3.45]" -X.G457 H-bonds[1]: "N3-N2(amino)[3.13]" 25 type=II A|C-G X.A478|X.C186,X.G217 WC -X.C186 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.88],N3-O2'(hydroxyl)[3.02]" +X.G217 H-bonds[0]: "" 26 type=I A|C-G X.A489|X.C1239,X.G1283 WC -X.C1239 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.63]" +X.G1283 H-bonds[2]: "N1-O2'(hydroxyl)[3.06],N3-N2(amino)[2.77]" 27 type=X A|G-C X.A495|X.G35,X.C491 WC +X.G35 H-bonds[0]: "" -X.C491 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.74],N3-O2'(hydroxyl)[2.60]" 28 type=I A|G-C X.A512|X.G727,X.C840 WC -X.G727 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.57],N3-N2(amino)[3.50]" +X.C840 H-bonds[1]: "N1-O2'(hydroxyl)[2.87]" 29 type=II A|C-G X.A559|X.C624,X.G1297 WC -X.C624 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.52],N3-O2'(hydroxyl)[2.95]" +X.G1297 H-bonds[0]: "" 30 type=I A|C-G X.A560|X.C623,X.G1298 WC -X.C623 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.93],O2'(hydroxyl)-O2(carbonyl)[3.11]" +X.G1298 H-bonds[2]: "N1-O2'(hydroxyl)[2.77],N3-N2(amino)[3.33]" 31 type=I A|C-G X.A571|X.C2070,X.G2652 WC -X.C2070 H-bonds[3]: "O3'-O2'(hydroxyl)[2.86],O2'(hydroxyl)-O2'(hydroxyl)[2.98],O2'(hydroxyl)-O2(carbonyl)[2.51]" +X.G2652 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.33],N1-O2'(hydroxyl)[2.54],N3-N2(amino)[3.23]" 32 type=X A|A-U X.A577|X.A2047,X.U2061 WC -X.A2047 H-bonds[1]: "N6(amino)-N3[2.85]" +X.U2061 H-bonds[0]: "" 33 type=I A|C-G X.A629|X.C716,X.G854 WC -X.C716 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.63],O2'(hydroxyl)-O2(carbonyl)[2.81]" +X.G854 H-bonds[2]: "N1-O2'(hydroxyl)[2.73],N3-N2(amino)[2.88]" 34 type=II A|C-G X.A651|X.C241,X.G262 WC -X.C241 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.80],N3-O2'(hydroxyl)[2.72]" +X.G262 H-bonds[0]: "" 35 type=I A|C-G X.A652|X.C240,X.G263 WC -X.C240 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.79],O2'(hydroxyl)-O2(carbonyl)[3.23]" +X.G263 H-bonds[2]: "N1-O2'(hydroxyl)[3.33],N3-N2(amino)[3.54]" 36 type=X A|A-U X.A658|X.A38,X.U487 WC -X.A38 H-bonds[0]: "" +X.U487 H-bonds[1]: "N6(amino)-O2(carbonyl)[3.21]" 37 type=X A|C-G X.A658|X.C39,X.G486 WC -X.C39 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.06],N1-O2'(hydroxyl)[2.42]" +X.G486 H-bonds[0]: "" 38 type=X A|U-G X.A676|X.U2428,X.G2442 Wobble +X.U2428 H-bonds[0]: "" -X.G2442 H-bonds[2]: "N1-N2(amino)[3.28],N3-O2'(hydroxyl)[2.40]" 39 type=X A|U-A X.A688|X.U2375,X.A2396 WC +X.U2375 H-bonds[0]: "" -X.A2396 H-bonds[2]: "N6(amino)-N3[2.75],N1-O2'(hydroxyl)[2.70]" 40 type=X A|G-C X.A689|X.G2376,X.C2395 WC +X.G2376 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.30],N6(amino)-N3[3.56]" -X.C2395 H-bonds[0]: "" 41 type=X A|G-C X.A691|X.G2376,X.C2395 WC +X.G2376 H-bonds[0]: "" -X.C2395 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.59]" 42 type=II A|G-C X.A720|X.G2094,X.C2470 WC +X.G2094 H-bonds[0]: "" -X.C2470 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.15],N3-O2'(hydroxyl)[2.72]" 43 type=X A|G-C X.A730|X.G823,X.C831 WC +X.G823 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.06],N6(amino)-N3[3.02],N1-N2(amino)[3.28]" -X.C831 H-bonds[0]: "" 44 type=X A|C-G X.A794|X.C789,X.G798 WC +X.C789 H-bonds[0]: "" -X.G798 H-bonds[2]: "N6(amino)-N3[3.23],N1-O2'(hydroxyl)[2.71]" 45 type=I A|G-C X.A819|X.G822,X.C832 WC -X.G822 H-bonds[2]: "O3'-O2'(hydroxyl)[3.53],N3-N2(amino)[3.37]" +X.C832 H-bonds[1]: "N1-O2'(hydroxyl)[2.97]" 46 type=I A|G-C X.A826|X.G1803,X.C1815 WC +X.G1803 H-bonds[2]: "N1-O2'(hydroxyl)[2.81],N3-N2(amino)[2.86]" -X.C1815 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.82],O2'(hydroxyl)-O2(carbonyl)[2.77]" 47 type=I A|C-G X.A864|X.C882,X.G986 WC -X.C882 H-bonds[2]: "O3'-O2'(hydroxyl)[3.00],O2'(hydroxyl)-O2'(hydroxyl)[3.04]" +X.G986 H-bonds[1]: "N3-N2(amino)[2.94]" 48 type=X A|G-C X.A911|X.G909,X.C957 WC +X.G909 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.37],N6(amino)-N3[2.82]" -X.C957 H-bonds[0]: "" 49 type=I A|C-G X.A956|X.C2290,X.G2304 WC -X.C2290 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.31]" +X.G2304 H-bonds[1]: "N1-O2'(hydroxyl)[2.55]" 50 type=II A|U-G X.A1003|X.U2484,X.G2521 Wobble -X.U2484 H-bonds[3]: "O2'(hydroxyl)-O3'[2.87],O2'(hydroxyl)-O2'(hydroxyl)[2.67],N3-O2'(hydroxyl)[2.84]" +X.G2521 H-bonds[0]: "" 51 type=I A|C-G X.A1004|X.C2483,X.G2522 WC -X.C2483 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.01],O2'(hydroxyl)-O2(carbonyl)[3.29]" +X.G2522 H-bonds[2]: "N1-O2'(hydroxyl)[2.91],N3-N2(amino)[3.09]" 52 type=II A|U-A X.A1024|X.U2053,X.A2064 WC +X.U2053 H-bonds[0]: "" -X.A2064 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.57],N3-O2'(hydroxyl)[2.86]" 53 type=I A|G-C X.A1025|X.G2054,X.C2063 WC +X.G2054 H-bonds[2]: "N1-O2'(hydroxyl)[2.67],N3-N2(amino)[3.40]" -X.C2063 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.34]" 54 type=X A|G-C X.A1027|X.G990,X.C1015 WC +X.G990 H-bonds[0]: "" -X.C1015 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.90],N3-O2'(hydroxyl)[2.44]" 55 type=X A|A-U X.A1027|X.A991,X.U1014 WC +X.A991 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.27]" -X.U1014 H-bonds[0]: "" 56 type=II A|G-C X.A1044|X.G1020,X.C1031 WC +X.G1020 H-bonds[0]: "" -X.C1031 H-bonds[3]: "O2'(hydroxyl)-O3'[3.06],O2'(hydroxyl)-O2'(hydroxyl)[2.71],N3-O2'(hydroxyl)[2.57]" 57 type=I A|G-C X.A1045|X.G1021,X.C1030 WC +X.G1021 H-bonds[2]: "N1-O2'(hydroxyl)[2.79],N3-N2(amino)[3.10]" -X.C1030 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.83],O2'(hydroxyl)-O2(carbonyl)[3.23]" 58 type=II A|G-C X.A1053|X.G1046,X.C1197 WC +X.G1046 H-bonds[0]: "" -X.C1197 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.92],N3-O2'(hydroxyl)[2.53]" 59 type=I A|G-C X.A1054|X.G1047,X.C1196 WC +X.G1047 H-bonds[2]: "N1-O2'(hydroxyl)[2.80],N3-N2(amino)[3.28]" -X.C1196 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.91],O2'(hydroxyl)-O2(carbonyl)[2.75]" 60 type=II A|C-G X.A1072|X.C2491,X.G2513 WC +X.C2491 H-bonds[0]: "" -X.G2513 H-bonds[2]: "O2'(hydroxyl)-O3'[3.24],N3-O2'(hydroxyl)[2.36]" 61 type=I A|C-G X.A1073|X.C2492,X.G2512 WC +X.C2492 H-bonds[1]: "N1-O2'(hydroxyl)[3.10]" -X.G2512 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.50],N3-N2(amino)[3.17]" 62 type=X A|U-A X.A1171|X.U2489,X.A2515 WC -X.U2489 H-bonds[0]: "" +X.A2515 H-bonds[2]: "N7-O2'(hydroxyl)[2.88],N6(amino)-N3[2.94]" 63 type=X A|C-G X.A1171|X.C2490,X.G2514 WC -X.C2490 H-bonds[2]: "N6(amino)-O2(carbonyl)[2.92],N1-O2'(hydroxyl)[2.94]" +X.G2514 H-bonds[0]: "" 64 type=X A|G-C X.A1172|X.G2543,X.C2595 WC -X.G2543 H-bonds[3]: "O4'-O2'(hydroxyl)[2.79],N1-N2(amino)[3.46],N3-O2'(hydroxyl)[2.67]" +X.C2595 H-bonds[0]: "" 65 type=I A|C-G X.A1173|X.C2542,X.G2596 WC -X.C2542 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.69],O2'(hydroxyl)-O2(carbonyl)[2.59]" +X.G2596 H-bonds[2]: "N1-O2'(hydroxyl)[2.78],N3-N2(amino)[3.21]" 66 type=X A|C-G X.A1177|X.C2052,X.G2065 WC +X.C2052 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[2.97],N6(amino)-O2(carbonyl)[3.16]" -X.G2065 H-bonds[1]: "N1-N2(amino)[3.52]" 67 type=II A|G-C X.A1252|X.G30,X.C555 WC -X.G30 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.67],N3-O2'(hydroxyl)[2.64]" +X.C555 H-bonds[0]: "" 68 type=X A|C-G X.A1258|X.C587,X.G594 WC +X.C587 H-bonds[0]: "" -X.G594 H-bonds[2]: "N1-N2(amino)[2.99],N3-O2'(hydroxyl)[2.84]" 69 type=II A|U-A X.A1263|X.U858,X.A1233 WC -X.U858 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.72],N3-O2'(hydroxyl)[2.75]" +X.A1233 H-bonds[0]: "" 70 type=I A|C-G X.A1264|X.C857,X.G1234 WC -X.C857 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.55]" +X.G1234 H-bonds[2]: "N1-O2'(hydroxyl)[2.72],N3-N2(amino)[2.76]" 71 type=I A|C-G X.A1291|X.C607,X.G620 WC +X.C607 H-bonds[1]: "N1-O2'(hydroxyl)[2.61]" -X.G620 H-bonds[2]: "O3'-O2'(hydroxyl)[3.49],N3-N2(amino)[3.43]" 72 type=I A|C-G X.A1292|X.C717,X.G853 WC +X.C717 H-bonds[0]: "" -X.G853 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.05],N3-N2(amino)[3.38]" 73 type=X A|C-G X.A1312|X.C1332,X.G1689 WC +X.C1332 H-bonds[1]: "N1-O2'(hydroxyl)[2.57]" -X.G1689 H-bonds[3]: "O3'-O2'(hydroxyl)[2.97],O2'(hydroxyl)-N3[3.57],N3-N2(amino)[3.56]" 74 type=X A|C-G X.A1324|X.C1692,X.G2036 WC -X.C1692 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.07],N1-O2'(hydroxyl)[2.91]" +X.G2036 H-bonds[0]: "" 75 type=X A|G-C X.A1359|X.G1356,X.C1370 WC +X.G1356 H-bonds[0]: "" -X.C1370 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.23],N1-O2'(hydroxyl)[2.58]" 76 type=II A|U-A X.A1390|X.U738,X.A814 WC -X.U738 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.80],N3-O2'(hydroxyl)[2.85]" +X.A814 H-bonds[0]: "" 77 type=X A|C-G X.A1391|X.C737,X.G815 WC -X.C737 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.82],O2'(hydroxyl)-O2(carbonyl)[2.88]" +X.G815 H-bonds[1]: "N1-O2'(hydroxyl)[3.31]" 78 type=X A|G-C X.A1402|X.G190,X.C212 WC -X.G190 H-bonds[2]: "N1-N2(amino)[3.51],N3-O2'(hydroxyl)[3.40]" +X.C212 H-bonds[0]: "" 79 type=I A|G-C X.A1421|X.G1380,X.C1441 WC +X.G1380 H-bonds[2]: "N1-O2'(hydroxyl)[2.88],N3-N2(amino)[3.05]" -X.C1441 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.90],O2'(hydroxyl)-O2(carbonyl)[2.57]" 80 type=I A|C-G X.A1430|X.C1351,X.G1375 WC -X.C1351 H-bonds[0]: "" +X.G1375 H-bonds[1]: "N1-O2'(hydroxyl)[2.71]" 81 type=X A|A-U X.A1513|X.A1422,X.U1439 WC -X.A1422 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.87]" +X.U1439 H-bonds[1]: "N1-O2'(hydroxyl)[3.14]" 82 type=X A|C-G X.A1616|X.C1388,X.G1417 WC -X.C1388 H-bonds[0]: "" +X.G1417 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.45]" 83 type=X A|C-G X.A1617|X.C1388,X.G1417 WC -X.C1388 H-bonds[0]: "" +X.G1417 H-bonds[1]: "N1-N2(amino)[2.81]" 84 type=II A|C-G X.A1618|X.C1388,X.G1417 WC -X.C1388 H-bonds[3]: "O2'(hydroxyl)-O3'[2.93],O2'(hydroxyl)-O2'(hydroxyl)[2.72],N3-O2'(hydroxyl)[2.83]" +X.G1417 H-bonds[0]: "" 85 type=I A|C-G X.A1619|X.C1387,X.G1418 WC -X.C1387 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.43]" +X.G1418 H-bonds[1]: "N3-N2(amino)[3.03]" 86 type=I A|G-C X.A1654|X.G1347,X.C1648 WC -X.G1347 H-bonds[1]: "N3-N2(amino)[3.35]" +X.C1648 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.06],N1-O2'(hydroxyl)[2.66]" 87 type=X A|G-C X.A1660|X.G1361,X.C1367 WC +X.G1361 H-bonds[1]: "N6(amino)-N3[3.16]" -X.C1367 H-bonds[0]: "" 88 type=II A|G-C X.A1676|X.G745,X.C777 WC -X.G745 H-bonds[3]: "O2'(hydroxyl)-O3'[3.07],O2'(hydroxyl)-O2'(hydroxyl)[2.93],N3-O2'(hydroxyl)[2.64]" +X.C777 H-bonds[0]: "" 89 type=X A|G-C X.A1721|X.G1718,X.C2017 WC +X.G1718 H-bonds[1]: "N1-N2(amino)[2.76]" -X.C2017 H-bonds[0]: "" 90 type=X A|G-C X.A1782|X.G2721,X.C2742 WC +X.G2721 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.17],N6(amino)-N3[3.31],N1-N2(amino)[3.54]" -X.C2742 H-bonds[0]: "" 91 type=X A|U-A X.A1786|X.U2723,X.A2738 WC -X.U2723 H-bonds[1]: "N7-O2'(hydroxyl)[2.66]" +X.A2738 H-bonds[0]: "" 92 type=II A|U-U X.A1787|X.U1674,X.U1680 -- +X.U1674 H-bonds[0]: "" -X.U1680 H-bonds[3]: "O2'(hydroxyl)-O3'[3.09],O2'(hydroxyl)-O2'(hydroxyl)[2.70],N3-O2'(hydroxyl)[2.82]" 93 type=I A|G-C X.A1812|X.G2615,X.C2633 WC +X.G2615 H-bonds[2]: "N1-O2'(hydroxyl)[2.92],N3-N2(amino)[3.44]" -X.C2633 H-bonds[0]: "" 94 type=II A|U-A X.A1829|X.U1825,X.A1848 WC -X.U1825 H-bonds[3]: "O2'(hydroxyl)-O3'[3.10],O2'(hydroxyl)-O2'(hydroxyl)[2.62],N3-O2'(hydroxyl)[3.01]" +X.A1848 H-bonds[0]: "" 95 type=I A|C-G X.A1830|X.C1824,X.G1849 WC -X.C1824 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.29]" +X.G1849 H-bonds[1]: "N1-O2'(hydroxyl)[2.59]" 96 type=X A|C-G X.A1836|X.C1400,X.G1405 WC -X.C1400 H-bonds[1]: "N3-O2'(hydroxyl)[3.10]" +X.G1405 H-bonds[0]: "" 97 type=I A|C-G X.A1837|X.C1399,X.G1406 WC -X.C1399 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.18],O2'(hydroxyl)-O2(carbonyl)[2.95]" +X.G1406 H-bonds[2]: "N1-O2'(hydroxyl)[3.05],N3-N2(amino)[3.27]" 98 type=II A|U-A X.A1880|X.U2113,X.A2260 WC +X.U2113 H-bonds[0]: "" -X.A2260 H-bonds[3]: "O2'(hydroxyl)-O3'[2.96],O2'(hydroxyl)-O2'(hydroxyl)[2.47],N3-O2'(hydroxyl)[2.63]" 99 type=I A|G-C X.A1881|X.G2114,X.C2259 WC +X.G2114 H-bonds[2]: "N1-O2'(hydroxyl)[2.94],N3-N2(amino)[3.22]" -X.C2259 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.83]" 100 type=X A|C-A X.A1916|X.C2112,X.A2261 -- -X.C2112 H-bonds[0]: "" +X.A2261 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.52]" 101 type=X A|U-A X.A1916|X.U2113,X.A2260 WC -X.U2113 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.03],N3-O2'(hydroxyl)[2.74]" +X.A2260 H-bonds[0]: "" 102 type=I A|C-A X.A1917|X.C2112,X.A2261 -- -X.C2112 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.24]" +X.A2261 H-bonds[1]: "N1-O2'(hydroxyl)[2.61]" 103 type=I A|G-C X.A1927|X.G1820,X.C1853 WC +X.G1820 H-bonds[1]: "N1-O2'(hydroxyl)[2.43]" -X.C1853 H-bonds[0]: "" 104 type=X A|C-G X.A1955|X.C1864,X.G1930 WC -X.C1864 H-bonds[2]: "O2'(hydroxyl)-O4'[3.16],N3-O2'(hydroxyl)[2.52]" +X.G1930 H-bonds[0]: "" 105 type=X A|C-G X.A1964|X.C1961,X.G1991 WC -X.C1961 H-bonds[0]: "" +X.G1991 H-bonds[1]: "N1-N2(amino)[3.12]" 106 type=X A|A-U X.A1965|X.A2616,X.U2632 WC +X.A2616 H-bonds[0]: "" -X.U2632 H-bonds[1]: "N3-O2'(hydroxyl)[2.92]" 107 type=II A|G-C X.A1979|X.G2575,X.C2587 WC +X.G2575 H-bonds[0]: "" -X.C2587 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.77],N3-O2'(hydroxyl)[2.49]" 108 type=I A|G-C X.A1980|X.G2576,X.C2586 WC +X.G2576 H-bonds[2]: "N1-O2'(hydroxyl)[2.88],N3-N2(amino)[3.46]" -X.C2586 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.02],O2'(hydroxyl)-O2(carbonyl)[2.78]" 109 type=X A|G-C X.A1993|X.G2619,X.C2628 WC -X.G2619 H-bonds[1]: "N3-O2'(hydroxyl)[2.75]" +X.C2628 H-bonds[0]: "" 110 type=I A|C-G X.A1996|X.C1860,X.G1999 WC +X.C1860 H-bonds[1]: "N1-O2'(hydroxyl)[2.82]" -X.G1999 H-bonds[4]: "O3'-O2'(hydroxyl)[3.02],O2'(hydroxyl)-O2'(hydroxyl)[2.93],O2'(hydroxyl)-N3[2.81],N3-N2(amino)[3.01]" 111 type=X A|G-U X.A1997|X.G1819,X.U1854 Wobble +X.G1819 H-bonds[0]: "" -X.U1854 H-bonds[2]: "O2'(hydroxyl)-O4'[3.31],N3-O2'(hydroxyl)[2.75]" 112 type=II A|G-C X.A2008|X.G783,X.C803 WC +X.G783 H-bonds[1]: "N1-N2(amino)[3.26]" -X.C803 H-bonds[1]: "N3-O2'(hydroxyl)[2.66]" 113 type=X A|G-C X.A2058|X.G2482,X.C2523 WC -X.G2482 H-bonds[2]: "O2'(hydroxyl)-O4'[2.85],N3-O2'(hydroxyl)[2.65]" +X.C2523 H-bonds[0]: "" 114 type=X A|C-U X.A2087|X.C718,X.U852 -- +X.C718 H-bonds[0]: "" -X.U852 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.28],N1-O2'(hydroxyl)[2.73]" 115 type=II A|G-C X.A2300|X.G997,X.C1008 WC +X.G997 H-bonds[1]: "N1-N2(amino)[3.10]" -X.C1008 H-bonds[3]: "O2'(hydroxyl)-O3'[2.83],O2'(hydroxyl)-O2'(hydroxyl)[2.58],N3-O2'(hydroxyl)[2.50]" 116 type=X A|G-U X.A2301|X.G998,X.U1007 Wobble +X.G998 H-bonds[2]: "N1-O2'(hydroxyl)[2.65],N3-N2(amino)[3.30]" -X.U1007 H-bonds[0]: "" 117 type=X A|U-A X.A2315|X.U2311,X.A2411 WC +X.U2311 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.18],N1-O2'(hydroxyl)[3.00]" -X.A2411 H-bonds[0]: "" 118 type=I A|C-G X.A2354|X.C2288,X.G2306 WC +X.C2288 H-bonds[1]: "N1-O2'(hydroxyl)[3.24]" -X.G2306 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.05],N3-N2(amino)[2.99]" 119 type=I A|U-G X.A2363|X.U2351,X.G2358 Wobble -X.U2351 H-bonds[0]: "" +X.G2358 H-bonds[2]: "N1-O2'(hydroxyl)[2.31],N3-N2(amino)[3.28]" 120 type=I A|C-G X.A2415|X.C2287,X.G2307 WC -X.C2287 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.92]" +X.G2307 H-bonds[2]: "N1-O2'(hydroxyl)[2.86],N3-N2(amino)[2.98]" 121 type=I A|A-U X.A2461|X.A2104,X.U2270 WC -X.A2104 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.72],O2'(hydroxyl)-N3[3.19]" +X.U2270 H-bonds[1]: "N1-O2'(hydroxyl)[3.02]" 122 type=X A|C-G X.A2558|X.C2685,X.G2690 WC -X.C2685 H-bonds[1]: "N3-O2'(hydroxyl)[2.37]" +X.G2690 H-bonds[0]: "" 123 type=II A|C-G X.A2591|X.C2548,X.G2571 WC -X.C2548 H-bonds[3]: "O2'(hydroxyl)-O3'[3.14],O2'(hydroxyl)-O2'(hydroxyl)[2.75],N3-O2'(hydroxyl)[2.67]" +X.G2571 H-bonds[0]: "" 124 type=I A|C-G X.A2592|X.C2547,X.G2572 WC -X.C2547 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.86],O2'(hydroxyl)-O2(carbonyl)[3.14]" +X.G2572 H-bonds[2]: "N1-O2'(hydroxyl)[2.61],N3-N2(amino)[3.21]" 125 type=X A|C-U X.A2599|X.C2479,X.U2531 -- -X.C2479 H-bonds[0]: "" +X.U2531 H-bonds[1]: "N1-O2'(hydroxyl)[2.72]" 126 type=X A|A-C X.A2599|X.A2480,X.C2526 ~Wobble -X.A2480 H-bonds[1]: "O4'-O2'(hydroxyl)[3.09]" +X.C2526 H-bonds[0]: "" 127 type=I A|C-G X.A2625|X.C2100,X.G2463 WC -X.C2100 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.81]" +X.G2463 H-bonds[2]: "N1-O2'(hydroxyl)[2.82],N3-N2(amino)[3.17]" 128 type=X A|U-A X.A2629|X.U2620,X.A2627 WC -X.U2620 H-bonds[1]: "N6(amino)-O2(carbonyl)[2.85]" +X.A2627 H-bonds[0]: "" 129 type=II A|G-C X.A2767|X.G2550,X.C2567 WC +X.G2550 H-bonds[0]: "" -X.C2567 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.99],N3-O2'(hydroxyl)[2.64]" 130 type=I A|G-C X.A2768|X.G2551,X.C2566 WC +X.G2551 H-bonds[2]: "N1-O2'(hydroxyl)[3.09],N3-N2(amino)[3.21]" -X.C2566 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.70],O2'(hydroxyl)-O2(carbonyl)[3.13]" 131 type=X A|G-C X.A2791|X.G2550,X.C2567 WC -X.G2550 H-bonds[4]: "O3'-O2'(hydroxyl)[2.97],O2'(hydroxyl)-O2'(hydroxyl)[2.68],O2'(hydroxyl)-N3[3.09],N3-N2(amino)[2.90]" +X.C2567 H-bonds[0]: "" 132 type=II A|G-C X.A2829|X.G2657,X.C2815 WC +X.G2657 H-bonds[0]: "" -X.C2815 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.91],N3-O2'(hydroxyl)[2.88]" 133 type=I A|G-C X.A2830|X.G2658,X.C2814 WC +X.G2658 H-bonds[2]: "N1-O2'(hydroxyl)[2.71],N3-N2(amino)[2.93]" -X.C2814 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.61]" 134 type=X A|C-G X.A2843|X.C2074,X.G2648 WC -X.C2074 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.17],N1-O2'(hydroxyl)[3.02]" +X.G2648 H-bonds[1]: "N6(amino)*N2(amino)[3.35]" 135 type=I A|C-G X.A2880|X.C1752,X.G1777 WC -X.C1752 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.79]" +X.G1777 H-bonds[1]: "N1-O2'(hydroxyl)[2.91]" 136 type=I A|C-G X.A2903|X.C2836,X.G2850 WC -X.C2836 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.49],O2'(hydroxyl)-O2(carbonyl)[2.67]" +X.G2850 H-bonds[2]: "N1-O2'(hydroxyl)[3.03],N3-N2(amino)[3.16]" 137 type=I A|G-C X.A2911|X.G2657,X.C2815 WC -X.G2657 H-bonds[4]: "O3'-O2'(hydroxyl)[2.97],O2'(hydroxyl)-O2'(hydroxyl)[2.92],O2'(hydroxyl)-N3[2.88],N3-N2(amino)[2.90]" +X.C2815 H-bonds[0]: "" 138 type=X A|G-G Y.A25|Y.G22,Y.G58 -- +Y.G22 H-bonds[1]: "N6(amino)-N3[3.18]" -Y.G58 H-bonds[0]: "" 139 type=X A|C-G Y.A51|Y.C29,Y.G49 WC -Y.C29 H-bonds[2]: "N6(amino)-O2(carbonyl)[2.65],N1-O2'(hydroxyl)[2.64]" +Y.G49 H-bonds[1]: "N6(amino)*N2(amino)[3.34]" 140 type=X A|A-U Y.A55|Y.A27,Y.U53 WC -Y.A27 H-bonds[0]: "" +Y.U53 H-bonds[2]: "N7-O2'(hydroxyl)[3.14],N6(amino)-O2(carbonyl)[3.23]" 141 type=X A|C-G Y.A55|Y.C28,Y.G52 WC -Y.C28 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.43],N1-O2'(hydroxyl)[2.89]" +Y.G52 H-bonds[0]: "" 142 type=X A|A-U Y.A56|Y.A27,Y.U53 WC -Y.A27 H-bonds[2]: "N6(amino)-N3[3.11],N1-O2'(hydroxyl)[3.20]" +Y.U53 H-bonds[0]: "" **************************************************************************** List of 43 ribose zippers 1 nts=4 UGAG X.U29,X.G30,X.A1252,X.G1253 2 nts=4 CCAA X.C114,X.C115,X.A125,X.A126 3 nts=4 AUCC X.A140,X.U141,X.C1444,X.C1445 4 nts=4 ACAC X.A185,X.C186,X.A478,X.C479 5 nts=4 AACC X.A193,X.A194,X.C723,X.C724 6 nts=4 AGAU X.A222,X.G223,X.A236,X.U237 7 nts=4 CCAA X.C240,X.C241,X.A651,X.A652 8 nts=4 AAAA X.A265,X.A266,X.A475,X.A476 9 nts=4 AACC X.A274,X.A275,X.C413,X.C414 10 nts=4 AAUC X.A342,X.A343,X.U361,X.C362 11 nts=4 GAGU X.G511,X.A512,X.G727,X.U728 12 nts=4 AACC X.A559,X.A560,X.C623,X.C624 13 nts=4 CAUG X.C572,X.A2805,X.U2806,X.G2807 14 nts=4 AACC X.A720,X.A721,X.C2469,X.C2470 15 nts=4 CUAA X.C737,X.U738,X.A1390,X.A1391 16 nts=4 AGAG X.A744,X.G745,X.A1676,X.G1677 17 nts=4 CUAA X.C857,X.U858,X.A1263,X.A1264 18 nts=4 GACC X.G863,X.A864,X.C882,X.C883 19 nts=4 AGAG X.A906,X.G907,Y.A76,Y.G77 20 nts=4 AACC X.A955,X.A956,X.C2290,X.C2291 21 nts=4 AGAG X.A985,X.G986,X.A1228,X.G1229 22 nts=4 AACU X.A1003,X.A1004,X.C2483,X.U2484 23 nts=4 CCUA X.C1008,X.C1009,X.U2299,X.A2300 24 nts=4 AACA X.A1024,X.A1025,X.C2063,X.A2064 25 nts=4 CCAA X.C1030,X.C1031,X.A1044,X.A1045 26 nts=4 AACC X.A1053,X.A1054,X.C1196,X.C1197 27 nts=4 AAGG X.A1072,X.A1073,X.G2512,X.G2513 28 nts=6 CCUAAA X.C1387,X.C1388,X.U1389,X.A1617,X.A1618,X.A1619 29 nts=4 CCAA X.C1399,X.C1400,X.A1836,X.A1837 30 nts=4 ACUA X.A1422,X.C1423,X.U1512,X.A1513 31 nts=4 UAGG X.U1707,X.A1708,X.G2712,X.G2713 32 nts=4 CUGA X.C1752,X.U1753,X.G2879,X.A2880 33 nts=4 CAGG X.C1809,X.A1810,X.G2634,X.G2635 34 nts=4 CUAA X.C1824,X.U1825,X.A1829,X.A1830 35 nts=4 AACA X.A1880,X.A1881,X.C2259,X.A2260 36 nts=4 AACU X.A1916,X.A1917,X.C2112,X.U2113 37 nts=4 AACC X.A1979,X.A1980,X.C2586,X.C2587 38 nts=4 CUGA X.C2100,X.U2101,X.G2624,X.A2625 39 nts=4 ACAA X.A2104,X.C2105,X.A2460,X.A2461 40 nts=4 CCAA X.C2547,X.C2548,X.A2591,X.A2592 41 nts=4 CCAA X.C2566,X.C2567,X.A2767,X.A2768 42 nts=4 GGGA X.G2657,X.G2658,X.G2910,X.A2911 43 nts=4 CCAA X.C2814,X.C2815,X.A2829,X.A2830 **************************************************************************** List of 4 possible kink turns 1 Normal k-turn; iloop#57; between stems [#13,#12]; bending-angle=47 C#13[CG X.C97,X.G85] [GA X.G101,X.A84] NC#12[CG X.C104,X.G81] strand1 nts=15; AGCUUUGAUCCAGAG X.A95,X.G96,X.C97,X.U98,X.U99,X.U100,X.G101,X.A102,X.U103,X.C104,X.C105,X.A106,X.G107,X.A108,X.G109 strand2 nts=12; CUUUGGGGAGCU X.C76,X.U77,X.U78,X.U79,X.G80,X.G81,X.G82,X.G83,X.A84,X.G85,X.C86,X.U87 2 Normal k-turn; iloop#59; between stems [#75,#76]; bending-angle=46 C#75[CG X.C1246,X.G1276] [GA X.G1250,X.A1275] NC#76[GU X.G1253,X.U1272] strand1 nts=13; GCGUUGAAGCAUG X.G1245,X.C1246,X.G1247,X.U1248,X.U1249,X.G1250,X.A1251,X.A1252,X.G1253,X.C1254,X.A1255,X.U1256,X.G1257 strand2 nts=10; CAUGUGGAGC X.C1268,X.A1269,X.U1270,X.G1271,X.U1272,X.G1273,X.G1274,X.A1275,X.G1276,X.C1277 3 Undecided case [A-G]; iloop#16; between stems [#-32,#88]; bending-angle=43 C#-32[AU X.A1390,X.U1416] [AG X.A1391,X.G1414] NC#88[GC X.G1392,X.C1413] strand1 nts=5; AAGCU X.A1390,X.A1391,X.G1392,X.C1393,X.U1394 strand2 nts=6; GGCGAU X.G1411,X.G1412,X.C1413,X.G1414,X.A1415,X.U1416 4 Undecided case; iloop#69; between stems [#110,#109]; bending-angle=75 C#110[UA X.U1840,X.A1831] [GA X.G1841,X.A1830] NC#109[AU X.A1848,X.U1825] strand1 nts=17; GGUGAUGUAUAGGGGCU X.G1838,X.G1839,X.U1840,X.G1841,X.A1842,X.U1843,X.G1844,X.U1845,X.A1846,X.U1847,X.A1848,X.G1849,X.G1850,X.G1851,X.G1852,X.C1853,X.U1854 strand2 nts=15; GGUCUCUGCUAAACC X.G1819,X.G1820,X.U1821,X.C1822,X.U1823,X.C1824,X.U1825,X.G1826,X.C1827,X.U1828,X.A1829,X.A1830,X.A1831,X.C1832,X.C1833 **************************************************************************** List of 390 splayed-apart dinucleotides 1 X.G45 X.C46 angle=106 distance=15.5 ratio=0.80 2 X.A49 X.U50 angle=128 distance=17.1 ratio=0.90 3 X.U50 X.G51 angle=111 distance=15.9 ratio=0.83 4 X.A71 X.U72 angle=114 distance=16.8 ratio=0.84 5 X.U72 X.A73 angle=121 distance=16.3 ratio=0.87 6 X.U74 X.G75 angle=94 distance=15.5 ratio=0.73 7 X.U87 X.G88 angle=151 distance=17.4 ratio=0.97 8 X.U99 X.U100 angle=159 distance=18.8 ratio=0.98 9 X.U100 X.G101 angle=109 distance=16.1 ratio=0.82 10 X.U112 X.U113 angle=101 distance=12.9 ratio=0.77 11 X.U119 X.G120 angle=150 distance=17.3 ratio=0.97 12 X.G123 X.A124 angle=112 distance=15.3 ratio=0.83 13 X.A124 X.A125 angle=165 distance=18.8 ratio=0.99 14 X.A126 X.C127 angle=88 distance=14.6 ratio=0.69 15 X.U149 X.A150 angle=124 distance=15.8 ratio=0.88 16 X.C175 X.A176 angle=130 distance=17.4 ratio=0.91 17 X.A176 X.G177 angle=152 distance=17.6 ratio=0.97 18 X.A183 X.C184 angle=144 distance=18.7 ratio=0.95 19 X.C184 X.A185 angle=154 distance=18.5 ratio=0.97 20 X.A198 X.A199 angle=122 distance=16.3 ratio=0.88 21 X.A199 X.A200 angle=115 distance=15.8 ratio=0.84 22 X.A202 X.U203 angle=86 distance=13.6 ratio=0.68 23 X.A225 X.A226 angle=136 distance=19.6 ratio=0.93 24 X.A226 X.G227 angle=143 distance=18.5 ratio=0.95 25 X.A231 X.U232 angle=88 distance=12.6 ratio=0.70 26 X.U232 X.U233 angle=102 distance=14.8 ratio=0.78 27 X.G235 X.A236 angle=155 distance=17.9 ratio=0.98 28 X.G251 X.C252 angle=126 distance=19.0 ratio=0.89 29 X.C252 X.G253 angle=97 distance=15.6 ratio=0.75 30 X.G267 X.A268 angle=132 distance=15.0 ratio=0.91 31 X.C284 X.U285 angle=92 distance=13.4 ratio=0.72 32 X.U286 X.G287 angle=110 distance=16.0 ratio=0.82 33 X.G300 X.U301 angle=112 distance=16.9 ratio=0.83 34 X.U301 X.A302 angle=108 distance=16.9 ratio=0.81 35 X.G319 X.U320 angle=103 distance=13.2 ratio=0.79 36 X.U320 X.U321 angle=143 distance=17.1 ratio=0.95 37 X.U321 X.A322 angle=141 distance=14.5 ratio=0.95 38 X.A324 X.A325 angle=93 distance=12.7 ratio=0.73 39 X.A343 X.U344 angle=91 distance=14.4 ratio=0.71 40 X.G350 X.G351 angle=109 distance=13.8 ratio=0.81 41 X.A363 X.A364 angle=156 distance=19.0 ratio=0.98 42 X.G366 X.A367 angle=104 distance=17.1 ratio=0.79 43 X.U371 X.A372 angle=122 distance=15.3 ratio=0.88 44 X.U374 X.A375 angle=103 distance=15.8 ratio=0.78 45 X.A375 X.A376 angle=91 distance=13.0 ratio=0.72 46 X.U377 X.C378 angle=110 distance=14.3 ratio=0.82 47 X.C431 X.G432 angle=132 distance=17.5 ratio=0.91 48 X.G432 X.U433 angle=140 distance=18.2 ratio=0.94 49 X.C450 X.U451 angle=154 distance=19.2 ratio=0.97 50 X.U451 X.G452 angle=142 distance=18.3 ratio=0.95 51 X.G456 X.G457 angle=153 distance=18.8 ratio=0.97 52 X.G457 X.A458 angle=138 distance=17.6 ratio=0.93 53 X.A469 X.G470 angle=97 distance=15.3 ratio=0.75 54 X.G488 X.A489 angle=162 distance=18.8 ratio=0.99 55 X.A489 X.C490 angle=148 distance=20.0 ratio=0.96 56 X.A493 X.U494 angle=165 distance=18.6 ratio=0.99 57 X.U494 X.A495 angle=119 distance=16.4 ratio=0.86 58 X.A499 X.A500 angle=118 distance=16.5 ratio=0.86 59 X.C501 X.C502 angle=158 distance=18.3 ratio=0.98 60 X.C502 X.A503 angle=164 distance=17.7 ratio=0.99 61 X.G515 X.A516 angle=87 distance=13.3 ratio=0.69 62 X.A518 X.G519 angle=111 distance=14.3 ratio=0.82 63 X.G520 X.U521 angle=152 distance=18.4 ratio=0.97 64 X.C528 X.A529 angle=96 distance=13.8 ratio=0.74 65 X.A548 X.U549 angle=166 distance=17.3 ratio=0.99 66 X.U549 X.A550 angle=114 distance=18.3 ratio=0.84 67 X.A552 X.A553 angle=147 distance=17.5 ratio=0.96 68 X.A553 X.C554 angle=119 distance=17.1 ratio=0.86 69 X.C554 X.C555 angle=133 distance=17.2 ratio=0.92 70 X.A571 X.C572 angle=125 distance=17.8 ratio=0.89 71 X.G575 X.U576 angle=102 distance=16.5 ratio=0.78 72 X.A577 X.G578 angle=87 distance=13.1 ratio=0.69 73 X.U589 X.U590 angle=113 distance=15.0 ratio=0.84 74 X.U590 X.A591 angle=135 distance=18.6 ratio=0.92 75 X.A592 X.U593 angle=91 distance=13.9 ratio=0.72 76 X.U593 X.G594 angle=134 distance=18.7 ratio=0.92 77 X.G604 X.U605 angle=117 distance=15.1 ratio=0.85 78 X.U605 X.G606 angle=97 distance=15.8 ratio=0.75 79 X.A617 X.A618 angle=140 distance=18.0 ratio=0.94 80 X.A621 X.A622 angle=127 distance=16.7 ratio=0.90 81 X.G630 X.U631 angle=86 distance=12.8 ratio=0.68 82 X.U657 X.A658 angle=114 distance=15.8 ratio=0.84 83 X.A658 X.A659 angle=136 distance=17.6 ratio=0.93 84 X.A659 X.A660 angle=108 distance=12.4 ratio=0.81 85 X.U671 X.A672 angle=103 distance=12.9 ratio=0.78 86 X.G687 X.A688 angle=87 distance=12.0 ratio=0.69 87 X.U698 X.U699 angle=103 distance=16.5 ratio=0.78 88 X.A715 X.C716 angle=118 distance=17.3 ratio=0.86 89 X.A730 X.U731 angle=137 distance=18.6 ratio=0.93 90 X.U731 X.C732 angle=100 distance=15.6 ratio=0.77 91 X.C743 X.A744 angle=120 distance=16.6 ratio=0.86 92 X.G773 X.G774 angle=135 distance=16.0 ratio=0.93 93 X.G774 X.A775 angle=139 distance=17.0 ratio=0.94 94 X.U791 X.U792 angle=152 distance=18.9 ratio=0.97 95 X.U792 X.G793 angle=127 distance=17.5 ratio=0.90 96 X.A795 X.A796 angle=127 distance=16.1 ratio=0.90 97 X.A796 X.A797 angle=102 distance=13.9 ratio=0.78 98 X.A806 X.U807 angle=132 distance=17.1 ratio=0.91 99 X.G808 X.A809 angle=133 distance=18.7 ratio=0.92 100 X.A809 X.A810 angle=167 distance=19.3 ratio=0.99 101 X.G820 X.C821 angle=168 distance=18.2 ratio=0.99 102 X.C821 X.G822 angle=126 distance=16.8 ratio=0.89 103 X.G825 X.A826 angle=155 distance=18.5 ratio=0.98 104 X.A826 X.A827 angle=128 distance=16.3 ratio=0.90 105 X.C832 X.A833 angle=129 distance=16.6 ratio=0.90 106 X.A833 X.A834 angle=113 distance=16.1 ratio=0.83 107 X.A834 X.U835 angle=86 distance=14.3 ratio=0.68 108 X.U835 X.C836 angle=134 distance=19.1 ratio=0.92 109 X.C836 X.G837 angle=127 distance=17.8 ratio=0.89 110 X.A838 X.A839 angle=125 distance=17.4 ratio=0.89 111 X.A845 X.G846 angle=120 distance=16.7 ratio=0.87 112 X.G846 X.A847 angle=153 distance=18.1 ratio=0.97 113 X.A849 X.G850 angle=120 distance=18.3 ratio=0.87 114 X.G850 X.C851 angle=114 distance=16.4 ratio=0.84 115 X.U855 X.U856 angle=106 distance=14.6 ratio=0.80 116 X.U856 X.C857 angle=88 distance=14.7 ratio=0.69 117 X.A866 X.U867 angle=104 distance=15.9 ratio=0.79 118 X.U871 X.U872 angle=135 distance=17.8 ratio=0.92 119 X.A874 X.G875 angle=164 distance=18.5 ratio=0.99 120 X.G875 X.G876 angle=124 distance=17.0 ratio=0.88 121 X.A954 X.A955 angle=114 distance=17.2 ratio=0.84 122 X.A956 X.C957 angle=104 distance=16.4 ratio=0.79 123 X.A969 X.U970 angle=160 distance=19.2 ratio=0.99 124 X.U970 X.U971 angle=161 distance=19.3 ratio=0.99 125 X.C988 X.A989 angle=150 distance=20.3 ratio=0.97 126 X.A989 X.G990 angle=92 distance=15.3 ratio=0.72 127 X.A1001 X.U1002 angle=128 distance=17.1 ratio=0.90 128 X.U1002 X.A1003 angle=162 distance=20.1 ratio=0.99 129 X.A1004 X.G1005 angle=112 distance=17.4 ratio=0.83 130 X.G1005 X.G1006 angle=158 distance=19.7 ratio=0.98 131 X.A1023 X.A1024 angle=110 distance=13.9 ratio=0.82 132 X.C1026 X.A1027 angle=111 distance=17.3 ratio=0.83 133 X.A1034 X.C1035 angle=145 distance=17.5 ratio=0.95 134 X.C1038 X.C1039 angle=127 distance=17.7 ratio=0.89 135 X.C1039 X.A1040 angle=168 distance=18.6 ratio=0.99 136 X.U1048 X.C1049 angle=154 distance=17.4 ratio=0.97 137 X.A1055 X.U1056 angle=103 distance=16.6 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156 X.A1285 X.G1286 angle=118 distance=16.1 ratio=0.86 157 X.G1286 X.U1287 angle=141 distance=19.2 ratio=0.94 158 X.G1288 X.A1289 angle=108 distance=15.0 ratio=0.81 159 X.A1289 X.G1290 angle=126 distance=16.9 ratio=0.89 160 X.A1291 X.A1292 angle=113 distance=16.6 ratio=0.83 161 X.A1292 X.U1293 angle=145 distance=18.1 ratio=0.95 162 X.U1293 X.G1294 angle=155 distance=18.7 ratio=0.98 163 X.C1308 X.G1309 angle=107 distance=15.4 ratio=0.80 164 X.G1309 X.A1310 angle=100 distance=15.6 ratio=0.77 165 X.A1311 X.A1312 angle=124 distance=17.6 ratio=0.88 166 X.A1323 X.A1324 angle=96 distance=14.2 ratio=0.74 167 X.U1325 X.C1326 angle=105 distance=15.6 ratio=0.80 168 X.G1336 X.A1337 angle=141 distance=19.5 ratio=0.94 169 X.U1339 X.G1340 angle=125 distance=16.1 ratio=0.89 170 X.G1361 X.C1362 angle=124 distance=18.7 ratio=0.88 171 X.C1362 X.U1363 angle=119 distance=16.1 ratio=0.86 172 X.G1365 X.U1366 angle=116 distance=15.8 ratio=0.85 173 X.U1366 X.C1367 angle=100 distance=14.7 ratio=0.77 174 X.G1369 X.C1370 angle=90 distance=13.4 ratio=0.71 175 X.U1377 X.U1378 angle=124 distance=16.4 ratio=0.89 176 X.U1378 X.A1379 angle=101 distance=15.1 ratio=0.77 177 X.A1379 X.G1380 angle=105 distance=14.2 ratio=0.79 178 X.U1381 X.C1382 angle=101 distance=14.6 ratio=0.77 179 X.U1386 X.C1387 angle=88 distance=14.0 ratio=0.70 180 X.G1395 X.A1396 angle=113 distance=15.6 ratio=0.84 181 X.A1432 X.U1433 angle=132 distance=19.1 ratio=0.91 182 X.U1433 X.U1434 angle=87 distance=14.2 ratio=0.69 183 X.U1434 X.C1435 angle=90 distance=13.4 ratio=0.71 184 X.G1453 X.U1454 angle=168 distance=20.1 ratio=0.99 185 X.A1463 X.U1464 angle=85 distance=13.2 ratio=0.68 186 X.U1464 X.G1465 angle=112 distance=14.7 ratio=0.83 187 X.C1472 X.G1473 angle=124 distance=17.1 ratio=0.88 188 X.A1488 X.A1489 angle=132 distance=12.0 ratio=0.92 189 X.A1489 X.G1490 angle=90 distance=12.0 ratio=0.73 190 X.A1497 X.U1498 angle=116 distance=16.4 ratio=0.85 191 X.A1502 X.U1503 angle=155 distance=20.9 ratio=0.98 192 X.U1503 X.U1504 angle=119 distance=15.6 ratio=0.86 193 X.G1509 X.U1510 angle=112 distance=17.0 ratio=0.83 194 X.U1540 X.C1541 angle=106 distance=14.9 ratio=0.80 195 X.C1541 X.C1542 angle=96 distance=15.3 ratio=0.74 196 X.U1568 X.G1569 angle=170 distance=16.8 ratio=1.00 197 X.G1569 X.G1570 angle=110 distance=15.7 ratio=0.82 198 X.U1594 X.C1595 angle=92 distance=13.8 ratio=0.72 199 X.U1602 X.U1603 angle=106 distance=15.0 ratio=0.80 200 X.G1613 X.A1614 angle=95 distance=13.9 ratio=0.74 201 X.G1615 X.A1616 angle=168 distance=20.4 ratio=0.99 202 X.U1629 X.A1630 angle=91 distance=12.3 ratio=0.71 203 X.G1641 X.C1642 angle=89 distance=12.7 ratio=0.70 204 X.U1646 X.A1647 angle=131 distance=17.4 ratio=0.91 205 X.G1650 X.C1651 angle=130 distance=17.8 ratio=0.91 206 X.A1652 X.A1653 angle=105 distance=16.8 ratio=0.79 207 X.A1654 X.C1655 angle=106 distance=15.7 ratio=0.80 208 X.G1657 X.A1658 angle=98 distance=12.7 ratio=0.76 209 X.C1659 X.A1660 angle=113 distance=16.1 ratio=0.83 210 X.A1660 X.C1661 angle=142 distance=19.0 ratio=0.94 211 X.C1661 X.A1662 angle=105 distance=14.6 ratio=0.79 212 X.A1662 X.G1663 angle=125 distance=16.1 ratio=0.89 213 X.A1670 X.A1671 angle=93 distance=13.0 ratio=0.72 214 X.G1677 X.A1678 angle=103 distance=15.2 ratio=0.78 215 X.A1678 X.A1679 angle=136 distance=17.5 ratio=0.93 216 X.A1690 X.G1691 angle=109 distance=15.8 ratio=0.81 217 X.G1691 X.C1692 angle=101 distance=16.8 ratio=0.77 218 X.G1697 X.A1698 angle=96 distance=15.6 ratio=0.74 219 X.G1717 X.G1718 angle=103 distance=15.0 ratio=0.78 220 X.G1725 X.A1726 angle=106 distance=15.0 ratio=0.80 221 X.U1736 X.U1737 angle=113 distance=15.3 ratio=0.84 222 X.U1737 X.C1738 angle=95 distance=14.5 ratio=0.74 223 X.A1742 X.G1743 angle=117 distance=16.9 ratio=0.85 224 X.G1743 X.A1744 angle=119 distance=18.1 ratio=0.86 225 X.U1750 X.G1751 angle=118 distance=16.3 ratio=0.86 226 X.A1782 X.G1783 angle=89 distance=11.3 ratio=0.71 227 X.G1783 X.U1784 angle=159 distance=20.1 ratio=0.98 228 X.U1784 X.G1785 angle=161 distance=16.4 ratio=0.99 229 X.G1785 X.A1786 angle=88 distance=13.2 ratio=0.70 230 X.A1789 X.G1790 angle=106 distance=17.0 ratio=0.80 231 X.U1806 X.A1807 angle=144 distance=19.7 ratio=0.95 232 X.U1808 X.C1809 angle=125 distance=16.8 ratio=0.89 233 X.A1812 X.A1813 angle=94 distance=14.1 ratio=0.73 234 X.A1813 X.A1814 angle=115 distance=15.2 ratio=0.85 235 X.C1827 X.U1828 angle=128 distance=17.7 ratio=0.90 236 X.U1828 X.A1829 angle=166 distance=18.9 ratio=0.99 237 X.U1835 X.A1836 angle=142 distance=13.9 ratio=0.94 238 X.A1842 X.U1843 angle=87 distance=13.2 ratio=0.69 239 X.U1843 X.G1844 angle=111 distance=15.5 ratio=0.83 240 X.A1846 X.U1847 angle=160 distance=18.1 ratio=0.98 241 X.U1847 X.A1848 angle=111 distance=15.8 ratio=0.82 242 X.G1855 X.A1856 angle=134 distance=17.4 ratio=0.92 243 X.U1861 X.G1862 angle=110 distance=14.1 ratio=0.82 244 X.A1926 X.A1927 angle=173 distance=20.2 ratio=1.00 245 X.A1927 X.A1928 angle=146 distance=20.4 ratio=0.96 246 X.C1932 X.G1933 angle=111 distance=16.3 ratio=0.82 247 X.U1953 X.A1954 angle=100 distance=12.1 ratio=0.77 248 X.G1956 X.G1957 angle=99 distance=15.3 ratio=0.76 249 X.A1964 X.A1965 angle=108 distance=17.2 ratio=0.81 250 X.A1965 X.U1966 angle=99 distance=15.4 ratio=0.76 251 X.U1970 X.U1971 angle=118 distance=16.9 ratio=0.86 252 X.U1971 X.G1972 angle=146 distance=17.4 ratio=0.96 253 X.U1978 X.A1979 angle=86 distance=12.5 ratio=0.68 254 X.G1981 X.U1982 angle=113 distance=18.0 ratio=0.83 255 X.U1982 X.U1983 angle=116 distance=16.3 ratio=0.85 256 X.C1989 X.C1990 angle=109 distance=17.0 ratio=0.81 257 X.C1990 X.G1991 angle=160 distance=17.6 ratio=0.98 258 X.G1991 X.C1992 angle=150 distance=19.0 ratio=0.97 259 X.A1993 X.C1994 angle=159 distance=19.4 ratio=0.98 260 X.A1997 X.A1998 angle=140 distance=20.2 ratio=0.94 261 X.A1998 X.G1999 angle=133 distance=19.3 ratio=0.92 262 X.G2007 X.A2008 angle=151 distance=16.6 ratio=0.97 263 X.A2008 X.U2009 angle=143 distance=17.1 ratio=0.95 264 X.U2018 X.G2019 angle=108 distance=14.0 ratio=0.81 265 X.C2044 X.A2045 angle=132 distance=17.5 ratio=0.91 266 X.A2047 X.G2048 angle=89 distance=11.9 ratio=0.70 267 X.G2048 X.U2049 angle=92 distance=14.3 ratio=0.72 268 X.U2049 X.A2050 angle=158 distance=18.9 ratio=0.98 269 X.G2056 X.A2057 angle=92 distance=14.9 ratio=0.73 270 X.A2058 X.G2059 angle=121 distance=16.4 ratio=0.87 271 X.G2059 X.A2060 angle=157 distance=18.7 ratio=0.98 272 X.G2062 X.C2063 angle=108 distance=15.7 ratio=0.81 273 X.A2069 X.C2070 angle=125 distance=16.1 ratio=0.89 274 X.A2081 X.C2082 angle=137 distance=19.2 ratio=0.93 275 X.C2082 X.G2083 angle=143 distance=18.0 ratio=0.95 276 X.A2086 X.A2087 angle=111 distance=17.5 ratio=0.83 277 X.A2087 X.G2088 angle=125 distance=18.3 ratio=0.89 278 X.A2089 X.C2090 angle=88 distance=13.5 ratio=0.69 279 X.G2094 X.U2095 angle=120 distance=18.3 ratio=0.87 280 X.U2095 X.G2096 angle=141 distance=19.1 ratio=0.94 281 X.U2102 X.U2103 angle=99 distance=13.6 ratio=0.76 282 X.U2103 X.A2104 angle=150 distance=16.6 ratio=0.97 283 X.A2225 X.A2226 angle=86 distance=12.2 ratio=0.69 284 X.C2229 X.G2230 angle=139 distance=18.7 ratio=0.94 285 X.G2230 X.C2231 angle=160 distance=19.1 ratio=0.98 286 X.A2239 X.U2240 angle=163 distance=18.5 ratio=0.99 287 X.U2240 X.C2241 angle=136 distance=17.9 ratio=0.93 288 X.G2264 X.G2265 angle=87 distance=12.4 ratio=0.69 289 X.U2272 X.G2273 angle=158 distance=18.7 ratio=0.98 290 X.U2276 X.G2277 angle=163 distance=17.2 ratio=0.99 291 X.G2277 X.G2278 angle=158 distance=18.3 ratio=0.98 292 X.C2285 X.G2286 angle=103 distance=15.4 ratio=0.78 293 X.A2294 X.A2295 angle=157 distance=17.1 ratio=0.98 294 X.A2295 X.A2296 angle=131 distance=15.5 ratio=0.91 295 X.A2301 X.C2302 angle=129 distance=17.6 ratio=0.90 296 X.C2302 X.G2303 angle=131 distance=19.0 ratio=0.91 297 X.G2309 X.C2310 angle=108 distance=17.2 ratio=0.81 298 X.A2315 X.G2316 angle=119 distance=16.5 ratio=0.86 299 X.A2345 X.U2346 angle=99 distance=14.1 ratio=0.76 300 X.U2351 X.G2352 angle=121 distance=15.4 ratio=0.87 301 X.A2360 X.U2361 angle=131 distance=18.1 ratio=0.91 302 X.U2361 X.A2362 angle=92 distance=15.4 ratio=0.72 303 X.A2363 X.G2364 angle=102 distance=14.4 ratio=0.78 304 X.U2371 X.G2372 angle=131 distance=18.5 ratio=0.91 305 X.G2372 X.A2373 angle=158 distance=19.7 ratio=0.98 306 X.A2373 X.C2374 angle=149 distance=20.1 ratio=0.96 307 X.U2384 X.A2385 angle=110 distance=14.8 ratio=0.82 308 X.G2409 X.G2410 angle=149 distance=19.9 ratio=0.96 309 X.A2411 X.C2412 angle=95 distance=15.6 ratio=0.74 310 X.G2416 X.U2417 angle=106 distance=15.1 ratio=0.80 311 X.U2429 X.C2430 angle=93 distance=12.9 ratio=0.73 312 X.G2432 X.C2433 angle=120 distance=16.7 ratio=0.87 313 X.C2433 X.A2434 angle=156 distance=17.5 ratio=0.98 314 X.C2449 X.U2450 angle=132 distance=19.4 ratio=0.91 315 X.U2450 X.C2451 angle=130 distance=19.3 ratio=0.90 316 X.C2451 X.A2452 angle=105 distance=15.9 ratio=0.80 317 X.A2452 X.A2453 angle=159 distance=17.7 ratio=0.98 318 X.A2453 X.C2454 angle=119 distance=16.9 ratio=0.86 319 X.C2454 X.G2455 angle=133 distance=17.5 ratio=0.92 320 X.G2456 X.A2457 angle=171 distance=18.5 ratio=1.00 321 X.U2465 X.A2466 angle=175 distance=16.8 ratio=1.00 322 X.A2466 X.C2467 angle=129 distance=17.4 ratio=0.90 323 X.G2474 X.A2475 angle=133 distance=18.3 ratio=0.92 324 X.G2499 X.U2500 angle=95 distance=12.9 ratio=0.74 325 X.C2502 X.A2503 angle=103 distance=15.5 ratio=0.78 326 X.C2504 X.A2505 angle=126 distance=16.6 ratio=0.89 327 X.C2528 X.G2529 angle=149 distance=18.9 ratio=0.96 328 X.G2529 X.A2530 angle=110 distance=14.9 ratio=0.83 329 X.A2530 X.U2531 angle=107 distance=15.1 ratio=0.80 330 X.U2531 X.G2532 angle=111 distance=16.0 ratio=0.83 331 X.U2533 X.C2534 angle=87 distance=13.1 ratio=0.69 332 X.A2545 X.U2546 angle=118 distance=16.9 ratio=0.86 333 X.U2555 X.G2556 angle=131 distance=15.8 ratio=0.91 334 X.G2556 X.U2557 angle=102 distance=16.8 ratio=0.78 335 X.U2557 X.A2558 angle=121 distance=15.6 ratio=0.87 336 X.U2573 X.U2574 angle=131 distance=17.2 ratio=0.91 337 X.A2593 X.G2594 angle=113 distance=17.2 ratio=0.83 338 X.U2598 X.A2599 angle=146 distance=17.2 ratio=0.96 339 X.A2599 X.C2600 angle=146 distance=17.7 ratio=0.96 340 X.C2600 X.G2601 angle=136 distance=16.7 ratio=0.93 341 X.C2602 X.G2603 angle=123 distance=13.5 ratio=0.88 342 X.G2603 X.A2604 angle=126 distance=15.1 ratio=0.89 343 X.A2604 X.G2605 angle=119 distance=17.4 ratio=0.86 344 X.U2612 X.C2613 angle=100 distance=14.2 ratio=0.76 345 X.G2622 X.U2623 angle=88 distance=12.5 ratio=0.69 346 X.G2635 X.U2636 angle=117 distance=16.7 ratio=0.85 347 X.U2636 X.C2637 angle=133 distance=18.1 ratio=0.92 348 X.C2637 X.C2638 angle=86 distance=13.0 ratio=0.68 349 X.C2639 X.U2640 angle=116 distance=16.4 ratio=0.85 350 X.U2640 X.A2641 angle=128 distance=17.5 ratio=0.90 351 X.U2655 X.A2656 angle=128 distance=18.4 ratio=0.90 352 X.A2656 X.G2657 angle=129 distance=17.5 ratio=0.90 353 X.G2672 X.C2673 angle=138 distance=17.5 ratio=0.93 354 X.G2715 X.U2716 angle=136 distance=18.1 ratio=0.93 355 X.U2716 X.A2717 angle=145 distance=18.2 ratio=0.95 356 X.A2717 X.C2718 angle=142 distance=18.0 ratio=0.95 357 X.U2728 X.G2729 angle=94 distance=12.6 ratio=0.73 358 X.A2738 X.U2739 angle=115 distance=15.0 ratio=0.84 359 X.A2740 X.G2741 angle=99 distance=14.8 ratio=0.76 360 X.G2759 X.A2760 angle=115 distance=16.6 ratio=0.84 361 X.A2777 X.G2778 angle=133 distance=15.4 ratio=0.92 362 X.U2781 X.C2782 angle=121 distance=16.2 ratio=0.87 363 X.C2782 X.U2783 angle=107 distance=14.4 ratio=0.80 364 X.A2803 X.G2804 angle=160 distance=16.9 ratio=0.99 365 X.G2804 X.A2805 angle=125 distance=18.5 ratio=0.89 366 X.A2805 X.U2806 angle=151 distance=19.7 ratio=0.97 367 X.U2806 X.G2807 angle=141 distance=17.3 ratio=0.94 368 X.G2807 X.A2808 angle=108 distance=15.8 ratio=0.81 369 X.A2808 X.G2809 angle=147 distance=16.8 ratio=0.96 370 X.A2840 X.A2841 angle=86 distance=13.2 ratio=0.68 371 X.G2842 X.A2843 angle=119 distance=14.9 ratio=0.86 372 X.G2851 X.U2852 angle=101 distance=14.1 ratio=0.77 373 X.U2852 X.U2853 angle=148 distance=17.9 ratio=0.96 374 X.U2853 X.A2854 angle=122 distance=16.8 ratio=0.88 375 X.G2869 X.A2870 angle=97 distance=14.2 ratio=0.75 376 X.G2886 X.G2887 angle=92 distance=14.6 ratio=0.72 377 X.U2891 X.G2892 angle=90 distance=13.6 ratio=0.71 378 X.A2893 X.C2894 angle=97 distance=14.5 ratio=0.75 379 X.A2903 X.U2904 angle=164 distance=18.0 ratio=0.99 380 X.G2913 X.A2914 angle=124 distance=16.4 ratio=0.88 381 Y.C9 Y.U10 angle=127 distance=17.1 ratio=0.90 382 Y.U10 Y.A11 angle=101 distance=14.8 ratio=0.77 383 Y.A11 Y.U12 angle=149 distance=18.0 ratio=0.96 384 Y.A13 Y.G14 angle=110 distance=15.5 ratio=0.82 385 Y.U23 Y.C24 angle=103 distance=13.9 ratio=0.78 386 Y.U38 Y.G39 angle=140 distance=17.3 ratio=0.94 387 Y.C41 Y.G42 angle=111 distance=14.7 ratio=0.83 388 Y.C86 Y.G87 angle=113 distance=11.9 ratio=0.84 389 Y.G87 Y.U88 angle=117 distance=18.0 ratio=0.85 390 Y.G105 Y.U106 angle=115 distance=18.7 ratio=0.84 ---------------------------------------------------------------- Summary of 248 splayed-apart units 1 nts=2 GC X.G45,X.C46 2 nts=3 AUG X.A49,X.U50,X.G51 3 nts=3 AUA X.A71,X.U72,X.A73 4 nts=2 UG X.U74,X.G75 5 nts=2 UG X.U87,X.G88 6 nts=3 UUG X.U99,X.U100,X.G101 7 nts=2 UU X.U112,X.U113 8 nts=2 UG X.U119,X.G120 9 nts=3 GAA X.G123,X.A124,X.A125 10 nts=2 AC X.A126,X.C127 11 nts=2 UA X.U149,X.A150 12 nts=3 CAG X.C175,X.A176,X.G177 13 nts=3 ACA X.A183,X.C184,X.A185 14 nts=3 AAA X.A198,X.A199,X.A200 15 nts=2 AU X.A202,X.U203 16 nts=3 AAG X.A225,X.A226,X.G227 17 nts=3 AUU X.A231,X.U232,X.U233 18 nts=2 GA X.G235,X.A236 19 nts=3 GCG X.G251,X.C252,X.G253 20 nts=2 GA X.G267,X.A268 21 nts=2 CU X.C284,X.U285 22 nts=2 UG X.U286,X.G287 23 nts=3 GUA X.G300,X.U301,X.A302 24 nts=4 GUUA X.G319,X.U320,X.U321,X.A322 25 nts=2 AA X.A324,X.A325 26 nts=2 AU X.A343,X.U344 27 nts=2 GG X.G350,X.G351 28 nts=2 AA X.A363,X.A364 29 nts=2 GA X.G366,X.A367 30 nts=2 UA X.U371,X.A372 31 nts=3 UAA X.U374,X.A375,X.A376 32 nts=2 UC X.U377,X.C378 33 nts=3 CGU X.C431,X.G432,X.U433 34 nts=3 CUG X.C450,X.U451,X.G452 35 nts=3 GGA X.G456,X.G457,X.A458 36 nts=2 AG X.A469,X.G470 37 nts=3 GAC X.G488,X.A489,X.C490 38 nts=3 AUA X.A493,X.U494,X.A495 39 nts=2 AA X.A499,X.A500 40 nts=3 CCA X.C501,X.C502,X.A503 41 nts=2 GA X.G515,X.A516 42 nts=2 AG X.A518,X.G519 43 nts=2 GU X.G520,X.U521 44 nts=2 CA X.C528,X.A529 45 nts=3 AUA X.A548,X.U549,X.A550 46 nts=4 AACC X.A552,X.A553,X.C554,X.C555 47 nts=2 AC X.A571,X.C572 48 nts=2 GU X.G575,X.U576 49 nts=2 AG X.A577,X.G578 50 nts=3 UUA X.U589,X.U590,X.A591 51 nts=3 AUG X.A592,X.U593,X.G594 52 nts=3 GUG X.G604,X.U605,X.G606 53 nts=2 AA X.A617,X.A618 54 nts=2 AA X.A621,X.A622 55 nts=2 GU X.G630,X.U631 56 nts=4 UAAA X.U657,X.A658,X.A659,X.A660 57 nts=2 UA X.U671,X.A672 58 nts=2 GA X.G687,X.A688 59 nts=2 UU X.U698,X.U699 60 nts=2 AC X.A715,X.C716 61 nts=3 AUC X.A730,X.U731,X.C732 62 nts=2 CA X.C743,X.A744 63 nts=3 GGA X.G773,X.G774,X.A775 64 nts=3 UUG X.U791,X.U792,X.G793 65 nts=3 AAA X.A795,X.A796,X.A797 66 nts=2 AU X.A806,X.U807 67 nts=3 GAA X.G808,X.A809,X.A810 68 nts=3 GCG X.G820,X.C821,X.G822 69 nts=3 GAA X.G825,X.A826,X.A827 70 nts=6 CAAUCG X.C832,X.A833,X.A834,X.U835,X.C836,X.G837 71 nts=2 AA X.A838,X.A839 72 nts=3 AGA X.A845,X.G846,X.A847 73 nts=3 AGC X.A849,X.G850,X.C851 74 nts=3 UUC X.U855,X.U856,X.C857 75 nts=2 AU X.A866,X.U867 76 nts=2 UU X.U871,X.U872 77 nts=3 AGG X.A874,X.G875,X.G876 78 nts=2 AA X.A954,X.A955 79 nts=2 AC X.A956,X.C957 80 nts=3 AUU X.A969,X.U970,X.U971 81 nts=3 CAG X.C988,X.A989,X.G990 82 nts=3 AUA X.A1001,X.U1002,X.A1003 83 nts=3 AGG X.A1004,X.G1005,X.G1006 84 nts=2 AA X.A1023,X.A1024 85 nts=2 CA X.C1026,X.A1027 86 nts=2 AC X.A1034,X.C1035 87 nts=3 CCA X.C1038,X.C1039,X.A1040 88 nts=2 UC X.U1048,X.C1049 89 nts=3 AUA X.A1055,X.U1056,X.A1057 90 nts=3 AUG X.A1076,X.U1077,X.G1078 91 nts=3 CAG X.C1089,X.A1090,X.G1091 92 nts=2 AA X.A1170,X.A1171 93 nts=2 AU X.A1173,X.U1174 94 nts=3 ACC X.A1177,X.C1178,X.C1179 95 nts=3 AAA X.A1186,X.A1187,X.A1188 96 nts=3 AAG X.A1199,X.A1200,X.G1201 97 nts=2 UG X.U1224,X.G1225 98 nts=3 UUG X.U1248,X.U1249,X.G1250 99 nts=3 GAU X.G1257,X.A1258,X.U1259 100 nts=3 AGU X.A1285,X.G1286,X.U1287 101 nts=3 GAG X.G1288,X.A1289,X.G1290 102 nts=4 AAUG X.A1291,X.A1292,X.U1293,X.G1294 103 nts=3 CGA X.C1308,X.G1309,X.A1310 104 nts=2 AA X.A1311,X.A1312 105 nts=2 AA X.A1323,X.A1324 106 nts=2 UC X.U1325,X.C1326 107 nts=2 GA X.G1336,X.A1337 108 nts=2 UG X.U1339,X.G1340 109 nts=3 GCU X.G1361,X.C1362,X.U1363 110 nts=3 GUC X.G1365,X.U1366,X.C1367 111 nts=2 GC X.G1369,X.C1370 112 nts=4 UUAG X.U1377,X.U1378,X.A1379,X.G1380 113 nts=2 UC X.U1381,X.C1382 114 nts=2 UC X.U1386,X.C1387 115 nts=2 GA X.G1395,X.A1396 116 nts=4 AUUC X.A1432,X.U1433,X.U1434,X.C1435 117 nts=2 GU X.G1453,X.U1454 118 nts=3 AUG X.A1463,X.U1464,X.G1465 119 nts=2 CG X.C1472,X.G1473 120 nts=3 AAG X.A1488,X.A1489,X.G1490 121 nts=2 AU X.A1497,X.U1498 122 nts=3 AUU X.A1502,X.U1503,X.U1504 123 nts=2 GU X.G1509,X.U1510 124 nts=3 UCC X.U1540,X.C1541,X.C1542 125 nts=3 UGG X.U1568,X.G1569,X.G1570 126 nts=2 UC X.U1594,X.C1595 127 nts=2 UU X.U1602,X.U1603 128 nts=2 GA X.G1613,X.A1614 129 nts=2 GA X.G1615,X.A1616 130 nts=2 UA X.U1629,X.A1630 131 nts=2 GC X.G1641,X.C1642 132 nts=2 UA X.U1646,X.A1647 133 nts=2 GC X.G1650,X.C1651 134 nts=2 AA X.A1652,X.A1653 135 nts=2 AC X.A1654,X.C1655 136 nts=2 GA X.G1657,X.A1658 137 nts=5 CACAG X.C1659,X.A1660,X.C1661,X.A1662,X.G1663 138 nts=2 AA X.A1670,X.A1671 139 nts=3 GAA X.G1677,X.A1678,X.A1679 140 nts=3 AGC X.A1690,X.G1691,X.C1692 141 nts=2 GA X.G1697,X.A1698 142 nts=2 GG X.G1717,X.G1718 143 nts=2 GA X.G1725,X.A1726 144 nts=3 UUC X.U1736,X.U1737,X.C1738 145 nts=3 AGA X.A1742,X.G1743,X.A1744 146 nts=2 UG X.U1750,X.G1751 147 nts=5 AGUGA X.A1782,X.G1783,X.U1784,X.G1785,X.A1786 148 nts=2 AG X.A1789,X.G1790 149 nts=2 UA X.U1806,X.A1807 150 nts=2 UC X.U1808,X.C1809 151 nts=3 AAA X.A1812,X.A1813,X.A1814 152 nts=3 CUA X.C1827,X.U1828,X.A1829 153 nts=2 UA X.U1835,X.A1836 154 nts=3 AUG X.A1842,X.U1843,X.G1844 155 nts=3 AUA X.A1846,X.U1847,X.A1848 156 nts=2 GA X.G1855,X.A1856 157 nts=2 UG X.U1861,X.G1862 158 nts=3 AAA X.A1926,X.A1927,X.A1928 159 nts=2 CG X.C1932,X.G1933 160 nts=2 UA X.U1953,X.A1954 161 nts=2 GG X.G1956,X.G1957 162 nts=3 AAU X.A1964,X.A1965,X.U1966 163 nts=3 UUG X.U1970,X.U1971,X.G1972 164 nts=2 UA X.U1978,X.A1979 165 nts=3 GUU X.G1981,X.U1982,X.U1983 166 nts=4 CCGC X.C1989,X.C1990,X.G1991,X.C1992 167 nts=2 AC X.A1993,X.C1994 168 nts=3 AAG X.A1997,X.A1998,X.G1999 169 nts=3 GAU X.G2007,X.A2008,X.U2009 170 nts=2 UG X.U2018,X.G2019 171 nts=2 CA X.C2044,X.A2045 172 nts=4 AGUA X.A2047,X.G2048,X.U2049,X.A2050 173 nts=2 GA X.G2056,X.A2057 174 nts=3 AGA X.A2058,X.G2059,X.A2060 175 nts=2 GC X.G2062,X.C2063 176 nts=2 AC X.A2069,X.C2070 177 nts=3 ACG X.A2081,X.C2082,X.G2083 178 nts=3 AAG X.A2086,X.A2087,X.G2088 179 nts=2 AC X.A2089,X.C2090 180 nts=3 GUG X.G2094,X.U2095,X.G2096 181 nts=3 UUA X.U2102,X.U2103,X.A2104 182 nts=2 AA X.A2225,X.A2226 183 nts=3 CGC X.C2229,X.G2230,X.C2231 184 nts=3 AUC X.A2239,X.U2240,X.C2241 185 nts=2 GG X.G2264,X.G2265 186 nts=2 UG X.U2272,X.G2273 187 nts=3 UGG X.U2276,X.G2277,X.G2278 188 nts=2 CG X.C2285,X.G2286 189 nts=3 AAA X.A2294,X.A2295,X.A2296 190 nts=3 ACG X.A2301,X.C2302,X.G2303 191 nts=2 GC X.G2309,X.C2310 192 nts=2 AG X.A2315,X.G2316 193 nts=2 AU X.A2345,X.U2346 194 nts=2 UG X.U2351,X.G2352 195 nts=3 AUA X.A2360,X.U2361,X.A2362 196 nts=2 AG X.A2363,X.G2364 197 nts=4 UGAC X.U2371,X.G2372,X.A2373,X.C2374 198 nts=2 UA X.U2384,X.A2385 199 nts=2 GG X.G2409,X.G2410 200 nts=2 AC X.A2411,X.C2412 201 nts=2 GU X.G2416,X.U2417 202 nts=2 UC X.U2429,X.C2430 203 nts=3 GCA X.G2432,X.C2433,X.A2434 204 nts=7 CUCAACG X.C2449,X.U2450,X.C2451,X.A2452,X.A2453,X.C2454,X.G2455 205 nts=2 GA X.G2456,X.A2457 206 nts=3 UAC X.U2465,X.A2466,X.C2467 207 nts=2 GA X.G2474,X.A2475 208 nts=2 GU X.G2499,X.U2500 209 nts=2 CA X.C2502,X.A2503 210 nts=2 CA X.C2504,X.A2505 211 nts=5 CGAUG X.C2528,X.G2529,X.A2530,X.U2531,X.G2532 212 nts=2 UC X.U2533,X.C2534 213 nts=2 AU X.A2545,X.U2546 214 nts=4 UGUA X.U2555,X.G2556,X.U2557,X.A2558 215 nts=2 UU X.U2573,X.U2574 216 nts=2 AG X.A2593,X.G2594 217 nts=4 UACG X.U2598,X.A2599,X.C2600,X.G2601 218 nts=4 CGAG X.C2602,X.G2603,X.A2604,X.G2605 219 nts=2 UC X.U2612,X.C2613 220 nts=2 GU X.G2622,X.U2623 221 nts=4 GUCC X.G2635,X.U2636,X.C2637,X.C2638 222 nts=3 CUA X.C2639,X.U2640,X.A2641 223 nts=3 UAG X.U2655,X.A2656,X.G2657 224 nts=2 GC X.G2672,X.C2673 225 nts=4 GUAC X.G2715,X.U2716,X.A2717,X.C2718 226 nts=2 UG X.U2728,X.G2729 227 nts=2 AU X.A2738,X.U2739 228 nts=2 AG X.A2740,X.G2741 229 nts=2 GA X.G2759,X.A2760 230 nts=2 AG X.A2777,X.G2778 231 nts=3 UCU X.U2781,X.C2782,X.U2783 232 nts=7 AGAUGAG X.A2803,X.G2804,X.A2805,X.U2806,X.G2807,X.A2808,X.G2809 233 nts=2 AA X.A2840,X.A2841 234 nts=2 GA X.G2842,X.A2843 235 nts=4 GUUA X.G2851,X.U2852,X.U2853,X.A2854 236 nts=2 GA X.G2869,X.A2870 237 nts=2 GG X.G2886,X.G2887 238 nts=2 UG X.U2891,X.G2892 239 nts=2 AC X.A2893,X.C2894 240 nts=2 AU X.A2903,X.U2904 241 nts=2 GA X.G2913,X.A2914 242 nts=4 CUAU Y.C9,Y.U10,Y.A11,Y.U12 243 nts=2 AG Y.A13,Y.G14 244 nts=2 UC Y.U23,Y.C24 245 nts=2 UG Y.U38,Y.G39 246 nts=2 CG Y.C41,Y.G42 247 nts=3 CGU Y.C86,Y.G87,Y.U88 248 nts=2 GU Y.G105,Y.U106 **************************************************************************** This structure contains *4-order pseudoknot o You may want to run DSSR again with the '--nested' option which removes pseudoknots to get a fully nested secondary structure representation. **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >5hl7 nts=2819 [whole] AUUAAGUUAUUAAGGGCGCACGGUGGAUGCCUUGGCACUAGAAGCCAAUGAAGGACGUUACUAACGACGAUAUGCUUUGGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUAUGUCAUGUUAUCGAUAUGU&AUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAUUCGAUUCCCUUAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACACUCUAU&GAGUUACAAAGGACGACAUUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUGUUGUCUCUCUUGAGUGGAUCCUGAGUACGACGGAGCACGUGAAAUUCCGUCGGAAUCUGGGAGGACCAUCUCCUAAGGCUAAAUACUCUCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAACCUGAAACCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUUGAUGCAAGGUUAAGCAGUAAAUGUGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGUUUAGUAUUUGGUCGUAGACCCGAAACCAGGUGAUCUACCCUUGGUCAGGUUGAAGUUCAGG&CUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAACUGAGGGUAGCGGAGAAAUUCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGUGAUGAUUAUUGGAGGUAGAGCACUGUUUGGACGAGG&GUUACCGAAUUCAGACAAACUCCGAAUGCCAAUUAAUUUAACUUGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGCGUUGCCCAGACAACUAG&CUCACUAGUCGAGUGACACUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGGAUUGUCCU&UGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGUAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGGUGAGAAUCCCGUCCACCGAUUGACUAAGGUUUCCAGAGGAAGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCUA&CGU&AUCGAUGGGGGGACGCAGUAGGAUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAGCAGU&AGGC&GAGUA&AUCCGGUACUCGU&GGCUGAGCUGUGAUGGGGAGAAGA&GAGUCGUUGAUUUCACACUGCCGAGAAAAGCCUCUAGAUAGA&AUAGGUGCCCGUACCGCAAACCGACACAGGUAGUCAAGAUGAGAAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGGUGAUGUAUAGGGGCUGACGCCUGCCC&GUGCUGGAAGGUUAAGAGGAGUGGUUAGCU&GCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGG&CUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUCAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGUAGCCUGAUAUUGAAAUUCG&GGCUUUCUAACCCGCACCACUUAUCGUGGUGGGAGACAGUGUCAAGCGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCUCAAAGGUUCCCUCAGAAUGGUUG&AAAUCAUUCAUAGAGUGUAAAGGCAUAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGUCGAAAGACGGACUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGCCAACGGCAUAGCUGGGUAGCUAUGUGUGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAACUU&GGUUAUAAGAUCCCUCAAAGAUGAUGAGGUUAAUAGGUUCGAGGUGGAAGCAUGGUGACAUGUGGAGCUGACGAAUACUAAUCGAUCGAAGACUUAAU&UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGGUCUUUAGCGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC .((((((......((((((((((.....(((..((((((((.((((......((((((.[[..[[[)))...].((((((...(((]]..]].)))......))))))...)))....(((....)))(((((((......))))))).(((((((..&.........))))).)).))....(((((......(...[..).......)))).).........((....))...((((......((.]...)).....))))...(((....(((((.((....)).)))))....(..((((((((...&..............((((((.(((...(((((......)))))[[(...).(((.....]])))...)))...)))))).........)))))..)))......(((((((...[.......)))))))....).(((((].[[[[)))))..)))......))..)))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..[...))))..)))).<.(.(........).).((((((..(.(((((((.(((((..(((...(((.....)))...)))...((....))...(((.....)))......))))).)))))))..((.(...((((((.....((((((((((.((((...(((((..&.)))))...)<)))...(((.(((((.......A))))))))..).))))))))).(.(((....[)))...).]))))))......).))).((((((....(((((....)))))(((((((((...(((((((((.....(((...((((((((....(&....)....))))))))..)).).....)))).)))))..))))))).))..((((((((((......))))))))))....(((......)))...((((.(((...((([[....(.((((((.....(.....((..((((.(((((.....{.((..(&....)..))...))))).)))).))............]].)...))))))))))...)))))))(((((((.&.)))))))....))))))(.(((((((.((......(((((.((....))])))))...)).)))))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((.(.(((...(((....)))...)))..)))...(((((........)))))]]((((((&...&.((...((((....((((...((...(..............{...............(((.&..((&..(.(&......).)....&.))....)))..............&.......)....))...))))(..).....))))..))....&.)))))))))).))).....((......))..))).(((.......)))..))))..((((....((((((((.((..(....(.......(((((....(.[..).....)))))(((((.(...((....))....))))))(...).......(((((((((.>.((.........))...(((((((.....(((....))).......))))))).]((((..((.&(((((((..(((...((....((((...(.&)....))))....))...))))))))..))))...&........((..........(((((.......)))))..)..)....))))...)).))))))).)..))).)))))))).)))))).....)).[..(((((.....>].)))))..((((((((.(((.((......((((.((((((..(((((.((.((((((.((((..(.&)..))))....((..(((((.....))))).)).....)))))).))..)))))..(((......[)))((((((..........]))))))([((...(((((((.(.(((((....&....)))))...).((][.[[[))....)))))))...((((..(((...{..)))..)))).(((....))).))]]].].....(((((((.((..]]]]..))))))))).....)}......))))..))))))......(((((.(.((((((...((.......))...))))))...)))).).)......((((.((((((..(((((((((......))))))..))).(((((.....))))).....)))))..)...))).).....(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..(((((((.....(....)....))))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))((((..&.)))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))).&.(..(..(.....((((.((......((((((...(.....)...))))..)).....)).)).))........................................)..)..). >5hl7-X #1 nts=2705 0.00(3.55) [chain] RNA* AUUAAGUUAUUAAGGGCGCACGGUGGAUGCCUUGGCACUAGAAGCCAAUGAAGGACGUUACUAACGACGAUAUGCUUUGGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUAUGUCAUGUUAUCGAUAUGU&AUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAUUCGAUUCCCUUAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACACUCUAU&GAGUUACAAAGGACGACAUUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUGUUGUCUCUCUUGAGUGGAUCCUGAGUACGACGGAGCACGUGAAAUUCCGUCGGAAUCUGGGAGGACCAUCUCCUAAGGCUAAAUACUCUCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAACCUGAAACCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUUGAUGCAAGGUUAAGCAGUAAAUGUGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGUUUAGUAUUUGGUCGUAGACCCGAAACCAGGUGAUCUACCCUUGGUCAGGUUGAAGUUCAGG&CUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAACUGAGGGUAGCGGAGAAAUUCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGUGAUGAUUAUUGGAGGUAGAGCACUGUUUGGACGAGG&GUUACCGAAUUCAGACAAACUCCGAAUGCCAAUUAAUUUAACUUGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGCGUUGCCCAGACAACUAG&CUCACUAGUCGAGUGACACUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGGAUUGUCCU&UGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGUAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGGUGAGAAUCCCGUCCACCGAUUGACUAAGGUUUCCAGAGGAAGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCUA&CGU&AUCGAUGGGGGGACGCAGUAGGAUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAGCAGU&AGGC&GAGUA&AUCCGGUACUCGU&GGCUGAGCUGUGAUGGGGAGAAGA&GAGUCGUUGAUUUCACACUGCCGAGAAAAGCCUCUAGAUAGA&AUAGGUGCCCGUACCGCAAACCGACACAGGUAGUCAAGAUGAGAAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGGUGAUGUAUAGGGGCUGACGCCUGCCC&GUGCUGGAAGGUUAAGAGGAGUGGUUAGCU&GCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGG&CUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUCAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGUAGCCUGAUAUUGAAAUUCG&GGCUUUCUAACCCGCACCACUUAUCGUGGUGGGAGACAGUGUCAAGCGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCUCAAAGGUUCCCUCAGAAUGGUUG&AAAUCAUUCAUAGAGUGUAAAGGCAUAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGUCGAAAGACGGACUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGCCAACGGCAUAGCUGGGUAGCUAUGUGUGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAACUU&GGUUAUAAGAUCCCUCAAAGAUGAUGAGGUUAAUAGGUUCGAGGUGGAAGCAUGGUGACAUGUGGAGCUGACGAAUACUAAUCGAUCGAAGACUUAAU .((((((......((((((((((.....(((..((((((((.((((......((((((.[[..[[[)))...].((((((...(((]]..]].)))......))))))...)))....(((....)))(((((((......))))))).(((((((..&.........))))).)).))....(((((......(...[..).......)))).).........((....))...((((......((.]...)).....))))...(((....(((((.((....)).)))))....(..((((((((...&..............((((((.(((...(((((......)))))[[(...).(((.....]])))...)))...)))))).........)))))..)))......(((((((...[.......)))))))....).(((((].[[[[)))))..)))......))..)))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..[...))))..)))).<.(.(........).).((((((..(.(((((((.(((((..(((...(((.....)))...)))...((....))...(((.....)))......))))).)))))))..((.(...((((((.....((((((((((.((((...(((((..&.)))))...)<)))...(((.(((((.......A))))))))..).))))))))).(.(((....[)))...).]))))))......).))).((((((....(((((....)))))(((((((((...(((((((((.....(((...((((((((....(&....)....))))))))..)).).....)))).)))))..))))))).))..((((((((((......))))))))))....(((......)))...((((.(((...((([[....(.((((((.....(.....((..((((.(((((.....{.((..(&....)..))...))))).)))).))............]].)...))))))))))...)))))))(((((((.&.)))))))....))))))(.(((((((.((......(((((.((....))])))))...)).)))))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((.(.(((...(((....)))...)))..)))...(((((........)))))]]((((((&...&.((...((((....((((...((...(..............{...............(((.&..((&..(.(&......).)....&.))....)))..............&.......)....))...))))(..).....))))..))....&.)))))))))).))).....((......))..))).(((.......)))..))))..((((....((((((((.((..(....(.......(((((....(.[..).....)))))(((((.(...((....))....))))))(...).......(((((((((.>.((.........))...(((((((.....(((....))).......))))))).]((((..((.&(((((((..(((...((....((((...(.&)....))))....))...))))))))..))))...&........((..........(((((.......)))))..)..)....))))...)).))))))).)..))).)))))))).)))))).....)).[..(((((.....>].)))))..((((((((.(((.((......((((.((((((..(((((.((.((((((.((((..(.&)..))))....((..(((((.....))))).)).....)))))).))..)))))..(((......[)))((((((..........]))))))([((...(((((((.(.(((((....&....)))))...).((][.[[[))....)))))))...((((..(((...{..)))..)))).(((....))).))]]].].....(((((((.((..]]]]..))))))))).....)}......))))..))))))......(((((.(.((((((...((.......))...))))))...)))).).)......((((.((((((..(((((((((......))))))..))).(((((.....))))).....)))))..)...))).).....(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..(((((((.....(....)....))))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))((((..&.)))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))). >5hl7-Y #2 nts=114 0.01(3.11) [chain] RNA UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGGUCUUUAGCGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC .(..(..(.....((((.((......((((((...(.....)...))))..)).....)).)).))........................................)..)..). **************************************************************************** Summary of structural features of 2819 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 A . X.A2 0.021 anti,~C2'-endo,non-stack,ss-non-loop 2 U ( X.U3 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,phosphate 3 U ( X.U4 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 4 A ( X.A5 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 5 A ( X.A6 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 6 G ( X.G7 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 7 U ( X.U8 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 8 U . X.U9 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 9 A . X.A10 0.015 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 10 U . X.U11 0.025 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 11 U . X.U12 0.022 ~C3'-endo,non-stack,non-canonical,helix-end,multiplet,ss-non-loop 12 A . X.A13 0.029 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,ss-non-loop 13 A . X.A14 0.028 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor,phosphate 14 G ( X.G15 0.034 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 15 G ( X.G16 0.030 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 16 G ( X.G17 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 17 C ( X.C18 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 18 G ( X.G19 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 19 C ( X.C20 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 20 A ( X.A21 0.030 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 21 C ( X.C22 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 22 G ( X.G23 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 23 G ( X.G24 0.037 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 24 U . X.U25 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 25 G . X.G26 0.030 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 26 G . X.G27 0.028 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 27 A . X.A28 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 28 U . X.U29 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 29 G ( X.G30 0.035 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor,ribose-zipper 30 C ( X.C31 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 31 C ( X.C32 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 32 U . X.U33 0.014 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 33 U . X.U34 0.008 turn,anti,~C2'-endo,non-stack,non-canonical,multiplet,junction-loop 34 G ( X.G35 0.028 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 35 G ( X.G36 0.035 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 36 C ( X.C37 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 37 A ( X.A38 0.027 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 38 C ( X.C39 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 39 U ( X.U40 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 40 A ( X.A41 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 41 G ( X.G42 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 42 A . X.A43 0.016 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 43 A ( X.A44 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 44 G ( X.G45 0.014 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,splayed-apart 45 C ( X.C46 0.013 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 46 C ( X.C47 0.011 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor 47 A . X.A48 0.020 anti,~C3'-endo,non-pair-contact,junction-loop 48 A . X.A49 0.013 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart 49 U . X.U50 0.009 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 50 G . X.G51 0.014 anti,BII,non-stack,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart 51 A . X.A52 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,phosphate 52 A . X.A53 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 53 G ( X.G54 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 54 G ( X.G55 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 55 A ( X.A56 0.025 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,cap-donor,phosphate 56 C ( X.C57 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor 57 G ( X.G58 0.017 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 58 U ( X.U59 0.029 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,cap-donor 59 U . X.U60 0.009 anti,non-pair-contact,hairpin-loop,junction-loop,kissing-loop,phosphate 60 A [ X.A61 0.012 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,phosphate 61 C [ X.C62 0.012 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,internal-loop,kissing-loop 62 U . X.U63 0.014 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,internal-loop,kissing-loop 63 A . X.A64 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop 64 A [ X.A65 0.011 pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,kissing-loop,phosphate 65 C [ X.C66 0.011 pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 66 G [ X.G67 0.016 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 67 A ) X.A68 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 68 C ) X.C69 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor 69 G ) X.G70 0.032 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate 70 A . X.A71 0.008 turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,phosphate,splayed-apart 71 U . X.U72 0.019 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 72 A . X.A73 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,phosphate,splayed-apart 73 U ] X.U74 0.015 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 74 G . X.G75 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 75 C ( X.C76 0.005 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 76 U ( X.U77 0.014 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 77 U ( X.U78 0.011 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 78 U ( X.U79 0.016 k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 79 G ( X.G80 0.016 k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,cap-donor 80 G ( X.G81 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 81 G . X.G82 0.012 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 82 G . X.G83 0.014 k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 83 A . X.A84 0.006 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 84 G ( X.G85 0.013 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 85 C ( X.C86 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 86 U ( X.U87 0.007 k-turn,anti,~C3'-endo,non-stack,canonical,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 87 G ] X.G88 0.019 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,splayed-apart 88 U ] X.U89 0.018 pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,kissing-loop,phosphate 89 A . X.A90 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop 90 A . X.A91 0.019 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,internal-loop,kissing-loop,phosphate 91 G ] X.G92 0.015 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,internal-loop,kissing-loop 92 U ] X.U93 0.008 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 93 A . X.A94 0.007 anti,~C3'-endo,non-pair-contact,hairpin-loop,junction-loop,kissing-loop 94 A ) X.A95 0.013 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 95 G ) X.G96 0.030 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 96 C ) X.C97 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 97 U . X.U98 0.015 k-turn,anti,~C3'-endo,non-pair-contact,internal-loop 98 U . X.U99 0.011 turn,k-turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 99 U . X.U100 0.012 turn,k-turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 100 G . X.G101 0.014 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart 101 A . X.A102 0.035 k-turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 102 U . X.U103 0.010 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 103 C ) X.C104 0.018 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 104 C ) X.C105 0.012 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor 105 A ) X.A106 0.011 k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 106 G ) X.G107 0.020 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 107 A ) X.A108 0.017 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 108 G ) X.G109 0.018 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 109 A . X.A110 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 110 U . X.U111 0.018 anti,~C3'-endo,non-pair-contact,ss-non-loop 111 U . X.U112 0.013 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,splayed-apart 112 U ) X.U113 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,splayed-apart 113 C ) X.C114 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 114 C ) X.C115 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper 115 G . X.G116 0.029 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 116 A . X.A117 0.005 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 117 A . X.A118 0.016 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 118 U . X.U119 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-donor,phosphate,splayed-apart 119 G ( X.G120 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 120 G ( X.G121 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 121 G ( X.G122 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 122 G . X.G123 0.016 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 123 A . X.A124 0.009 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 124 A . X.A125 0.021 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,ribose-zipper,phosphate,splayed-apart 125 A . X.A126 0.027 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,splayed-apart 126 C ) X.C127 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 127 C ) X.C128 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 128 C ) X.C129 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 129 A ( X.A130 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 130 G ( X.G131 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 131 C ( X.C132 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 132 A ( X.A133 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 133 U ( X.U134 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 134 G ( X.G135 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 135 A ( X.A136 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 136 G . X.G137 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 137 U . X.U138 0.013 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 138 U . X.U139 0.013 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 139 A . X.A140 0.011 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate 140 U . X.U141 0.007 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,ribose-zipper,phosphate 141 G . X.G142 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 142 U ) X.U143 0.009 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,hairpin-loop 143 C ) X.C144 0.012 anti,~C3'-endo,non-stack,canonical,helix,stem,coaxial-stack 144 A ) X.A145 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 145 U ) X.U146 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 146 G ) X.G147 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 147 U ) X.U148 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 148 U ) X.U149 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-acceptor,splayed-apart 149 A . X.A150 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-acceptor,splayed-apart 150 U ( X.U151 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 151 C ( X.C152 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 152 G ( X.G153 0.013 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 153 A ( X.A154 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 154 U ( X.U155 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 155 A ( X.A156 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 156 U ( X.U157 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 157 G . X.G158 0.015 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 158 U . X.U159 0.013 break,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop 159 A . X.A162 0.019 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,A-minor,phosphate 160 U . X.U163 0.009 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,ss-non-loop 161 A . X.A164 0.013 syn,~C2'-endo,BI,non-pair-contact,ss-non-loop 162 C . X.C165 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate 163 A . X.A166 0.016 anti,~C2'-endo,BI,non-pair-contact,ss-non-loop,phosphate 164 U . X.U167 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate 165 A . X.A168 0.021 syn,~C3'-endo,non-pair-contact,ss-non-loop 166 G . X.G169 0.017 syn,~C2'-endo,BI,non-pair-contact,ss-non-loop,phosphate 167 C . X.C170 0.009 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 168 A ) X.A171 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 169 U ) X.U172 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 170 A ) X.A173 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 171 U ) X.U174 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 172 C ) X.C175 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 173 A . X.A176 0.007 turn,anti,~C2'-endo,non-pair-contact,bulge,splayed-apart 174 G ) X.G177 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 175 A ) X.A178 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 176 A . X.A179 0.025 anti,non-canonical,non-pair-contact,helix,junction-loop,phosphate 177 G ) X.G180 0.014 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor 178 G ) X.G181 0.030 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 179 C . X.C182 0.015 anti,non-pair-contact,junction-loop 180 A . X.A183 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart 181 C . X.C184 0.011 turn,anti,~C2'-endo,junction-loop,splayed-apart 182 A . X.A185 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper,splayed-apart 183 C ( X.C186 0.014 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,A-minor,ribose-zipper 184 C ( X.C187 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 185 C ( X.C188 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 186 G ( X.G189 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 187 G ( X.G190 0.014 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 188 A . X.A191 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 189 G . X.G192 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 190 A . X.A193 0.024 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper,phosphate 191 A . X.A194 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper,phosphate 192 C . X.C195 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor,phosphate 193 U . X.U196 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 194 G ( X.G197 0.032 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,A-minor,kissing-loop,phosphate 195 A . X.A198 0.020 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,kissing-loop,splayed-apart 196 A . X.A199 0.038 turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,kissing-loop,phosphate,splayed-apart 197 A . X.A200 0.023 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,cap-donor,phosphate,splayed-apart 198 C [ X.C201 0.015 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,phosphate 199 A . X.A202 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor,kissing-loop,phosphate,splayed-apart 200 U . X.U203 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,kissing-loop,splayed-apart 201 C ) X.C204 0.009 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,A-minor,kissing-loop 202 U . X.U205 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 203 U . X.U206 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 204 A . X.A207 0.011 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 205 G . X.G208 0.022 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 206 U . X.U209 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 207 A . X.A210 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 208 C . X.C211 0.033 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 209 C ) X.C212 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 210 C ) X.C213 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 211 G ) X.G214 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 212 G ) X.G215 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 213 A . X.A216 0.017 anti,~C3'-endo,BI,non-pair-contact,bulge 214 G ) X.G217 0.025 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,A-minor 215 G . X.G218 0.017 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop 216 A . X.A219 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 217 A . X.A220 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 218 G . X.G221 0.016 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 219 A . X.A222 0.006 anti,~C3'-endo,non-pair-contact,junction-loop,ribose-zipper 220 G . X.G223 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,ribose-zipper 221 A . X.A224 0.015 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 222 A . X.A225 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 223 A . X.A226 0.024 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,splayed-apart 224 G ( X.G227 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart 225 A ( X.A228 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-acceptor 226 A . X.A229 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,cap-donor 227 A . X.A230 0.014 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor 228 A . X.A231 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-donor,cap-acceptor,splayed-apart 229 U . X.U232 0.008 turn,anti,~C3'-endo,non-stack,hairpin-loop,splayed-apart 230 U ) X.U233 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-donor,splayed-apart 231 C ) X.C234 0.016 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,cap-donor 232 G . X.G235 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart 233 A . X.A236 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,ribose-zipper,splayed-apart 234 U . X.U237 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 235 U ( X.U238 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 236 C ( X.C239 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 237 C ( X.C240 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 238 C ( X.C241 0.018 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,ribose-zipper 239 U . X.U242 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 240 U . X.U243 0.023 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 241 A . X.A244 0.020 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 242 G . X.G245 0.024 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 243 U . X.U246 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 244 A . X.A247 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 245 G ( X.G248 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 246 C ( X.C249 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop,phosphate 247 G . X.G250 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,kissing-loop,phosphate 248 G ] X.G251 0.021 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,splayed-apart 249 C . X.C252 0.010 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop,phosphate,splayed-apart 250 G . X.G253 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,kissing-loop,splayed-apart 251 A . X.A254 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,A-minor,kissing-loop,phosphate 252 G ) X.G255 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop 253 C ) X.C256 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 254 G . X.G257 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 255 A . X.A258 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 256 A . X.A259 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 257 A . X.A260 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 258 C . X.C261 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 259 G ) X.G262 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 260 G ) X.G263 0.032 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 261 G ) X.G264 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 262 A ) X.A265 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper 263 A . X.A266 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,ribose-zipper 264 G . X.G267 0.008 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 265 A . X.A268 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 266 G ( X.G269 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 267 C ( X.C270 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 268 C ( X.C271 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 269 C . X.C272 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 270 A . X.A273 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 271 A . X.A274 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,A-minor,ribose-zipper 272 A . X.A275 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper 273 C ( X.C276 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 274 C ( X.C277 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 275 A ( X.A278 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 276 A ( X.A279 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 277 C ( X.C280 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 278 A . X.A281 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 279 A ( X.A282 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 280 G ( X.G283 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor 281 C . X.C284 0.005 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,splayed-apart 282 U . X.U285 0.011 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 283 U . X.U286 0.007 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 284 G . X.G287 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 285 C ) X.C288 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 286 U ) X.U289 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 287 U . X.U290 0.004 anti,~C2'-endo,non-stack,internal-loop 288 G ) X.G291 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 289 U ) X.U292 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 290 U ) X.U293 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 291 G ) X.G294 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 292 G ) X.G295 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 293 G . X.G296 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 294 G . X.G297 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 295 U . X.U298 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 296 U . X.U299 0.013 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 297 G ( X.G300 0.009 anti,~C2'-endo,BII,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart 298 U . X.U301 0.010 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 299 A . X.A302 0.016 anti,~C2'-endo,BI,non-pair-contact,junction-loop,splayed-apart 300 G ( X.G303 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate 301 G ( X.G304 0.012 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 302 A ( X.A305 0.020 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,bulge,phosphate 303 C ( X.C306 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,bulge,phosphate 304 A ( X.A307 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 305 C ( X.C308 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 306 U ( X.U309 0.011 anti,~C2'-endo,non-stack,canonical,non-pair-contact,helix,stem 307 C ( X.C310 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 308 U . X.U311 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 309 A . X.A312 0.013 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 310 U . X.U313 0.009 break,anti,~C3'-endo,non-stack,ss-non-loop 311 G . X.G317 0.017 syn,~C3'-endo,BI,non-pair-contact,ss-non-loop 312 A . X.A318 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop 313 G . X.G319 0.017 turn,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 314 U . X.U320 0.014 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 315 U . X.U321 0.021 turn,anti,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate,splayed-apart 316 A . X.A322 0.010 syn,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 317 C . X.C323 0.025 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate 318 A . X.A324 0.014 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 319 A . X.A325 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,splayed-apart 320 A . X.A326 0.009 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate 321 G . X.G327 0.016 syn,~C2'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 322 G . X.G328 0.013 anti,~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,phosphate 323 A . X.A329 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 324 C . X.C330 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 325 G ( X.G331 0.013 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 326 A ( X.A332 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 327 C ( X.C333 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 328 A ( X.A334 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 329 U ( X.U335 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 330 U ( X.U336 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 331 A . X.A337 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 332 G ( X.G338 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 333 A ( X.A339 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 334 C ( X.C340 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 335 G . X.G341 0.034 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop 336 A . X.A342 0.030 anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,A-minor,ribose-zipper 337 A . X.A343 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-acceptor,splayed-apart 338 U ( X.U344 0.018 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 339 C ( X.C345 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 340 A ( X.A346 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 341 U ( X.U347 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 342 C ( X.C348 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 343 U . X.U349 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 344 G . X.G350 0.038 syn,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 345 G . X.G351 0.015 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 346 A . X.A352 0.028 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate 347 A . X.A353 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 348 A . X.A354 0.015 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor 349 G ) X.G355 0.038 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 350 A ) X.A356 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 351 U ) X.U357 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 352 G ) X.G358 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 353 A ) X.A359 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 354 A [ X.A360 0.016 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 355 U [ X.U361 0.018 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper 356 C ( X.C362 0.020 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,A-minor,ribose-zipper 357 A . X.A363 0.034 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 358 A . X.A364 0.013 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 359 A . X.A365 0.024 anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 360 G ) X.G366 0.014 turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,A-minor,phosphate,splayed-apart 361 A . X.A367 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor,splayed-apart 362 A ( X.A368 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 363 G ( X.G369 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 364 G ( X.G370 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop 365 U . X.U371 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 366 A . X.A372 0.014 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,splayed-apart 367 A . X.A373 0.057 anti,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop 368 U . X.U374 0.018 anti,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 369 A . X.A375 0.035 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,splayed-apart 370 A ] X.A376 0.021 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,A-minor,splayed-apart 371 U ] X.U377 0.024 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,cap-donor,phosphate,splayed-apart 372 C ) X.C378 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,splayed-apart 373 C ) X.C379 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 374 U ) X.U380 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 375 G . X.G381 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop 376 U . X.U382 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate 377 A . X.A383 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 378 G ) X.G384 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 379 U ) X.U385 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 380 C ) X.C386 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 381 G . X.G387 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 382 A . X.A388 0.013 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 383 A . X.A389 0.027 turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,cap-acceptor 384 A ) X.A390 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 385 A ) X.A391 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 386 U ) X.U392 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 387 G ) X.G393 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 388 U ) X.U394 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 389 U ) X.U395 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack 390 G . X.G396 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 391 U . X.U397 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 392 C . X.C398 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 393 U . X.U399 0.012 anti,~C3'-endo,non-pair-contact,ss-non-loop 394 C . X.C400 0.015 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 395 U . X.U401 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop 396 C . X.C402 0.008 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 397 U . X.U403 0.019 anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop 398 U . X.U404 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 399 G ) X.G405 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 400 A ) X.A406 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 401 G ) X.G407 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 402 U ) X.U408 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 403 G ) X.G409 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,bulge 404 G . X.G410 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge 405 A . X.A411 0.005 anti,~C3'-endo,BI,non-stack,non-pair-contact,bulge 406 U ) X.U412 0.009 anti,~C2'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,bulge 407 C ) X.C413 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper,phosphate 408 C ) X.C414 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper 409 U . X.U415 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 410 G . X.G416 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 411 A . X.A417 --- ~C3'-endo,BI,non-stack,junction-loop,phosphate 412 G . X.G418 0.016 turn,anti,non-canonical,non-pair-contact,multiplet,junction-loop 413 U . X.U419 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 414 A . X.A420 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 415 C ( X.C421 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 416 G ( X.G422 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 417 A ( X.A423 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 418 C ( X.C424 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 419 G ( X.G425 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 420 G ( X.G426 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 421 A ( X.A427 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop,phosphate 422 G . X.G428 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 423 C . X.C429 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 424 A . X.A430 0.013 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop 425 C [ X.C431 0.008 pseudoknotted,anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,kissing-loop,splayed-apart 426 G . X.G432 0.012 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,kissing-loop,phosphate,splayed-apart 427 U . X.U433 0.012 turn,anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 428 G . X.G434 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,kissing-loop 429 A . X.A435 0.005 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop 430 A . X.A436 0.013 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,kissing-loop 431 A . X.A437 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 432 U . X.U438 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop,phosphate 433 U ) X.U439 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop 434 C ) X.C440 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 435 C ) X.C441 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 436 G ) X.G442 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 437 U ) X.U443 0.028 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,hairpin-loop,phosphate 438 C ) X.C444 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 439 G ) X.G445 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,junction-loop 440 G . X.G446 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop 441 A . X.A447 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,junction-loop,phosphate 442 A . X.A448 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 443 U . X.U449 0.010 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,junction-loop 444 C ) X.C450 0.005 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,splayed-apart 445 U . X.U451 0.005 turn,anti,~C2'-endo,non-stack,hairpin-loop,junction-loop,splayed-apart 446 G ( X.G452 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,splayed-apart 447 G ( X.G453 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor 448 G ( X.G454 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,cap-donor 449 A ( X.A455 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate 450 G ( X.G456 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,kissing-loop,phosphate,splayed-apart 451 G ] X.G457 0.019 pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,kissing-loop,phosphate,splayed-apart 452 A . X.A458 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop,phosphate,splayed-apart 453 C [ X.C459 0.007 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 454 C [ X.C460 0.010 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop,phosphate 455 A [ X.A461 0.010 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop 456 U [ X.U462 0.011 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 457 C ) X.C463 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,kissing-loop 458 U ) X.U464 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 459 C ) X.C465 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 460 C ) X.C466 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 461 U ) X.U467 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 462 A . X.A468 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 463 A . X.A469 0.018 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 464 G ) X.G470 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 465 G ) X.G471 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 466 C ) X.C472 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 467 U . X.U473 0.017 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop 468 A . X.A474 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 469 A . X.A475 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,ribose-zipper 470 A . X.A476 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 471 U . X.U477 0.014 anti,~C3'-endo,BI,non-stack,non-canonical,junction-loop 472 A . X.A478 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper 473 C ) X.C479 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 474 U ) X.U480 0.024 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 475 C . X.C481 0.017 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 476 U . X.U482 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 477 C ) X.C483 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 478 U ) X.U484 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 479 A ) X.A485 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 480 G ) X.G486 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 481 U ) X.U487 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 482 G ) X.G488 0.031 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 483 A . X.A489 0.017 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate,splayed-apart 484 C ) X.C490 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 485 C ) X.C491 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 486 G . X.G492 0.032 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 487 A . X.A493 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 488 U . X.U494 0.024 turn,anti,~C2'-endo,non-stack,non-canonical,multiplet,junction-loop,cap-acceptor,splayed-apart 489 A . X.A495 0.024 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,phosphate,splayed-apart 490 G . X.G496 0.028 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 491 U . X.U497 0.010 anti,non-pair-contact,junction-loop 492 G . X.G498 0.028 turn,anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 493 A . X.A499 0.015 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 494 A . X.A500 0.030 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart 495 C . X.C501 0.007 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 496 C . X.C502 0.028 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart 497 A . X.A503 0.064 syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 498 G . X.G504 0.027 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 499 U . X.U505 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 500 A . X.A506 0.032 syn,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 501 C ( X.C507 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 502 C ( X.C508 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 503 G . X.G509 0.024 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor 504 U . X.U510 0.012 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 505 G . X.G511 0.032 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate 506 A . X.A512 0.021 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 507 G ) X.G513 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate 508 G ) X.G514 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 509 G . X.G515 0.065 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 510 A . X.A516 0.029 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart 511 A . X.A517 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 512 A . X.A518 0.024 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 513 G ) X.G519 0.041 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,phosphate,splayed-apart 514 G ) X.G520 0.026 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 515 U . X.U521 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-donor,splayed-apart 516 G . X.G522 0.013 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor 517 A . X.A523 0.013 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 518 A . X.A524 0.025 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate 519 A . X.A525 0.014 turn,u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor,phosphate 520 A . X.A526 0.015 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 521 G ( X.G527 0.026 turn,anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,junction-loop,cap-donor,phosphate 522 C . X.C528 0.009 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 523 A . X.A529 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart 524 C ( X.C530 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 525 C ( X.C531 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 526 C ( X.C532 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 527 C ( X.C533 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 528 G . X.G534 0.017 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 529 G . X.G535 0.019 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 530 A . X.A536 0.022 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 531 A . X.A537 0.032 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 532 G ) X.G538 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 533 G ) X.G539 0.024 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 534 G ) X.G540 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 535 G ) X.G541 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 536 A . X.A542 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 537 G . X.G543 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 538 U . X.U544 0.025 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 539 G . X.G545 0.012 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,cap-acceptor 540 A . X.A546 0.018 turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 541 A . X.A547 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate 542 A . X.A548 0.020 turn,u-turn,anti,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate,splayed-apart 543 U . X.U549 0.018 turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart 544 A . X.A550 0.027 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 545 G . X.G551 0.022 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 546 A . X.A552 0.021 anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,splayed-apart 547 A . X.A553 0.010 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 548 C ) X.C554 0.018 anti,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,helix-end,multiplet,internal-loop,junction-loop,cap-acceptor,splayed-apart 549 C ) X.C555 0.021 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor,phosphate,splayed-apart 550 U . X.U556 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 551 G . X.G557 0.023 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 552 A . X.A558 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 553 A . X.A559 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 554 A . X.A560 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper,phosphate 555 C ) X.C561 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 556 C ) X.C562 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 557 G ) X.G563 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 558 U ) X.U564 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 559 G ) X.G565 0.031 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 560 U ) X.U566 0.024 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 561 G ) X.G567 0.034 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 562 C ) X.C568 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 563 U ) X.U569 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 564 U ) X.U570 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 565 A . X.A571 0.027 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,A-minor,phosphate,splayed-apart 566 C . X.C572 0.011 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,ribose-zipper,cap-donor,phosphate,splayed-apart 567 A . X.A573 0.024 syn,~C3'-endo,BI,non-pair-contact,ss-non-loop,cap-acceptor 568 A . X.A574 0.030 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 569 G . X.G575 0.024 syn,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart 570 U ( X.U576 0.022 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,cap-donor,phosphate,splayed-apart 571 A . X.A577 0.034 syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor,cap-acceptor,phosphate,splayed-apart 572 G ( X.G578 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate,splayed-apart 573 U ( X.U579 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 574 C ( X.C580 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 575 A ( X.A581 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 576 G . X.G582 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 577 A . X.A583 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 578 G ( X.G584 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 579 C ( X.C585 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 580 C ( X.C586 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 581 C ( X.C587 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 582 G . X.G588 0.017 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,hairpin-loop 583 U . X.U589 0.029 anti,~C2'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,phosphate,splayed-apart 584 U [ X.U590 0.035 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 585 A . X.A591 0.016 anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 586 A . X.A592 0.029 anti,~C2'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-acceptor,splayed-apart 587 U . X.U593 0.008 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 588 G ) X.G594 0.019 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,cap-donor,splayed-apart 589 G ) X.G595 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor,phosphate 590 G ) X.G596 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 591 U ) X.U597 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 592 G . X.G598 0.028 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 593 A . X.A599 0.027 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 594 U ) X.U600 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 595 G ) X.G601 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 596 G ) X.G602 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 597 C ) X.C603 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 598 G . X.G604 0.033 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 599 U < X.U605 0.023 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart 600 G . X.G606 0.025 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 601 C ( X.C607 0.031 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor,phosphate 602 C . X.C608 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate 603 U ( X.U609 0.020 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,phosphate 604 U . X.U610 0.020 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 605 U . X.U611 0.031 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 606 U . X.U612 0.033 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate 607 G . X.G613 0.031 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 608 U . X.U614 0.015 u-turn,anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,phosphate 609 A . X.A615 0.019 turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate 610 G . X.G616 0.033 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate 611 A . X.A617 0.044 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 612 A ) X.A618 0.022 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,phosphate,splayed-apart 613 U . X.U619 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate 614 G ) X.G620 0.022 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor,phosphate 615 A . X.A621 0.038 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-acceptor,phosphate,splayed-apart 616 A ( X.A622 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,cap-donor,splayed-apart 617 C ( X.C623 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper,phosphate 618 C ( X.C624 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 619 G ( X.G625 0.027 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,phosphate 620 G ( X.G626 0.022 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,cap-donor 621 C ( X.C627 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 622 G . X.G628 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 623 A . X.A629 0.024 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,cap-acceptor,phosphate 624 G ( X.G630 0.017 turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart 625 U . X.U631 0.030 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 626 U ( X.U632 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 627 A ( X.A633 0.031 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 628 C ( X.C634 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 629 G ( X.G635 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 630 A ( X.A636 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 631 U ( X.U637 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 632 U ( X.U638 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 633 U . X.U639 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 634 G ( X.G640 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 635 A ( X.A641 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 636 U ( X.U642 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 637 G ( X.G643 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 638 C ( X.C644 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 639 A . X.A645 0.027 anti,~C3'-endo,non-pair-contact,junction-loop 640 A . X.A646 0.017 turn,anti,~C2'-endo,BII,non-pair-contact,junction-loop,phosphate 641 G ( X.G647 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 642 G ( X.G648 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 643 U ( X.U649 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 644 U . X.U650 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 645 A . X.A651 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,ribose-zipper,phosphate 646 A . X.A652 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 647 G ( X.G653 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 648 C ( X.C654 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 649 A ( X.A655 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 650 G . X.G656 0.024 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop 651 U . X.U657 0.024 ~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 652 A . X.A658 0.014 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart 653 A . X.A659 0.032 anti,~C2'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart 654 A . X.A660 0.025 syn,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 655 U ) X.U661 0.023 ~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,phosphate 656 G ) X.G662 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 657 U ) X.U663 0.022 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 658 G . X.G664 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 659 G . X.G665 0.015 turn,syn,~C2'-endo,non-pair-contact,internal-loop,phosphate 660 A . X.A666 0.051 turn,syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 661 G ) X.G667 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 662 C ) X.C668 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 663 C ) X.C669 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 664 G . X.G670 0.019 anti,~C3'-endo,BI,non-pair-contact,junction-loop 665 U . X.U671 0.011 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 666 A . X.A672 0.014 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 667 G ( X.G673 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 668 C ( X.C674 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate 669 G . X.G675 0.019 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 670 A . X.A676 0.016 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor 671 A . X.A677 0.014 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 672 A . X.A678 0.013 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 673 G ) X.G679 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 674 C ) X.C680 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 675 G . X.G681 0.035 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 676 A . X.A682 0.014 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate 677 G . X.G683 0.030 anti,~C3'-endo,BI,non-pair-contact,junction-loop 678 U ( X.U684 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate 679 C ( X.C685 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 680 U ( X.U686 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate 681 G . X.G687 0.037 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 682 A . X.A688 0.018 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,splayed-apart 683 A . X.A689 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate 684 U . X.U690 --- turn,u-turn,~C3'-endo,non-stack,hairpin-loop,phosphate 685 A . X.A691 0.011 anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor 686 G ) X.G692 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 687 G ) X.G693 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 688 G ) X.G694 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 689 C . X.C695 0.013 anti,~C3'-endo,BI,non-pair-contact,junction-loop 690 G . X.G696 0.051 anti,~C3'-endo,BI,non-pair-contact,junction-loop 691 U . X.U697 0.027 anti,~C3'-endo,non-pair-contact,junction-loop,cap-donor 692 U . X.U698 0.017 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 693 U . X.U699 0.003 anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 694 A . X.A700 0.013 anti,~C2'-endo,BII,non-pair-contact,junction-loop 695 G ) X.G701 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 696 U ) X.U702 0.031 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 697 A ) X.A703 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 698 U ) X.U704 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 699 U ) X.U705 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 700 U . X.U706 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 701 G ) X.G707 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 702 G ) X.G708 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 703 U ) X.U709 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 704 C ) X.C710 0.008 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 705 G ) X.G711 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 706 U ) X.U712 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 707 A ) X.A713 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 708 G . X.G714 0.011 turn,anti,~C2'-endo,non-pair-contact,junction-loop,phosphate 709 A . X.A715 0.022 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 710 C ( X.C716 0.035 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,cap-donor,phosphate,splayed-apart 711 C ( X.C717 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate 712 C . X.C718 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate 713 G ( X.G719 0.020 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate 714 A . X.A720 0.037 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 715 A . X.A721 0.088 syn,non-canonical,non-pair-contact,helix,multiplet,internal-loop,ribose-zipper 716 A . X.A722 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 717 C ( X.C723 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper 718 C ( X.C724 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 719 A ( X.A725 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 720 G ( X.G726 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 721 G ( X.G727 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 722 U ( X.U728 0.037 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,ribose-zipper 723 G . X.G729 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate 724 A . X.A730 0.013 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,A-minor,phosphate,splayed-apart 725 U . X.U731 0.016 turn,anti,~C2'-endo,non-stack,ss-non-loop,phosphate,splayed-apart 726 C . X.C732 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,splayed-apart 727 U . X.U733 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop 728 A ( X.A734 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 729 C ( X.C735 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 730 C ( X.C736 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate 731 C ( X.C737 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper,phosphate 732 U ( X.U738 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper 733 U ( X.U739 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 734 G ( X.G740 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 735 G ( X.G741 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 736 U ( X.U742 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge 737 C ( X.C743 0.024 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,phosphate,splayed-apart 738 A . X.A744 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,ribose-zipper,splayed-apart 739 G ( X.G745 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper 740 G ( X.G746 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 741 U ( X.U747 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 742 U ( X.U748 0.011 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop 743 G . X.G749 0.013 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 744 A . X.A750 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 745 A . X.A751 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 746 G ( X.G752 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 747 U ( X.U753 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 748 U ( X.U754 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 749 C ( X.C755 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 750 A ( X.A756 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 751 G . X.G757 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 752 G . X.G758 0.007 break,anti,~C3'-endo,non-stack,non-canonical,ss-non-loop 753 C . X.C764 0.009 anti,~C3'-endo,BII,non-stack,non-canonical,helix-end,ss-non-loop 754 U ) X.U765 0.005 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack 755 G ) X.G766 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 756 A ) X.A767 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 757 A ) X.A768 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 758 U ) X.U769 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 759 G . X.G770 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 760 G . X.G771 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 761 A . X.A772 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 762 G ) X.G773 0.012 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,splayed-apart 763 G < X.G774 0.018 pseudoknotted,turn,syn,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,bulge,splayed-apart 764 A ) X.A775 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 765 C ) X.C776 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 766 C ) X.C777 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 767 G . X.G778 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 768 A . X.A779 0.036 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 769 A . X.A780 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 770 C ( X.C781 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 771 C ( X.C782 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 772 G ( X.G783 0.026 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 773 A . X.A784 0.031 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate 774 C ( X.C785 0.020 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,cap-donor,phosphate 775 U ( X.U786 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 776 U ( X.U787 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 777 A ( X.A788 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 778 C ( X.C789 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate 779 G . X.G790 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 780 U . X.U791 0.023 anti,non-pair-contact,hairpin-loop,splayed-apart 781 U . X.U792 0.016 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 782 G . X.G793 0.030 anti,non-pair-contact,hairpin-loop,phosphate,splayed-apart 783 A . X.A794 0.026 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,phosphate 784 A . X.A795 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 785 A . X.A796 0.016 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 786 A A X.A797 0.025 pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 787 G ) X.G798 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate 788 U ) X.U799 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 789 G ) X.G800 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 790 A ) X.A801 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 791 G ) X.G802 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 792 C ) X.C803 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 793 G ) X.G804 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 794 G ) X.G805 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 795 A . X.A806 0.023 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 796 U . X.U807 0.008 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 797 G ) X.G808 0.015 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,cap-acceptor,phosphate,splayed-apart 798 A . X.A809 0.014 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,bulge,phosphate,splayed-apart 799 A ) X.A810 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge,splayed-apart 800 C ) X.C811 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 801 U ) X.U812 0.021 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 802 G ) X.G813 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 803 A ) X.A814 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 804 G ) X.G815 0.017 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate 805 G ) X.G816 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate 806 G ) X.G817 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 807 U ) X.U818 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end 808 A . X.A819 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor 809 G ( X.G820 0.020 anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 810 C . X.C821 0.011 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 811 G ( X.G822 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,splayed-apart 812 G ( X.G823 0.019 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 813 A ( X.A824 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 814 G . X.G825 0.025 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 815 A . X.A826 0.015 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,phosphate,splayed-apart 816 A . X.A827 0.024 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 817 A . X.A828 0.026 turn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,phosphate 818 U [ X.U829 0.016 pseudoknotted,turn,anti,~C2'-endo,BII,isolated-canonical,non-pair-contact,hairpin-loop,phosphate 819 U ) X.U830 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-donor,phosphate 820 C ) X.C831 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor 821 C ) X.C832 0.008 anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,A-minor,phosphate,splayed-apart 822 A . X.A833 0.031 anti,~C2'-endo,non-pair-contact,hairpin-loop,internal-loop,cap-donor,phosphate,splayed-apart 823 A . X.A834 0.036 anti,~C2'-endo,non-pair-contact,hairpin-loop,internal-loop,splayed-apart 824 U . X.U835 0.023 anti,~C2'-endo,non-stack,hairpin-loop,internal-loop,phosphate,splayed-apart 825 C ) X.C836 0.012 anti,~C2'-endo,BII,non-stack,isolated-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,splayed-apart 826 G . X.G837 0.016 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,splayed-apart 827 A ] X.A838 0.019 pseudoknotted,anti,~C2'-endo,BII,non-stack,isolated-canonical,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 828 A ) X.A839 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,phosphate,splayed-apart 829 C ) X.C840 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 830 C ) X.C841 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 831 U ) X.U842 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 832 G ) X.G843 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 833 G ) X.G844 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,phosphate 834 A . X.A845 0.027 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor,phosphate,splayed-apart 835 G . X.G846 0.039 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 836 A . X.A847 0.025 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,phosphate,splayed-apart 837 U . X.U848 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 838 A . X.A849 0.014 anti,~C3'-endo,BII,non-pair-contact,internal-loop,cap-donor,splayed-apart 839 G . X.G850 0.041 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 840 C ) X.C851 0.012 anti,~C3'-endo,BI,non-stack,isolated-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,phosphate,splayed-apart 841 U . X.U852 0.028 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate 842 G ) X.G853 0.018 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 843 G ) X.G854 0.030 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 844 U ) X.U855 0.020 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,splayed-apart 845 U . X.U856 0.015 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 846 C ( X.C857 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper,splayed-apart 847 U ( X.U858 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper,phosphate 848 C ( X.C859 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 849 U ( X.U860 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 850 C ( X.C861 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 851 C ( X.C862 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 852 G . X.G863 0.025 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper,phosphate 853 A . X.A864 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper,phosphate 854 A . X.A865 0.043 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 855 A . X.A866 0.021 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 856 U ( X.U867 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 857 A ( X.A868 0.020 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 858 G ( X.G869 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 859 C ( X.C870 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 860 U ( X.U871 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate,splayed-apart 861 U . X.U872 0.017 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 862 U . X.U873 0.009 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate 863 A . X.A874 0.018 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 864 G . X.G875 0.029 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 865 G ) X.G876 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart 866 G ) X.G877 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 867 C ) X.C878 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 868 U ) X.U879 0.019 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 869 A ) X.A880 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 870 G ( X.G881 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 871 C ( X.C882 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,ribose-zipper 872 C ( X.C883 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,ribose-zipper 873 U ( X.U884 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 874 C ( X.C885 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 875 A ( X.A886 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 876 A ( X.A887 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 877 G ( X.G888 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 878 U ( X.U889 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 879 G . X.G890 0.039 anti,non-pair-contact,internal-loop 880 A . X.A891 0.024 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor 881 U . X.U892 0.026 turn,anti,~C3'-endo,non-stack,non-canonical,helix-end,internal-loop,cap-acceptor 882 G ( X.G893 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 883 A ( X.A894 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 884 U ( X.U895 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 885 U ( X.U896 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 886 A ( X.A897 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 887 U ( X.U898 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 888 U ( X.U899 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 889 G ( X.G900 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 890 G ( X.G901 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 891 A . X.A902 0.027 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 892 G . X.G903 0.016 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 893 G . X.G904 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 894 U . X.U905 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 895 A . X.A906 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 896 G ( X.G907 0.017 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop,ribose-zipper,phosphate 897 A ( X.A908 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 898 G ( X.G909 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 899 C . X.C910 0.019 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 900 A . X.A911 0.016 turn,anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,A-minor 901 C . X.C912 0.018 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 902 U ( X.U913 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop 903 G ( X.G914 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 904 U ( X.U915 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 905 U ( X.U916 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 906 U ( X.U917 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 907 G ( X.G918 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 908 G ( X.G919 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 909 A ( X.A920 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 910 C . X.C921 0.009 anti,~C3'-endo,non-pair-contact,internal-loop 911 G . X.G922 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 912 A . X.A923 0.012 turn,syn,~C3'-endo,BI,non-pair-contact,internal-loop 913 G . X.G924 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 914 G ( X.G925 0.016 break,anti,~C2'-endo,non-stack,isolated-canonical,non-canonical,multiplet,internal-loop 915 G . X.G938 0.007 anti,~C3'-endo,non-stack,ss-non-loop 916 U . X.U939 0.006 anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop 917 U . X.U940 0.004 anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop 918 A . X.A941 0.004 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 919 C ) X.C942 0.010 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,multiplet,internal-loop 920 C . X.C943 0.009 anti,~C2'-endo,non-pair-contact,internal-loop 921 G . X.G944 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 922 A . X.A945 0.014 syn,~C3'-endo,BI,non-pair-contact,internal-loop 923 A . X.A946 0.007 anti,~C3'-endo,non-pair-contact,internal-loop 924 U ) X.U947 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 925 U ) X.U948 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 926 C ) X.C949 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 927 A ) X.A950 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 928 G ) X.G951 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 929 A ) X.A952 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 930 C ) X.C953 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 931 A ) X.A954 0.016 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,splayed-apart 932 A . X.A955 0.047 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,ribose-zipper,phosphate,splayed-apart 933 A . X.A956 0.024 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,ribose-zipper,phosphate,splayed-apart 934 C ) X.C957 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate,splayed-apart 935 U ) X.U958 0.025 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 936 C . X.C959 0.025 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge,phosphate 937 C ) X.C960 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 938 G . X.G961 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 939 A . X.A962 0.033 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 940 A . X.A963 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 941 U . X.U964 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 942 G . X.G965 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 943 C ) X.C966 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 944 C ) X.C967 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 945 A ) X.A968 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 946 A ) X.A969 0.014 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 947 U . X.U970 0.005 turn,anti,~C2'-endo,non-stack,bulge,splayed-apart 948 U ) X.U971 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 949 A ) X.A972 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 950 A ) X.A973 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 951 U ) X.U974 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 952 U ) X.U975 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 953 U . X.U976 0.025 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 954 A . X.A977 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 955 A ) X.A978 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 956 C ) X.C979 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 957 U ) X.U980 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 958 U ) X.U981 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 959 G ) X.G982 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 960 G ) X.G983 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 961 G ) X.G984 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-acceptor,phosphate 962 A . X.A985 0.024 anti,~C3'-endo,non-pair-contact,bulge,ribose-zipper,cap-donor 963 G ) X.G986 0.023 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,ribose-zipper 964 U ) X.U987 0.038 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 965 C . X.C988 0.022 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 966 A . X.A989 0.027 turn,anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 967 G ( X.G990 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate,splayed-apart 968 A ( X.A991 0.019 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 969 A ( X.A992 0.042 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 970 C ( X.C993 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 971 A ( X.A994 0.035 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 972 U ( X.U995 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 973 G ( X.G996 0.038 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 974 G ( X.G997 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 975 G ( X.G998 0.028 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 976 U ( X.U999 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop 977 G . X.G1000 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop 978 A . X.A1001 0.015 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 979 U . X.U1002 0.010 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 980 A . X.A1003 0.028 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,splayed-apart 981 A . X.A1004 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,phosphate,splayed-apart 982 G . X.G1005 0.028 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 983 G ) X.G1006 0.018 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,cap-donor,phosphate,splayed-apart 984 U ) X.U1007 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 985 C ) X.C1008 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 986 C ) X.C1009 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,ribose-zipper 987 G ) X.G1010 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 988 U ) X.U1011 0.031 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 989 G ) X.G1012 0.030 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 990 U ) X.U1013 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 991 U ) X.U1014 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 992 C ) X.C1015 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 993 G . X.G1016 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 994 A . X.A1017 0.028 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 995 A . X.A1018 0.021 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 996 A . X.A1019 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 997 G ( X.G1020 0.026 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,A-minor,cap-donor 998 G ( X.G1021 0.016 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate 999 G ( X.G1022 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 1000 A . X.A1023 0.025 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1001 A . X.A1024 0.031 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,splayed-apart 1002 A . X.A1025 0.030 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 1003 C . X.C1026 0.020 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1004 A . X.A1027 0.032 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,splayed-apart 1005 G . X.G1028 0.017 syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate 1006 C ) X.C1029 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate 1007 C ) X.C1030 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 1008 C ) X.C1031 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,A-minor,ribose-zipper 1009 A . X.A1032 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,phosphate 1010 G . X.G1033 0.033 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 1011 A . X.A1034 0.029 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 1012 C ( X.C1035 0.022 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1013 C ( X.C1036 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1014 A ( X.A1037 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1015 C ( X.C1038 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1016 C . X.C1039 0.014 turn,anti,~C2'-endo,BII,non-pair-contact,bulge,phosphate,splayed-apart 1017 A ( X.A1040 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1018 G ( X.G1041 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1019 C ( X.C1042 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1020 U . X.U1043 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1021 A . X.A1044 0.021 anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 1022 A . X.A1045 0.027 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 1023 G ( X.G1046 0.024 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 1024 G ( X.G1047 0.033 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1025 U ( X.U1048 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 1026 C [ X.C1049 0.012 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,phosphate,splayed-apart 1027 C [ X.C1050 0.028 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1028 C . X.C1051 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1029 A . X.A1052 0.032 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 1030 A . X.A1053 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,phosphate 1031 A . X.A1054 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 1032 A ( X.A1055 0.028 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate,splayed-apart 1033 U . X.U1056 0.026 turn,anti,~C2'-endo,non-canonical,helix-end,multiplet,bulge,phosphate,splayed-apart 1034 A ( X.A1057 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1035 U ( X.U1058 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1036 A ( X.A1059 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1037 U ( X.U1060 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1038 G ( X.G1061 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1039 U ( X.U1062 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1040 U . X.U1063 0.031 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1041 A . X.A1064 0.031 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate 1042 A . X.A1065 0.089 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor 1043 G . X.G1066 0.023 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1044 U . X.U1067 0.016 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1045 G ( X.G1068 0.023 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate 1046 G . X.G1069 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop 1047 A . X.A1070 --- ~C3'-endo,BI,non-stack,junction-loop,phosphate 1048 A . X.A1071 0.022 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1049 A . X.A1072 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,ribose-zipper 1050 A . X.A1073 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper,phosphate 1051 G ( X.G1074 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1052 G ( X.G1075 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1053 A . X.A1076 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1054 U . X.U1077 0.009 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1055 G ( X.G1078 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 1056 U ( X.U1079 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1057 G ( X.G1080 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1058 G ( X.G1081 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1059 C . X.C1082 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1060 G ( X.G1083 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1061 U ( X.U1084 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1062 U ( X.U1085 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1063 G ( X.G1086 0.021 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1064 C ( X.C1087 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1065 C . X.C1088 0.006 anti,~C3'-endo,BII,non-pair-contact,internal-loop 1066 C . X.C1089 0.005 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1067 A . X.A1090 0.011 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1068 G . X.G1091 0.008 anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 1069 A . X.A1092 0.017 anti,~C2'-endo,BI,non-canonical,non-pair-contact,internal-loop,phosphate 1070 C { X.C1093 0.015 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop 1071 A . X.A1094 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1072 A ( X.A1095 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 1073 C ( X.C1096 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1074 U . X.U1097 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 1075 A . X.A1098 0.017 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1076 G ( X.G1099 0.018 break,anti,~C3'-endo,isolated-canonical,non-pair-contact,internal-loop 1077 C . X.C1144 0.019 anti,~C3'-endo,non-stack,ss-non-loop 1078 U . X.U1145 0.012 anti,~C2'-endo,non-pair-contact,ss-non-loop 1079 C . X.C1146 0.014 anti,~C2'-endo,non-pair-contact,ss-non-loop 1080 A . X.A1147 --- ~C3'-endo,BI,non-stack,ss-non-loop 1081 C ) X.C1148 0.012 anti,~C3'-endo,non-stack,isolated-canonical,internal-loop 1082 U . X.U1149 0.007 anti,~C3'-endo,non-stack,non-pair-contact,internal-loop 1083 A . X.A1150 0.017 anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,phosphate 1084 G ) X.G1151 0.017 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop 1085 U ) X.U1152 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1086 C . X.C1153 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1087 G . X.G1154 0.006 anti,~C2'-endo,BII,non-pair-contact,internal-loop 1088 A . X.A1155 0.011 ~C2'-endo,BI,non-canonical,non-pair-contact,internal-loop 1089 G ) X.G1156 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1090 U ) X.U1157 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1091 G ) X.G1158 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1092 A ) X.A1159 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1093 C ) X.C1160 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1094 A . X.A1161 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1095 C ) X.C1162 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1096 U ) X.U1163 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1097 G ) X.G1164 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1098 C ) X.C1165 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1099 G . X.G1166 0.024 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1100 C ) X.C1167 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1101 C ) X.C1168 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1102 G . X.G1169 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 1103 A . X.A1170 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate,splayed-apart 1104 A . X.A1171 0.036 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart 1105 A . X.A1172 0.022 anti,~C2'-endo,BII,non-pair-contact,junction-loop,A-minor 1106 A . X.A1173 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1107 U . X.U1174 0.020 anti,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,splayed-apart 1108 G . X.G1175 0.031 anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,cap-acceptor,phosphate 1109 U . X.U1176 0.022 turn,anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop 1110 A . X.A1177 0.036 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,splayed-apart 1111 C . X.C1178 0.023 anti,non-stack,junction-loop,splayed-apart 1112 C . X.C1179 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 1113 G . X.G1180 0.044 turn,syn,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1114 G ] X.G1181 0.012 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 1115 G ] X.G1182 0.011 pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop 1116 G . X.G1183 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate 1117 C ) X.C1184 0.012 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate 1118 U . X.U1185 0.024 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor,phosphate 1119 A . X.A1186 0.076 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor,splayed-apart 1120 A . X.A1187 0.022 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate,splayed-apart 1121 A ) X.A1188 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1122 C ) X.C1189 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1123 A ) X.A1190 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1124 U ) X.U1191 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1125 A ) X.A1192 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1126 U ) X.U1193 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1127 U ) X.U1194 0.014 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop 1128 A ) X.A1195 0.040 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1129 C ) X.C1196 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper,phosphate 1130 C ) X.C1197 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper,phosphate 1131 G . X.G1198 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1132 A . X.A1199 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1133 A . X.A1200 0.032 turn,anti,~C2'-endo,non-stack,non-canonical,multiplet,internal-loop,cap-acceptor,phosphate,splayed-apart 1134 G ) X.G1201 0.032 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 1135 C ) X.C1202 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1136 U ) X.U1203 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1137 G ) X.G1204 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1138 U ) X.U1205 0.030 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1139 G ) X.G1206 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1140 G ) X.G1207 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1141 A ( X.A1208 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1142 U ( X.U1209 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1143 U ( X.U1210 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1144 G ( X.G1211 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1145 U ( X.U1212 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1146 C ( X.C1213 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1147 C ( X.C1214 0.010 anti,~C3'-endo,BII,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1148 U . X.U1215 0.011 break,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop 1149 U . X.U1217 0.015 anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate 1150 G ) X.G1218 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,cap-acceptor 1151 G ) X.G1219 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1152 A ) X.A1220 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1153 C ) X.C1221 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1154 A ) X.A1222 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1155 A ) X.A1223 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1156 U ) X.U1224 0.028 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1157 G . X.G1225 0.033 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 1158 G . X.G1226 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 1159 U . X.U1227 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 1160 A . X.A1228 0.030 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper,phosphate 1161 G ) X.G1229 0.040 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper 1162 G ) X.G1230 0.034 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1163 A ) X.A1231 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1164 G ) X.G1232 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1165 A ) X.A1233 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1166 G ) X.G1234 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1167 C ( X.C1235 0.021 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-donor 1168 G . X.G1236 0.037 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1169 U ( X.U1237 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1170 U ( X.U1238 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1171 C ( X.C1239 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1172 U ( X.U1240 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1173 A ( X.A1241 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1174 A ( X.A1242 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1175 G ( X.G1243 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1176 G . X.G1244 0.025 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1177 G ( X.G1245 0.019 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1178 C ( X.C1246 0.015 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1179 G . X.G1247 0.010 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 1180 U . X.U1248 0.016 turn,k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate,splayed-apart 1181 U . X.U1249 0.011 turn,k-turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 1182 G . X.G1250 0.019 k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,splayed-apart 1183 A . X.A1251 0.021 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1184 A . X.A1252 0.014 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 1185 G ( X.G1253 0.031 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,ribose-zipper 1186 C ( X.C1254 0.018 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1187 A ( X.A1255 0.025 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1188 U ( X.U1256 0.014 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1189 G ( X.G1257 0.018 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 1190 A . X.A1258 0.027 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,splayed-apart 1191 U ( X.U1259 0.028 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1192 C ( X.C1260 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1193 G . X.G1261 0.027 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,phosphate 1194 U . X.U1262 0.034 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 1195 A . X.A1263 0.020 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate 1196 A . X.A1264 0.015 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 1197 G ) X.G1265 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1198 G ) X.G1266 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1199 A ] X.A1267 0.026 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 1200 C ) X.C1268 0.027 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1201 A ) X.A1269 0.014 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1202 U ) X.U1270 0.015 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1203 G ) X.G1271 0.030 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1204 U ) X.U1272 0.016 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1205 G . X.G1273 0.022 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1206 G . X.G1274 0.021 k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1207 A . X.A1275 0.027 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1208 G ) X.G1276 0.015 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1209 C ) X.C1277 0.017 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1210 G . X.G1278 0.029 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1211 C ) X.C1279 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1212 U ) X.U1280 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1213 U ) X.U1281 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1214 A ) X.A1282 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1215 G ) X.G1283 0.019 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1216 A ) X.A1284 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1217 A ) X.A1285 0.030 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 1218 G . X.G1286 0.032 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 1219 U . X.U1287 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 1220 G ) X.G1288 0.027 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate,splayed-apart 1221 A . X.A1289 0.095 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate,splayed-apart 1222 G . X.G1290 0.021 anti,~C2'-endo,BII,non-pair-contact,junction-loop,phosphate,splayed-apart 1223 A . X.A1291 0.027 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1224 A . X.A1292 0.023 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,phosphate,splayed-apart 1225 U . X.U1293 0.032 turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1226 G ) X.G1294 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 1227 C ) X.C1295 0.034 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,phosphate 1228 C ) X.C1296 0.029 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,multiplet,phosphate 1229 G ) X.G1297 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor 1230 G ) X.G1298 0.019 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1231 U ) X.U1299 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 1232 G ( X.G1300 0.015 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate 1233 U . X.U1301 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1234 G . X.G1302 0.025 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1235 A . X.A1303 0.028 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 1236 G . X.G1304 0.025 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1237 U . X.U1305 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1238 A . X.A1306 0.028 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1239 G ( X.G1307 0.046 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1240 C ( X.C1308 0.029 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 1241 G . X.G1309 0.017 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,phosphate,splayed-apart 1242 A . X.A1310 0.043 anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart 1243 A . X.A1311 0.007 anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 1244 A . X.A1312 0.036 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,splayed-apart 1245 G ( X.G1313 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1246 A ( X.A1314 0.026 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1247 C ( X.C1315 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1248 G ( X.G1316 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1249 G ( X.G1317 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1250 G ( X.G1318 0.039 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1251 U . X.U1319 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 1252 G . X.G1320 0.039 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1253 A . X.A1321 0.018 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1254 G . X.G1322 0.016 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 1255 A . X.A1323 0.015 u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 1256 A . X.A1324 0.030 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1257 U . X.U1325 0.017 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,phosphate,splayed-apart 1258 C ) X.C1326 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart 1259 C ) X.C1327 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1260 C ) X.C1328 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1261 G ) X.G1329 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1262 U ) X.U1330 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1263 C ) X.C1331 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1264 C ( X.C1332 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1265 A ( X.A1333 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor,phosphate 1266 C ( X.C1334 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1267 C ( X.C1335 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate 1268 G . X.G1336 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 1269 A . X.A1337 0.025 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1270 U . X.U1338 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 1271 U . X.U1339 0.022 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 1272 G ( X.G1340 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1273 A ( X.A1341 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1274 C ( X.C1342 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1275 U . X.U1343 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1276 A . X.A1344 0.007 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1277 A . X.A1345 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 1278 G ( X.G1346 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1279 G ( X.G1347 0.023 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 1280 U . X.U1348 0.025 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge 1281 U . X.U1349 0.021 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,bulge 1282 U ( X.U1350 0.028 turn,syn,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,bulge,junction-loop,cap-donor 1283 C ( X.C1351 0.016 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1284 C ( X.C1352 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1285 A ( X.A1353 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1286 G ( X.G1354 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1287 A ( X.A1355 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1288 G ( X.G1356 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 1289 G . X.G1357 0.038 syn,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 1290 A . X.A1358 0.017 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 1291 A . X.A1359 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 1292 G ( X.G1360 0.054 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 1293 G ( X.G1361 0.044 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,splayed-apart 1294 C . X.C1362 0.017 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1295 U . X.U1363 0.031 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,phosphate,splayed-apart 1296 C . X.C1364 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 1297 G . X.G1365 0.028 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1298 U . X.U1366 0.026 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1299 C ) X.C1367 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,phosphate,splayed-apart 1300 C ) X.C1368 0.036 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1301 G . X.G1369 0.024 turn,syn,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1302 C ) X.C1370 0.026 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,splayed-apart 1303 U ) X.U1371 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1304 C ) X.C1372 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1305 U ) X.U1373 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1306 G ) X.G1374 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1307 G ) X.G1375 0.020 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1308 G . X.G1376 0.009 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 1309 U . X.U1377 0.028 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart 1310 U . X.U1378 0.026 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,phosphate,splayed-apart 1311 A . X.A1379 0.024 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 1312 G [ X.G1380 0.021 pseudoknotted,turn,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,splayed-apart 1313 U [ X.U1381 0.021 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate,splayed-apart 1314 C ( X.C1382 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 1315 G ( X.G1383 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1316 G ( X.G1384 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1317 G ( X.G1385 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate 1318 U . X.U1386 0.006 turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1319 C ( X.C1387 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor,ribose-zipper,splayed-apart 1320 C ( X.C1388 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,bulge,A-minor,ribose-zipper 1321 U . X.U1389 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,bulge,ribose-zipper 1322 A ( X.A1390 0.010 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,internal-loop,A-minor,ribose-zipper,phosphate 1323 A . X.A1391 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,A-minor,ribose-zipper 1324 G ( X.G1392 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1325 C ( X.C1393 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1326 U ( X.U1394 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1327 G . X.G1395 0.071 syn,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1328 A . X.A1396 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 1329 G . X.G1397 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor,phosphate 1330 G ( X.G1398 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop,cap-donor 1331 C ( X.C1399 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 1332 C ( X.C1400 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop,A-minor,ribose-zipper 1333 G . X.G1401 0.027 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 1334 A . X.A1402 0.010 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor 1335 C . X.C1403 0.008 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 1336 A . X.A1404 0.022 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,phosphate 1337 G ) X.G1405 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop,A-minor,cap-donor 1338 G ) X.G1406 0.017 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1339 C ) X.C1407 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1340 G . X.G1408 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 1341 U . X.U1409 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1342 A . X.A1410 0.023 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-donor,phosphate 1343 G ) X.G1411 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1344 G ) X.G1412 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1345 C ) X.C1413 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1346 G . X.G1414 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1347 A . X.A1415 0.014 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 1348 U ) X.U1416 0.009 turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,internal-loop 1349 G ) X.G1417 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,bulge,A-minor,phosphate 1350 G ) X.G1418 0.027 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,junction-loop,A-minor 1351 A . X.A1419 0.016 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1352 U . X.U1420 0.017 anti,~C3'-endo,non-pair-contact,junction-loop 1353 A . X.A1421 0.013 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor 1354 A ( X.A1422 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 1355 C ( X.C1423 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper,cap-donor,phosphate 1356 A ( X.A1424 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1357 G ( X.G1425 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1358 G ( X.G1426 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1359 U . X.U1427 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 1360 U . X.U1428 0.015 u-turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-acceptor 1361 G . X.G1429 0.023 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop 1362 A . X.A1430 0.021 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate 1363 U . X.U1431 0.024 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 1364 A . X.A1432 0.023 anti,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 1365 U . X.U1433 0.012 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 1366 U . X.U1434 0.016 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1367 C ) X.C1435 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1368 C ) X.C1436 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1369 U ) X.U1437 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1370 G ) X.G1438 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1371 U ) X.U1439 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1372 A ] X.A1440 0.008 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1373 C ] X.C1441 0.013 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1374 C ( X.C1442 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1375 A ( X.A1443 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1376 C ( X.C1444 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 1377 C ( X.C1445 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 1378 U ( X.U1446 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1379 A ( X.A1447 0.012 break,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1380 C . X.C1452 0.018 anti,~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop 1381 G . X.G1453 0.012 anti,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart 1382 U . X.U1454 0.023 break,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1383 A . X.A1459 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1384 U ( X.U1460 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1385 C ( X.C1461 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1386 G . X.G1462 0.015 syn,~C3'-endo,BII,non-pair-contact,internal-loop 1387 A . X.A1463 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart 1388 U . X.U1464 0.008 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 1389 G ( X.G1465 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate,splayed-apart 1390 G ( X.G1466 0.024 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet 1391 G ( X.G1467 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1392 G ( X.G1468 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1393 G . X.G1469 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1394 G . X.G1470 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 1395 A . X.A1471 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,cap-acceptor 1396 C . X.C1472 0.009 anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 1397 G ( X.G1473 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1398 C ( X.C1474 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1399 A ( X.A1475 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 1400 G ( X.G1476 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1401 U . X.U1477 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1402 A . X.A1478 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1403 G . X.G1479 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1404 G ( X.G1480 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1405 A ( X.A1481 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1406 U . X.U1482 0.014 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1407 A . X.A1483 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1408 G . X.G1484 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1409 G ( X.G1485 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 1410 C . X.C1486 0.012 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1411 G . X.G1487 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1412 A . X.A1488 0.028 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,splayed-apart 1413 A . X.A1489 0.018 syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 1414 G . X.G1490 0.030 syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart 1415 C . X.C1491 0.020 anti,~C3'-endo,BII,non-canonical,non-pair-contact,ss-non-loop 1416 G . X.G1492 0.027 anti,~C3'-endo,non-pair-contact,ss-non-loop 1417 U . X.U1493 0.013 anti,~C2'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 1418 G . X.G1494 0.020 anti,~C2'-endo,BI,non-pair-contact,ss-non-loop,phosphate 1419 C . X.C1495 0.016 anti,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate 1420 G . X.G1496 0.043 anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate 1421 A . X.A1497 0.031 ~C2'-endo,non-stack,ss-non-loop,splayed-apart 1422 U . X.U1498 0.020 anti,~C2'-endo,non-stack,ss-non-loop,phosphate,splayed-apart 1423 U . X.U1499 0.033 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 1424 G { X.G1500 0.013 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,phosphate 1425 G . X.G1501 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1426 A . X.A1502 0.024 anti,~C2'-endo,non-pair-contact,ss-non-loop,splayed-apart 1427 U . X.U1503 0.011 turn,anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart 1428 U . X.U1504 0.019 anti,~C2'-endo,BI,non-pair-contact,ss-non-loop,cap-donor,splayed-apart 1429 G . X.G1505 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,cap-acceptor,phosphate 1430 C . X.C1506 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 1431 A . X.A1507 0.027 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1432 C . X.C1508 0.014 anti,~C2'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 1433 G . X.G1509 0.012 anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1434 U . X.U1510 0.013 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate,splayed-apart 1435 C . X.C1511 0.012 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 1436 U . X.U1512 0.020 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,ribose-zipper,phosphate 1437 A . X.A1513 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor,ribose-zipper 1438 A . X.A1514 0.026 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 1439 G . X.G1515 0.022 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1440 C ( X.C1516 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 1441 A ( X.A1517 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1442 G ( X.G1518 0.012 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1443 U . X.U1519 0.035 break,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,phosphate 1444 A . X.A1521 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,phosphate 1445 G . X.G1522 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 1446 G ( X.G1523 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1447 C ( X.C1524 0.016 break,anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1448 G . X.G1526 0.022 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,cap-donor 1449 A . X.A1527 0.011 anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor 1450 G ( X.G1528 0.010 anti,~C2'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 1451 U . X.U1529 0.011 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1452 A ( X.A1530 0.019 break,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop 1453 A . X.A1539 0.020 anti,~C3'-endo,non-stack,non-canonical,helix-end,ss-non-loop 1454 U . X.U1540 0.010 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart 1455 C . X.C1541 0.009 turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 1456 C . X.C1542 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,splayed-apart 1457 G . X.G1543 0.028 anti,~C3'-endo,non-pair-contact,ss-non-loop 1458 G . X.G1544 0.025 anti,~C3'-endo,non-pair-contact,ss-non-loop 1459 U ) X.U1545 0.014 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 1460 A . X.A1546 0.009 ~C2'-endo,non-canonical,non-pair-contact,internal-loop 1461 C ) X.C1547 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1462 U . X.U1548 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop 1463 C . X.C1549 0.013 anti,~C3'-endo,non-pair-contact,ss-non-loop 1464 G . X.G1550 0.019 anti,~C3'-endo,BI,non-stack,non-canonical,ss-non-loop 1465 U . X.U1551 0.009 break,anti,~C3'-endo,non-stack,ss-non-loop 1466 G . X.G1555 0.008 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1467 G ) X.G1556 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1468 C ) X.C1557 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 1469 U . X.U1558 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1470 G . X.G1559 0.016 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1471 A . X.A1560 0.011 anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,ss-non-loop 1472 G . X.G1561 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop 1473 C ) X.C1562 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1474 U ) X.U1563 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1475 G ) X.G1564 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1476 U . X.U1565 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 1477 G . X.G1566 0.033 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1478 A . X.A1567 0.025 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,phosphate 1479 U . X.U1568 0.012 anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 1480 G . X.G1569 0.014 turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1481 G . X.G1570 0.018 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,splayed-apart 1482 G . X.G1571 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1483 G . X.G1572 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 1484 A . X.A1573 0.025 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop 1485 G . X.G1574 0.039 anti,~C3'-endo,non-pair-contact,ss-non-loop 1486 A . X.A1575 0.010 anti,~C3'-endo,non-pair-contact,ss-non-loop 1487 A . X.A1576 0.023 anti,~C2'-endo,BII,non-stack,non-pair-contact,ss-non-loop,phosphate 1488 G . X.G1577 0.013 anti,~C3'-endo,non-pair-contact,ss-non-loop 1489 A . X.A1578 0.013 break,anti,~C3'-endo,non-pair-contact,ss-non-loop 1490 G . X.G1591 0.018 syn,non-stack,ss-non-loop,phosphate 1491 A . X.A1592 0.015 syn,~C2'-endo,BII,non-pair-contact,ss-non-loop 1492 G . X.G1593 0.043 ~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate 1493 U . X.U1594 0.012 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,splayed-apart 1494 C . X.C1595 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart 1495 G . X.G1596 0.033 anti,~C3'-endo,non-pair-contact,ss-non-loop 1496 U . X.U1597 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 1497 U ) X.U1598 0.017 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate 1498 G . X.G1599 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1499 A . X.A1600 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1500 U . X.U1601 0.017 anti,~C3'-endo,non-pair-contact,internal-loop 1501 U . X.U1602 0.013 turn,anti,~C2'-endo,non-stack,non-canonical,internal-loop,splayed-apart 1502 U ) X.U1603 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1503 C ) X.C1604 0.011 anti,~C3'-endo,non-stack,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1504 A . X.A1605 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1505 C . X.C1606 0.010 turn,anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop 1506 A . X.A1607 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1507 C ) X.C1608 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1508 U ) X.U1609 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1509 G ) X.G1610 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1510 C ) X.C1611 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1511 C ( X.C1612 0.011 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 1512 G . X.G1613 0.018 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1513 A . X.A1614 0.009 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1514 G ) X.G1615 0.016 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate,splayed-apart 1515 A . X.A1616 0.018 anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,cap-donor,phosphate,splayed-apart 1516 A . X.A1617 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-donor,phosphate 1517 A . X.A1618 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,phosphate 1518 A . X.A1619 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper 1519 G . X.G1620 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 1520 C ) X.C1621 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1521 C ) X.C1622 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1522 U ) X.U1623 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet 1523 C ) X.C1624 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 1524 U . X.U1625 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,cap-donor,phosphate 1525 A . X.A1626 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1526 G ) X.G1627 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1527 A ) X.A1628 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1528 U . X.U1629 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 1529 A . X.A1630 0.014 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 1530 G . X.G1631 0.016 syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate 1531 A . X.A1632 0.021 break,syn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate 1532 A . X.A1635 0.014 ~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop 1533 U ) X.U1636 0.008 anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1534 A ) X.A1637 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1535 G ) X.G1638 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1536 G ) X.G1639 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1537 U ) X.U1640 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1538 G ) X.G1641 0.011 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1539 C ) X.C1642 0.012 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 1540 C ) X.C1643 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1541 C ) X.C1644 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1542 G ) X.G1645 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 1543 U . X.U1646 0.037 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart 1544 A ) X.A1647 0.022 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,junction-loop,cap-donor,phosphate,splayed-apart 1545 C ) X.C1648 0.018 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,phosphate 1546 C ) X.C1649 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor 1547 G . X.G1650 0.014 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart 1548 C . X.C1651 0.025 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1549 A . X.A1652 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,splayed-apart 1550 A . X.A1653 0.021 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1551 A . X.A1654 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1552 C ( X.C1655 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart 1553 C ( X.C1656 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 1554 G . X.G1657 0.014 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1555 A . X.A1658 0.032 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1556 C . X.C1659 0.025 anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1557 A . X.A1660 0.024 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart 1558 C . X.C1661 0.021 anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1559 A . X.A1662 0.031 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1560 G ) X.G1663 0.034 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart 1561 G ) X.G1664 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1562 U . X.U1665 0.033 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate 1563 A . X.A1666 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1564 G ) X.G1667 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1565 U ) X.U1668 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1566 C ) X.C1669 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1567 A . X.A1670 0.015 anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart 1568 A ( X.A1671 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1569 G ( X.G1672 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1570 A ( X.A1673 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1571 U . X.U1674 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,A-minor 1572 G . X.G1675 0.017 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1573 A . X.A1676 0.012 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper 1574 G . X.G1677 0.009 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate,splayed-apart 1575 A . X.A1678 0.014 turn,u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1576 A . X.A1679 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1577 U . X.U1680 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,A-minor,phosphate 1578 U ) X.U1681 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1579 C ) X.C1682 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1580 U ) X.U1683 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1581 A . X.A1684 0.014 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1582 A . X.A1685 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 1583 G ) X.G1686 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 1584 G ) X.G1687 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1585 U ) X.U1688 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1586 G ) X.G1689 0.031 turn,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1587 A . X.A1690 0.023 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1588 G . X.G1691 0.027 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate,splayed-apart 1589 C ( X.C1692 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,cap-donor,phosphate,splayed-apart 1590 G ( X.G1693 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 1591 A ( X.A1694 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1592 G ( X.G1695 0.030 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1593 C . X.C1696 0.016 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1594 G . X.G1697 0.022 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1595 A . X.A1698 0.023 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 1596 A . X.A1699 0.023 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1597 C ( X.C1700 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1598 U ( X.U1701 0.036 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack,phosphate 1599 C ( X.C1702 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1600 U ( X.U1703 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1601 C ( X.C1704 0.024 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1602 G ( X.G1705 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1603 U ( X.U1706 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1604 U ( X.U1707 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,ribose-zipper 1605 A . X.A1708 0.025 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,ribose-zipper,phosphate 1606 A ( X.A1709 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1607 G ( X.G1710 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 1608 G . X.G1711 0.033 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate 1609 A . X.A1712 0.016 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,bulge,cap-donor 1610 A ( X.A1713 0.017 turn,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop,cap-acceptor,phosphate 1611 C . X.C1714 0.008 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1612 U . X.U1715 0.017 u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate 1613 C . X.C1716 0.011 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor 1614 G . X.G1717 0.021 u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1615 G ( X.G1718 0.024 turn,u-turn,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor,phosphate,splayed-apart 1616 C . X.C1719 0.036 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 1617 A . X.A1720 0.020 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 1618 A . X.A1721 0.027 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 1619 A . X.A1722 0.020 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1620 A . X.A1723 0.030 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1621 U . X.U1724 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 1622 G . X.G1725 0.025 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1623 A ( X.A1726 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,cap-donor,phosphate,splayed-apart 1624 C ( X.C1727 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1625 C ( X.C1728 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1626 C ( X.C1729 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1627 C ( X.C1730 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1628 G . X.G1731 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1629 U . X.U1732 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1630 A . X.A1733 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1631 A . X.A1734 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1632 C ( X.C1735 0.015 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1633 U . X.U1736 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1634 U [ X.U1737 0.015 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 1635 C . X.C1738 0.009 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 1636 G . X.G1739 0.015 turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1637 G ) X.G1740 0.013 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1638 G . X.G1741 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1639 A . X.A1742 0.012 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 1640 G . X.G1743 0.015 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1641 A . X.A1744 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,phosphate,splayed-apart 1642 A . X.A1745 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,cap-acceptor,phosphate 1643 G ) X.G1746 0.041 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 1644 G ) X.G1747 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1645 G ) X.G1748 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1646 G ) X.G1749 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1647 U ) X.U1750 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,cap-acceptor,phosphate,splayed-apart 1648 G ( X.G1751 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 1649 C ( X.C1752 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 1650 U ( X.U1753 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,ribose-zipper 1651 C ( X.C1754 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1652 U ( X.U1755 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,bulge 1653 U . X.U1756 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,bulge 1654 U ( X.U1757 0.013 anti,~C2'-endo,isolated-canonical,non-pair-contact,bulge,internal-loop 1655 A . X.A1758 0.027 ~C3'-endo,BI,non-stack,non-pair-contact,internal-loop,phosphate 1656 G . X.G1759 0.020 syn,~C3'-endo,non-pair-contact,internal-loop 1657 G . X.G1760 0.013 ~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 1658 G ( X.G1761 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1659 U ( X.U1762 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 1660 U . X.U1763 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop 1661 A . X.A1764 0.008 turn,syn,~C3'-endo,non-stack,hairpin-loop 1662 A . X.A1765 0.011 syn,~C2'-endo,BI,non-pair-contact,hairpin-loop 1663 C . X.C1766 0.011 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 1664 G ) X.G1767 0.016 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 1665 C ) X.C1768 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 1666 C . X.C1769 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 1667 C . X.C1770 0.009 anti,~C2'-endo,BI,non-pair-contact,internal-loop 1668 A . X.A1771 0.015 anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate 1669 G . X.G1772 0.019 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1670 A ) X.A1773 0.015 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,bulge,internal-loop 1671 A ) X.A1774 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,bulge 1672 G ) X.G1775 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1673 A ) X.A1776 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet 1674 G ) X.G1777 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1675 C ) X.C1778 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1676 C ( X.C1779 0.016 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 1677 G . X.G1780 0.013 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor 1678 C . X.C1781 0.017 turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-acceptor,phosphate 1679 A . X.A1782 0.032 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart 1680 G ) X.G1783 0.009 u-turn,anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate,splayed-apart 1681 U . X.U1784 0.025 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,phosphate,splayed-apart 1682 G . X.G1785 0.016 turn,syn,~C2'-endo,non-stack,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 1683 A . X.A1786 0.035 anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,splayed-apart 1684 A . X.A1787 0.030 anti,~C3'-endo,non-pair-contact,junction-loop,A-minor 1685 U . X.U1788 0.010 anti,~C3'-endo,non-pair-contact,junction-loop 1686 A . X.A1789 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,splayed-apart 1687 G . X.G1790 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,phosphate,splayed-apart 1688 G ( X.G1791 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1689 C ( X.C1792 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1690 C ( X.C1793 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1691 C ( X.C1794 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1692 A ( X.A1795 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1693 A ( X.A1796 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1694 G ( X.G1797 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1695 C ( X.C1798 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1696 G ( X.G1799 0.022 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1697 A . X.A1800 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1698 C > X.C1801 0.014 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,phosphate 1699 U . X.U1802 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor,phosphate 1700 G ( X.G1803 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,cap-donor,phosphate 1701 U ( X.U1804 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-donor 1702 U . X.U1805 0.026 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-donor 1703 U . X.U1806 0.040 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 1704 A . X.A1807 0.008 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1705 U . X.U1808 0.017 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 1706 C . X.C1809 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,ribose-zipper,cap-donor,phosphate,splayed-apart 1707 A . X.A1810 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,ribose-zipper,phosphate 1708 A . X.A1811 0.026 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate 1709 A . X.A1812 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,splayed-apart 1710 A . X.A1813 0.018 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1711 A ) X.A1814 0.035 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1712 C ) X.C1815 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate 1713 A . X.A1816 0.010 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 1714 C . X.C1817 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate 1715 A . X.A1818 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 1716 G ( X.G1819 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,A-minor,phosphate 1717 G ( X.G1820 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1718 U ( X.U1821 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,cap-donor 1719 C ( X.C1822 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1720 U ( X.U1823 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1721 C ( X.C1824 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 1722 U ( X.U1825 0.015 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,A-minor,ribose-zipper 1723 G . X.G1826 0.021 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1724 C . X.C1827 0.023 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 1725 U . X.U1828 0.012 turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,splayed-apart 1726 A . X.A1829 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper,phosphate,splayed-apart 1727 A . X.A1830 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 1728 A ( X.A1831 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1729 C ( X.C1832 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1730 C ( X.C1833 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1731 G . X.G1834 0.019 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop 1732 U . X.U1835 0.014 turn,u-turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1733 A . X.A1836 0.015 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate,splayed-apart 1734 A . X.A1837 0.016 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 1735 G ) X.G1838 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1736 G ) X.G1839 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1737 U ) X.U1840 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 1738 G . X.G1841 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1739 A . X.A1842 0.022 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1740 U . X.U1843 0.020 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1741 G . X.G1844 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 1742 U . X.U1845 0.016 anti,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1743 A . X.A1846 0.011 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate,splayed-apart 1744 U . X.U1847 0.007 turn,anti,~C2'-endo,internal-loop,splayed-apart 1745 A ) X.A1848 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1746 G ) X.G1849 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1747 G ) X.G1850 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1748 G ) X.G1851 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1749 G ) X.G1852 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1750 C ) X.C1853 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate 1751 U ) X.U1854 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,A-minor,phosphate 1752 G . X.G1855 0.028 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate,splayed-apart 1753 A ] X.A1856 0.011 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,cap-acceptor,phosphate,splayed-apart 1754 C ( X.C1857 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-donor,phosphate 1755 G ( X.G1858 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1756 C ( X.C1859 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1757 C ( X.C1860 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor 1758 U . X.U1861 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,splayed-apart 1759 G . X.G1862 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate,splayed-apart 1760 C ( X.C1863 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1761 C ( X.C1864 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor 1762 C . X.C1865 0.019 break,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop 1763 G ( X.G1867 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet 1764 U ( X.U1868 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 1765 G ( X.G1869 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1766 C ( X.C1870 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1767 U ( X.U1871 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1768 G ( X.G1872 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1769 G ( X.G1873 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1770 A . X.A1874 0.017 anti,~C3'-endo,BI,non-pair-contact,bulge 1771 A . X.A1875 0.016 anti,~C3'-endo,BI,non-pair-contact,bulge 1772 G ( X.G1876 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1773 G ( X.G1877 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1774 U ( X.U1878 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1775 U . X.U1879 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1776 A . X.A1880 0.011 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,ribose-zipper 1777 A . X.A1881 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 1778 G ( X.G1882 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1779 A ( X.A1883 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1780 G . X.G1884 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1781 G . X.G1885 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1782 A . X.A1886 0.014 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1783 G . X.G1887 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1784 U ( X.U1888 0.002 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1785 G ( X.G1889 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1786 G ( X.G1890 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1787 U ( X.U1891 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1788 U . X.U1892 0.004 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1789 A . X.A1893 0.012 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1790 G . X.G1894 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1791 C ( X.C1895 0.003 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop 1792 U . X.U1896 0.003 break,anti,~C3'-endo,non-pair-contact,ss-non-loop 1793 G ) X.G1900 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 1794 C . X.C1901 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop 1795 G . X.G1902 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1796 A . X.A1903 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1797 A . X.A1904 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1798 G ) X.G1905 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1799 C ) X.C1906 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1800 U ) X.U1907 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1801 A ) X.A1908 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1802 C . X.C1909 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 1803 G . X.G1910 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1804 A . X.A1911 0.010 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1805 A . X.A1912 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1806 U ) X.U1913 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1807 C ) X.C1914 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1808 G . X.G1915 0.019 syn,~C3'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1809 A . X.A1916 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,ribose-zipper 1810 A . X.A1917 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 1811 G ) X.G1918 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1812 C ) X.C1919 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1813 C ) X.C1920 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1814 C ) X.C1921 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1815 C ) X.C1922 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1816 A ) X.A1923 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1817 G ) X.G1924 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1818 U ) X.U1925 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1819 A . X.A1926 0.011 anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate,splayed-apart 1820 A . X.A1927 0.015 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,cap-acceptor,splayed-apart 1821 A ) X.A1928 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,phosphate,splayed-apart 1822 C ) X.C1929 0.011 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet 1823 G ) X.G1930 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,phosphate 1824 G ) X.G1931 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1825 C . X.C1932 0.013 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 1826 G . X.G1933 0.005 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1827 G . X.G1934 0.015 break,anti,~C2'-endo,non-pair-contact,ss-non-loop 1828 C . X.C1952 0.007 anti,~C2'-endo,BII,non-pair-contact,ss-non-loop 1829 U . X.U1953 0.010 syn,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1830 A . X.A1954 0.020 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 1831 A . X.A1955 0.021 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,A-minor 1832 G . X.G1956 0.019 syn,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1833 G . X.G1957 0.032 anti,~C2'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,splayed-apart 1834 U . X.U1958 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,phosphate 1835 A . X.A1959 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1836 G ( X.G1960 0.013 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge 1837 C ( X.C1961 0.015 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,multiplet,bulge,internal-loop,A-minor 1838 G . X.G1962 0.013 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-donor 1839 A . X.A1963 0.015 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,phosphate 1840 A . X.A1964 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,splayed-apart 1841 A . X.A1965 0.018 turn,anti,~C2'-endo,non-pair-contact,internal-loop,A-minor,phosphate,splayed-apart 1842 U . X.U1966 0.018 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1843 U . X.U1967 0.023 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,phosphate 1844 C . X.C1968 0.017 anti,~C3'-endo,non-pair-contact,internal-loop 1845 C . X.C1969 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1846 U . X.U1970 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor,splayed-apart 1847 U . X.U1971 0.017 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1848 G ( X.G1972 0.029 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,cap-donor,splayed-apart 1849 U ( X.U1973 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1850 C ( X.C1974 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1851 G ( X.G1975 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1852 G ( X.G1976 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1853 G . X.G1977 0.023 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 1854 U . X.U1978 0.009 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,splayed-apart 1855 A . X.A1979 0.014 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,phosphate,splayed-apart 1856 A . X.A1980 0.013 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-donor,cap-acceptor,phosphate 1857 G . X.G1981 0.026 u-turn,anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1858 U . X.U1982 0.016 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,phosphate,splayed-apart 1859 U . X.U1983 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 1860 C ) X.C1984 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1861 C ) X.C1985 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1862 G ) X.G1986 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1863 A ) X.A1987 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1864 C ) X.C1988 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 1865 C . X.C1989 0.011 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 1866 C . X.C1990 0.009 turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart 1867 G ) X.G1991 0.015 turn,anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge,internal-loop,A-minor,phosphate,splayed-apart 1868 C . X.C1992 0.012 turn,anti,~C3'-endo,non-pair-contact,bulge,cap-donor,phosphate,splayed-apart 1869 A . X.A1993 0.015 anti,~C2'-endo,BII,non-pair-contact,bulge,A-minor,splayed-apart 1870 C ) X.C1994 0.009 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,splayed-apart 1871 G . X.G1995 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 1872 A . X.A1996 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,A-minor,cap-acceptor 1873 A . X.A1997 0.012 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,A-minor,phosphate,splayed-apart 1874 A . X.A1998 0.021 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1875 G ) X.G1999 0.024 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate,splayed-apart 1876 G ) X.G2000 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1877 C ) X.C2001 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1878 G ) X.G2002 0.024 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack 1879 U . X.U2003 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop 1880 A . X.A2004 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1881 A . X.A2005 0.028 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate 1882 C ) X.C2006 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1883 G ) X.G2007 0.014 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1884 A . X.A2008 0.019 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,cap-acceptor,splayed-apart 1885 U ) X.U2009 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1886 U ) X.U2010 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1887 U ) X.U2011 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1888 G ) X.G2012 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1889 G ) X.G2013 0.031 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1890 G ) X.G2014 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1891 C ) X.C2015 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1892 A . X.A2016 0.016 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1893 C ) X.C2017 0.022 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor 1894 U . X.U2018 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1895 G . X.G2019 0.022 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 1896 U ) X.U2020 0.009 turn,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 1897 C ) X.C2021 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 1898 U ) X.U2022 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1899 C . X.C2023 0.020 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1900 A ) X.A2024 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1901 A ) X.A2025 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1902 C ) X.C2026 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1903 G ) X.G2027 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1904 A ) X.A2028 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 1905 G ) X.G2029 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1906 A ) X.A2030 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1907 G ) X.G2031 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1908 A . X.A2032 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1909 C ) X.C2033 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1910 U ) X.U2034 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1911 C ) X.C2035 0.036 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 1912 G ) X.G2036 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 1913 G ) X.G2037 0.037 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1914 U ) X.U2038 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 1915 G . X.G2039 0.044 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1916 A . X.A2040 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1917 A . X.A2041 0.033 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1918 A . X.A2042 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1919 U . X.U2043 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1920 C ) X.C2044 0.025 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-acceptor,splayed-apart 1921 A ) X.A2045 0.031 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate,splayed-apart 1922 U . X.U2046 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 1923 A [ X.A2047 0.033 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,phosphate,splayed-apart 1924 G . X.G2048 0.033 turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1925 U . X.U2049 0.019 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 1926 A ( X.A2050 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate,splayed-apart 1927 C ( X.C2051 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 1928 C ( X.C2052 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,hairpin-loop,A-minor,cap-donor,phosphate 1929 U ( X.U2053 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop,A-minor,cap-donor,phosphate 1930 G ( X.G2054 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop,junction-loop,A-minor 1931 U . X.U2055 0.034 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,cap-donor 1932 G . X.G2056 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,junction-loop,phosphate,splayed-apart 1933 A . X.A2057 0.021 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-donor,phosphate,splayed-apart 1934 A . X.A2058 0.027 anti,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,A-minor,phosphate,splayed-apart 1935 G . X.G2059 0.020 anti,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,cap-acceptor,phosphate,splayed-apart 1936 A > X.A2060 0.023 pseudoknotted,anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,phosphate,splayed-apart 1937 U ] X.U2061 0.021 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,phosphate 1938 G . X.G2062 0.040 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,junction-loop,phosphate,splayed-apart 1939 C ) X.C2063 0.026 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,hairpin-loop,junction-loop,A-minor,ribose-zipper,cap-donor,splayed-apart 1940 A ) X.A2064 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper 1941 G ) X.G2065 0.027 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1942 G ) X.G2066 0.039 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1943 U ) X.U2067 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1944 U . X.U2068 0.034 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1945 A . X.A2069 0.022 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1946 C ( X.C2070 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate,splayed-apart 1947 C ( X.C2071 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1948 C ( X.C2072 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1949 G ( X.G2073 0.025 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1950 C ( X.C2074 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1951 G ( X.G2075 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1952 A ( X.A2076 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1953 C ( X.C2077 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1954 A . X.A2078 0.048 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge 1955 G ( X.G2079 0.045 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,phosphate 1956 G ( X.G2080 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1957 A ( X.A2081 0.040 turn,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop,phosphate,splayed-apart 1958 C . X.C2082 0.021 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart 1959 G ( X.G2083 0.024 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop,phosphate,splayed-apart 1960 G ( X.G2084 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate 1961 A . X.A2085 0.036 anti,~C3'-endo,non-pair-contact,junction-loop 1962 A . X.A2086 0.038 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1963 A . X.A2087 0.024 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate,splayed-apart 1964 G . X.G2088 0.026 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-donor,phosphate,splayed-apart 1965 A . X.A2089 0.046 turn,syn,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1966 C . X.C2090 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart 1967 C ( X.C2091 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1968 C ( X.C2092 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 1969 C ( X.C2093 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1970 G ( X.G2094 0.027 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,splayed-apart 1971 U . X.U2095 0.013 turn,anti,~C3'-endo,non-stack,non-canonical,bulge,cap-donor,cap-acceptor,phosphate,splayed-apart 1972 G ( X.G2096 0.025 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,splayed-apart 1973 G ( X.G2097 0.037 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1974 A ( X.A2098 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 1975 G ( X.G2099 0.016 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1976 C ( X.C2100 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 1977 U ( X.U2101 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,ribose-zipper,phosphate 1978 U . X.U2102 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart 1979 U . X.U2103 0.009 turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1980 A ( X.A2104 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper,phosphate,splayed-apart 1981 C ( X.C2105 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 1982 U ( X.U2106 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1983 G ( X.G2107 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1984 U ( X.U2108 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1985 A . X.A2109 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1986 G ( X.G2110 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1987 C ( X.C2111 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1988 C . X.C2112 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 1989 U ( X.U2113 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,ribose-zipper 1990 G ( X.G2114 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1991 A ( X.A2115 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1992 U ( X.U2116 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1993 A ( X.A2117 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1994 U ( X.U2118 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1995 U . X.U2119 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 1996 G ( X.G2120 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1997 A ( X.A2121 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1998 A ( X.A2122 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1999 A ( X.A2123 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2000 U . X.U2124 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2001 U . X.U2125 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2002 C ( X.C2126 0.012 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,internal-loop 2003 G . X.G2127 0.014 break,anti,~C2'-endo,non-pair-contact,ss-non-loop 2004 G ) X.G2217 0.016 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,internal-loop 2005 G . X.G2218 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 2006 C . X.C2219 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 2007 U ) X.U2220 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2008 U ) X.U2221 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2009 U ) X.U2222 0.004 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 2010 C ) X.C2223 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2011 U . X.U2224 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 2012 A . X.A2225 0.007 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 2013 A . X.A2226 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 2014 C . X.C2227 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 2015 C ( X.C2228 0.013 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,junction-loop 2016 C ( X.C2229 0.011 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2017 G . X.G2230 0.019 turn,anti,~C2'-endo,BII,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 2018 C . X.C2231 0.010 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2019 A ( X.A2232 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2020 C ( X.C2233 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2021 C ( X.C2234 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2022 A ( X.A2235 0.022 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2023 C ( X.C2236 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 2024 U . X.U2237 0.007 anti,~C2'-endo,non-pair-contact,hairpin-loop 2025 U . X.U2238 0.009 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate 2026 A . X.A2239 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor,phosphate,splayed-apart 2027 U . X.U2240 0.012 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2028 C . X.C2241 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 2029 G ) X.G2242 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2030 U ) X.U2243 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2031 G ) X.G2244 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2032 G ) X.G2245 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2033 U ) X.U2246 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2034 G . X.G2247 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2035 G ) X.G2248 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2036 G ) X.G2249 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2037 A . X.A2250 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 2038 G . X.G2251 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 2039 A . X.A2252 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 2040 C . X.C2253 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 2041 A . X.A2254 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 2042 G ) X.G2255 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2043 U ) X.U2256 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2044 G ) X.G2257 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2045 U ) X.U2258 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2046 C ) X.C2259 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper,phosphate 2047 A ) X.A2260 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,ribose-zipper 2048 A . X.A2261 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor 2049 G ) X.G2262 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2050 C ) X.C2263 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2051 G . X.G2264 0.030 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 2052 G . X.G2265 0.014 turn,syn,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2053 G ) X.G2266 0.022 turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2054 C ) X.C2267 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2055 A ) X.A2268 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2056 G ) X.G2269 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2057 U ) X.U2270 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate 2058 U . X.U2271 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,ss-non-loop,cap-donor,phosphate 2059 U . X.U2272 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart 2060 G ( X.G2273 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,splayed-apart 2061 A ( X.A2274 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2062 C ( X.C2275 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop,phosphate 2063 U . X.U2276 0.011 anti,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop,cap-acceptor,splayed-apart 2064 G . X.G2277 0.020 turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,kissing-loop,cap-donor,phosphate,splayed-apart 2065 G . X.G2278 0.039 anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop,cap-acceptor,phosphate,splayed-apart 2066 G . X.G2279 0.028 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,cap-donor,phosphate 2067 G . X.G2280 0.018 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,phosphate 2068 C . X.C2281 0.015 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop 2069 G [ X.G2282 0.010 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop 2070 G ) X.G2283 0.036 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop 2071 U ) X.U2284 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 2072 C ) X.C2285 0.015 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart 2073 G ( X.G2286 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-donor,splayed-apart 2074 C ( X.C2287 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,hairpin-loop,A-minor 2075 C ( X.C2288 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,multiplet,hairpin-loop,A-minor 2076 U ( X.U2289 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop,phosphate 2077 C ( X.C2290 0.016 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 2078 C ( X.C2291 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,ribose-zipper,kissing-loop 2079 U . X.U2292 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,kissing-loop,phosphate 2080 A . X.A2293 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,kissing-loop,cap-donor,phosphate 2081 A . X.A2294 0.023 turn,syn,~C3'-endo,non-stack,non-canonical,helix-end,multiplet,hairpin-loop,kissing-loop,cap-acceptor,splayed-apart 2082 A . X.A2295 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop,phosphate,splayed-apart 2083 A . X.A2296 0.021 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,cap-acceptor,phosphate,splayed-apart 2084 G . X.G2297 0.020 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop,phosphate 2085 G . X.G2298 0.045 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop 2086 U . X.U2299 0.030 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,ribose-zipper,kissing-loop 2087 A . X.A2300 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,A-minor,ribose-zipper,kissing-loop 2088 A . X.A2301 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,A-minor,kissing-loop,cap-acceptor,phosphate,splayed-apart 2089 C ] X.C2302 0.012 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,cap-acceptor,splayed-apart 2090 G ) X.G2303 0.026 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop,cap-donor,phosphate,splayed-apart 2091 G ) X.G2304 0.031 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate 2092 A ) X.A2305 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate 2093 G ) X.G2306 0.031 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 2094 G ) X.G2307 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 2095 C ) X.C2308 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,cap-donor 2096 G ( X.G2309 0.017 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 2097 C [ X.C2310 0.008 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart 2098 U ( X.U2311 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,A-minor 2099 C ( X.C2312 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,cap-donor 2100 A . X.A2313 0.019 turn,anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,cap-donor 2101 A . X.A2314 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor 2102 A . X.A2315 0.015 turn,anti,~C2'-endo,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart 2103 G ( X.G2316 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 2104 G ( X.G2317 0.033 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2105 U ( X.U2318 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2106 U ( X.U2319 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2107 C ( X.C2320 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate 2108 C ( X.C2321 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2109 C ( X.C2322 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 2110 U . X.U2323 0.008 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop 2111 C ( X.C2324 0.005 anti,~C3'-endo,BI,non-stack,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,junction-loop 2112 A . X.A2325 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2113 G ( X.G2326 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 2114 A ( X.A2327 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2115 A ( X.A2328 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2116 U ( X.U2329 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2117 G ( X.G2330 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 2118 G . X.G2331 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 2119 U . X.U2332 0.009 anti,~C3'-endo,non-stack,ss-non-loop 2120 U . X.U2333 0.017 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,phosphate 2121 G . X.G2334 0.014 break,syn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate 2122 A . X.A2336 0.004 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 2123 A . X.A2337 0.014 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 2124 A . X.A2338 0.024 ~C2'-endo,non-canonical,non-pair-contact,ss-non-loop 2125 U . X.U2339 0.015 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 2126 C ) X.C2340 0.010 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end 2127 A ) X.A2341 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2128 U ) X.U2342 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2129 U ) X.U2343 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2130 C ) X.C2344 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 2131 A . X.A2345 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 2132 U . X.U2346 0.009 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,splayed-apart 2133 A . X.A2347 0.020 ~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-acceptor 2134 G ) X.G2348 0.015 turn,syn,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,multiplet,internal-loop,junction-loop 2135 A . X.A2349 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop 2136 G ( X.G2350 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 2137 U ( X.U2351 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart 2138 G ] X.G2352 0.013 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,splayed-apart 2139 U [ X.U2353 0.007 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,junction-loop 2140 A . X.A2354 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,internal-loop,A-minor 2141 A [ X.A2355 0.031 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,internal-loop,phosphate 2142 A [ X.A2356 0.027 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop 2143 G [ X.G2357 0.010 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop 2144 G ) X.G2358 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,A-minor 2145 C ) X.C2359 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate 2146 A . X.A2360 0.009 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart 2147 U . X.U2361 0.016 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 2148 A . X.A2362 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart 2149 A . X.A2363 0.009 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,splayed-apart 2150 G ) X.G2364 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart 2151 G ) X.G2365 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2152 G ) X.G2366 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2153 A ) X.A2367 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2154 G ) X.G2368 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2155 C ) X.C2369 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2156 U ) X.U2370 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 2157 U . X.U2371 0.010 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,splayed-apart 2158 G . X.G2372 0.010 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 2159 A . X.A2373 0.013 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart 2160 C ( X.C2374 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 2161 U ( X.U2375 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2162 G ( X.G2376 0.027 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,cap-acceptor 2163 C ( X.C2377 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor,phosphate 2164 G . X.G2378 0.030 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2165 A . X.A2379 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2166 G ( X.G2380 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2167 A ( X.A2381 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2168 C ( X.C2382 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2169 C . X.C2383 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 2170 U . X.U2384 0.023 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2171 A . X.A2385 0.027 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2172 C { X.C2386 0.009 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,hairpin-loop,phosphate 2173 A . X.A2387 0.014 anti,~C3'-endo,non-pair-contact,hairpin-loop 2174 A . X.A2388 0.025 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 2175 G ) X.G2389 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2176 U ) X.U2390 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2177 C ) X.C2391 0.036 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2178 G . X.G2392 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2179 A . X.A2393 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 2180 G ) X.G2394 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 2181 C ) X.C2395 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2182 A ) X.A2396 0.019 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2183 G ) X.G2397 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2184 G . X.G2398 0.037 syn,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 2185 G ( X.G2399 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2186 U ( X.U2400 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2187 C ( X.C2401 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 2188 G . X.G2402 0.006 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 2189 A . X.A2403 0.015 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2190 A . X.A2404 0.011 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 2191 A . X.A2405 0.005 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 2192 G ) X.G2406 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2193 A ) X.A2407 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2194 C ) X.C2408 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2195 G . X.G2409 0.011 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart 2196 G ) X.G2410 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 2197 A ) X.A2411 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,A-minor,phosphate,splayed-apart 2198 C ] X.C2412 0.008 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 2199 U ] X.U2413 0.015 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2200 U ] X.U2414 0.012 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 2201 A . X.A2415 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor 2202 G ] X.G2416 0.025 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,splayed-apart 2203 U . X.U2417 0.020 anti,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,splayed-apart 2204 G . X.G2418 0.023 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor 2205 A . X.A2419 0.048 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 2206 U . X.U2420 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2207 C . X.C2421 0.022 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 2208 C ( X.C2422 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2209 G ( X.G2423 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2210 G ( X.G2424 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2211 U ( X.U2425 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2212 G ( X.G2426 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2213 G ( X.G2427 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2214 U ( X.U2428 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 2215 U . X.U2429 0.011 turn,anti,~C3'-endo,BI,non-stack,bulge,splayed-apart 2216 C ( X.C2430 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2217 C ( X.C2431 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,phosphate 2218 G . X.G2432 0.014 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop,splayed-apart 2219 C . X.C2433 0.012 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,kissing-loop,phosphate,splayed-apart 2220 A ] X.A2434 0.017 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,phosphate,splayed-apart 2221 U ] X.U2435 0.007 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop 2222 G ] X.G2436 0.017 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,hairpin-loop,kissing-loop 2223 G ] X.G2437 0.010 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 2224 A . X.A2438 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 2225 A . X.A2439 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 2226 G ) X.G2440 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 2227 G ) X.G2441 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2228 G ) X.G2442 0.028 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 2229 C ) X.C2443 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 2230 C ) X.C2444 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2231 A ) X.A2445 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2232 U ) X.U2446 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2233 C ) X.C2447 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2234 G ) X.G2448 0.026 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2235 C . X.C2449 0.021 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 2236 U . X.U2450 0.010 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart 2237 C . X.C2451 0.009 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 2238 A . X.A2452 0.019 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2239 A . X.A2453 0.011 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 2240 C ) X.C2454 0.010 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2241 G } X.G2455 0.016 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,cap-donor,phosphate,splayed-apart 2242 G . X.G2456 0.037 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-acceptor,phosphate,splayed-apart 2243 A . X.A2457 0.022 ~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2244 U . X.U2458 0.013 u-turn,anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,ss-non-loop,cap-acceptor 2245 A . X.A2459 0.013 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate 2246 A . X.A2460 0.011 u-turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,ribose-zipper,cap-donor,phosphate 2247 A . X.A2461 0.020 u-turn,anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 2248 A ) X.A2462 0.024 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet 2249 G ) X.G2463 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2250 C ) X.C2464 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2251 U ) X.U2465 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,splayed-apart 2252 A . X.A2466 0.017 turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart 2253 C . X.C2467 0.020 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,phosphate,splayed-apart 2254 C ) X.C2468 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2255 C ) X.C2469 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,ribose-zipper 2256 C ) X.C2470 0.025 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,ribose-zipper 2257 G ) X.G2471 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2258 G ) X.G2472 0.027 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 2259 G ) X.G2473 0.030 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2260 G . X.G2474 0.044 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 2261 A . X.A2475 0.027 turn,anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 2262 U . X.U2476 0.015 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop 2263 A . X.A2477 0.024 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-donor,phosphate 2264 A . X.A2478 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate 2265 C . X.C2479 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate 2266 A ( X.A2480 0.025 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge,junction-loop,A-minor 2267 G ( X.G2481 0.030 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,cap-donor 2268 G ( X.G2482 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor 2269 C ( X.C2483 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2270 U ( X.U2484 0.039 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,ribose-zipper 2271 U . X.U2485 0.013 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge 2272 A ( X.A2486 0.007 turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop,cap-donor 2273 U . X.U2487 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 2274 C ( X.C2488 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2275 U ( X.U2489 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2276 C ( X.C2490 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2277 C ( X.C2491 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2278 C ( X.C2492 0.024 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2279 C ( X.C2493 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2280 C . X.C2494 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2281 A . X.A2495 0.013 anti,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2282 A . X.A2496 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate 2283 G ( X.G2497 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2284 A ( X.A2498 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2285 G . X.G2499 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 2286 U . X.U2500 0.013 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2287 U . X.U2501 0.010 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 2288 C . X.C2502 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2289 A . X.A2503 0.013 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 2290 C . X.C2504 0.015 anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2291 A . X.A2505 0.007 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 2292 U ) X.U2506 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 2293 C ) X.C2507 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2294 G . X.G2508 0.026 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 2295 A . X.A2509 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2296 C . X.C2510 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2297 G ) X.G2511 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2298 G ) X.G2512 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2299 G ) X.G2513 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper,phosphate 2300 G ) X.G2514 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2301 A ) X.A2515 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2302 G ) X.G2516 0.020 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2303 G . X.G2517 0.021 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 2304 U . X.U2518 0.010 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 2305 U . X.U2519 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 2306 U ) X.U2520 0.012 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 2307 G ) X.G2521 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 2308 G ) X.G2522 0.033 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2309 C ) X.C2523 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,phosphate 2310 A . X.A2524 0.031 anti,~C2'-endo,BII,non-pair-contact,bulge,phosphate 2311 C ) X.C2525 0.021 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,phosphate 2312 C . X.C2526 0.020 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate 2313 U ) X.U2527 0.019 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,phosphate 2314 C . X.C2528 0.019 anti,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart 2315 G . X.G2529 0.056 turn,anti,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 2316 A . X.A2530 0.038 syn,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 2317 U . X.U2531 0.021 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate,splayed-apart 2318 G . X.G2532 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 2319 U . X.U2533 0.019 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,phosphate,splayed-apart 2320 C ( X.C2534 0.010 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,junction-loop,splayed-apart 2321 G ( X.G2535 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2322 G ( X.G2536 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2323 C ( X.C2537 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2324 U . X.U2538 0.042 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2325 C ( X.C2539 0.013 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,phosphate 2326 A ( X.A2540 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2327 U ( X.U2541 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2328 C ( X.C2542 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2329 G ( X.G2543 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2330 C ( X.C2544 0.010 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 2331 A . X.A2545 0.029 turn,syn,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 2332 U . X.U2546 0.041 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart 2333 C ( X.C2547 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 2334 C ( X.C2548 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2335 U ( X.U2549 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2336 G ( X.G2550 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor 2337 G ( X.G2551 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2338 G ( X.G2552 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2339 G ( X.G2553 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2340 C ( X.C2554 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2341 U ( X.U2555 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor,splayed-apart 2342 G . X.G2556 0.011 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2343 U . X.U2557 0.016 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 2344 A . X.A2558 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,splayed-apart 2345 G . X.G2559 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate 2346 U . X.U2560 0.007 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 2347 C . X.C2561 0.014 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2348 G ) X.G2562 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 2349 G ) X.G2563 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2350 U ) X.U2564 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2351 C ) X.C2565 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2352 C ) X.C2566 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2353 C ) X.C2567 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,ribose-zipper 2354 A . X.A2568 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,bulge 2355 A . X.A2569 0.018 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge 2356 G ) X.G2570 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor 2357 G ) X.G2571 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2358 G ) X.G2572 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 2359 U . X.U2573 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,splayed-apart 2360 U ( X.U2574 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 2361 G ( X.G2575 0.022 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,A-minor 2362 G ( X.G2576 0.023 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor,phosphate 2363 G ( X.G2577 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,cap-donor,phosphate 2364 C ( X.C2578 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2365 U . X.U2579 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-acceptor 2366 G . X.G2580 0.023 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-acceptor 2367 U . X.U2581 0.017 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor 2368 U . X.U2582 0.010 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2369 C . X.C2583 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop 2370 G ) X.G2584 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2371 C ) X.C2585 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2372 C ) X.C2586 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 2373 C ) X.C2587 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper 2374 A ) X.A2588 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 2375 U . X.U2589 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 2376 U . X.U2590 0.026 u-turn,anti,~C3'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate 2377 A . X.A2591 0.032 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,A-minor,ribose-zipper,cap-acceptor,phosphate 2378 A . X.A2592 0.018 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,ribose-zipper,cap-donor,phosphate 2379 A . X.A2593 0.011 turn,u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 2380 G ) X.G2594 0.024 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,phosphate,splayed-apart 2381 C ) X.C2595 0.035 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2382 G ) X.G2596 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2383 G ) X.G2597 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor,phosphate 2384 U ) X.U2598 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-acceptor,splayed-apart 2385 A . X.A2599 0.032 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate,splayed-apart 2386 C . X.C2600 0.012 turn,anti,~C3'-endo,non-stack,non-pair-contact,bulge,phosphate,splayed-apart 2387 G ) X.G2601 0.016 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,cap-donor,phosphate,splayed-apart 2388 C . X.C2602 0.024 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2389 G . X.G2603 0.046 syn,~C3'-endo,BII,non-pair-contact,internal-loop,phosphate,splayed-apart 2390 A . X.A2604 0.044 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart 2391 G ) X.G2605 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 2392 C ) X.C2606 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2393 U ) X.U2607 0.022 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2394 G . X.G2608 0.020 syn,~C2'-endo,non-pair-contact,bulge,phosphate 2395 G ) X.G2609 0.030 turn,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,junction-loop,cap-donor,phosphate 2396 G . X.G2610 0.016 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-donor,phosphate 2397 U . X.U2611 0.020 anti,~C3'-endo,non-pair-contact,junction-loop 2398 U . X.U2612 0.012 anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 2399 C . X.C2613 0.014 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 2400 A . X.A2614 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 2401 G ( X.G2615 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 2402 A ( X.A2616 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate 2403 A ( X.A2617 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2404 C ( X.C2618 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2405 G ( X.G2619 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,phosphate 2406 U ( X.U2620 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2407 C ( X.C2621 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2408 G . X.G2622 0.015 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,splayed-apart 2409 U . X.U2623 0.016 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 2410 G . X.G2624 0.017 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate 2411 A . X.A2625 0.019 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 2412 G ) X.G2626 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 2413 A ) X.A2627 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2414 C ) X.C2628 0.010 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor 2415 A . X.A2629 0.006 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate 2416 G ) X.G2630 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2417 U ) X.U2631 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2418 U ) X.U2632 0.029 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2419 C ) X.C2633 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 2420 G . X.G2634 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 2421 G . X.G2635 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper,splayed-apart 2422 U a X.U2636 0.008 pseudoknotted,anti,~C2'-endo,non-stack,isolated-canonical,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 2423 C . X.C2637 0.021 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 2424 C ) X.C2638 0.017 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 2425 C ) X.C2639 0.029 anti,~C3'-endo,BII,canonical,non-pair-contact,helix-end,stem-end,internal-loop,splayed-apart 2426 U . X.U2640 0.021 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,splayed-apart 2427 A . X.A2641 0.027 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2428 U ) X.U2642 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 2429 C ) X.C2643 0.021 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,cap-donor 2430 C ) X.C2644 0.024 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2431 G ) X.G2645 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2432 U ) X.U2646 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2433 C ) X.C2647 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2434 G ) X.G2648 0.037 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2435 U ) X.U2649 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2436 G ) X.G2650 0.021 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2437 G ) X.G2651 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2438 G ) X.G2652 0.028 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,cap-donor 2439 C [ X.C2653 0.017 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet 2440 G . X.G2654 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 2441 U . X.U2655 0.019 anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2442 A . X.A2656 0.012 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 2443 G ( X.G2657 0.023 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper,splayed-apart 2444 G ( X.G2658 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2445 A ( X.A2659 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2446 A ( X.A2660 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2447 A ( X.A2661 0.035 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2448 U ( X.U2662 0.025 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2449 U ( X.U2663 0.022 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2450 U . X.U2664 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2451 G . X.G2665 0.018 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2452 A . X.A2666 0.033 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2453 G ( X.G2667 0.036 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2454 A ( X.A2668 0.031 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2455 G ( X.G2669 0.034 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2456 G ( X.G2670 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2457 A . X.A2671 0.023 anti,~C3'-endo,BI,non-pair-contact,junction-loop 2458 G . X.G2672 0.025 anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 2459 C ( X.C2673 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 2460 U ( X.U2674 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor,phosphate 2461 G ( X.G2675 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2462 U ( X.U2676 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2463 C ( X.C2677 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2464 C ( X.C2678 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2465 U ( X.U2679 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2466 U . X.U2680 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2467 A . X.A2681 0.014 anti,~C2'-endo,BII,non-pair-contact,internal-loop 2468 G . X.G2682 0.016 turn,anti,non-pair-contact,internal-loop 2469 U . X.U2683 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2470 A . X.A2684 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2471 C ( X.C2685 0.007 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,A-minor 2472 G . X.G2686 0.026 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-acceptor 2473 A . X.A2687 0.011 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2474 G . X.G2688 0.015 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 2475 A . X.A2689 0.013 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,phosphate 2476 G ) X.G2690 0.008 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,A-minor 2477 G . X.G2691 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2478 A . X.A2692 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2479 C . X.C2693 0.013 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2480 C . X.C2694 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2481 G ) X.G2695 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2482 G ) X.G2696 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2483 G ) X.G2697 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2484 A ) X.A2698 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2485 U ) X.U2699 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2486 G ) X.G2700 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2487 G ) X.G2701 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2488 A . X.A2702 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 2489 C ( X.C2703 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2490 A ( X.A2704 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2491 U ( X.U2705 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2492 A ( X.A2706 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2493 C ( X.C2707 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2494 C . X.C2708 0.030 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop 2495 U . X.U2709 0.037 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,phosphate 2496 C . X.C2710 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 2497 U ( X.U2711 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 2498 G ( X.G2712 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper,phosphate 2499 G ( X.G2713 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 2500 U ( X.U2714 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2501 G . X.G2715 0.030 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2502 U . X.U2716 0.034 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2503 A . X.A2717 0.015 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 2504 C ( X.C2718 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2505 C ( X.C2719 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2506 A ( X.A2720 0.031 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2507 G ( X.G2721 0.019 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2508 U ( X.U2722 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor 2509 U ( X.U2723 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor 2510 G ( X.G2724 0.033 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2511 U ( X.U2725 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2512 C ( X.C2726 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2513 G ( X.G2727 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2514 U ( X.U2728 0.023 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart 2515 G . X.G2729 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2516 C } X.C2730 0.010 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop 2517 C . X.C2731 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 2518 A . X.A2732 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 2519 A ) X.A2733 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2520 C ) X.C2734 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2521 G ) X.G2735 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2522 G ) X.G2736 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2523 C ) X.C2737 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2524 A ) X.A2738 0.043 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,cap-acceptor,phosphate,splayed-apart 2525 U . X.U2739 0.015 anti,~C2'-endo,non-stack,non-pair-contact,bulge,cap-acceptor,phosphate,splayed-apart 2526 A . X.A2740 0.072 turn,anti,~C2'-endo,non-pair-contact,bulge,cap-acceptor,splayed-apart 2527 G ) X.G2741 0.021 turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor,phosphate,splayed-apart 2528 C ) X.C2742 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,cap-donor,phosphate 2529 U ) X.U2743 0.019 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2530 G ) X.G2744 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 2531 G ) X.G2745 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2532 G . X.G2746 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2533 U . X.U2747 0.026 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2534 A . X.A2748 0.029 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2535 G ) X.G2749 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2536 C ) X.C2750 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2537 U ) X.U2751 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2538 A ) X.A2752 0.031 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2539 U . X.U2753 0.013 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 2540 G ) X.G2754 0.021 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2541 U ) X.U2755 0.029 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2542 G ) X.G2756 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2543 U ) X.U2757 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2544 G ) X.G2758 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 2545 G . X.G2759 0.015 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 2546 A . X.A2760 0.027 anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 2547 C . X.C2761 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2548 G ( X.G2762 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2549 G ( X.G2763 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2550 G ( X.G2764 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2551 A . X.A2765 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2552 U . X.U2766 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2553 A . X.A2767 0.014 anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 2554 A . X.A2768 0.029 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 2555 G ( X.G2769 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2556 U ( X.U2770 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2557 G ( X.G2771 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2558 C ( X.C2772 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2559 U . X.U2773 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop 2560 G . X.G2774 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 2561 A . X.A2775 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 2562 A . X.A2776 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 2563 A . X.A2777 0.015 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2564 G } X.G2778 0.010 pseudoknotted,turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 2565 C . X.C2779 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 2566 A . X.A2780 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 2567 U . X.U2781 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 2568 C . X.C2782 0.010 turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2569 U . X.U2783 0.018 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 2570 A . X.A2784 0.015 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 2571 A . X.A2785 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop 2572 G ) X.G2786 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2573 C ) X.C2787 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2574 A ) X.A2788 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2575 U ) X.U2789 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2576 G . X.G2790 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop 2577 A . X.A2791 0.022 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor 2578 A . X.A2792 0.027 turn,syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2579 G . X.G2793 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2580 C ) X.C2794 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2581 C ) X.C2795 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2582 C ) X.C2796 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2583 C . X.C2797 0.017 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2584 C ) X.C2798 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2585 C ) X.C2799 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2586 U ) X.U2800 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2587 C ) X.C2801 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2588 A . X.A2802 0.022 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2589 A . X.A2803 0.033 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2590 G ] X.G2804 0.016 pseudoknotted,turn,anti,~C3'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 2591 A . X.A2805 0.025 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,splayed-apart 2592 U . X.U2806 0.029 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,ribose-zipper,cap-donor,phosphate,splayed-apart 2593 G . X.G2807 0.020 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,ribose-zipper,phosphate,splayed-apart 2594 A . X.A2808 0.024 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart 2595 G ) X.G2809 0.021 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 2596 A ) X.A2810 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2597 U ) X.U2811 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2598 U ) X.U2812 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2599 U ) X.U2813 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2600 C ) X.C2814 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2601 C ) X.C2815 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper 2602 C ( X.C2816 0.022 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop 2603 A ( X.A2817 0.012 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 2604 A ( X.A2818 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2605 C ( X.C2819 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 2606 U . X.U2820 0.017 anti,~C3'-endo,non-pair-contact,ss-non-loop 2607 U . X.U2821 0.008 break,anti,~C2'-endo,non-stack,ss-non-loop 2608 G . X.G2823 0.010 anti,~C3'-endo,non-pair-contact,ss-non-loop 2609 G ) X.G2824 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate 2610 U ) X.U2825 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2611 U ) X.U2826 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2612 A . X.A2827 0.024 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2613 U . X.U2828 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop 2614 A . X.A2829 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,A-minor,ribose-zipper,phosphate 2615 A . X.A2830 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper,phosphate 2616 G ( X.G2831 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 2617 A ( X.A2832 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2618 U ( X.U2833 0.032 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2619 C ( X.C2834 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2620 C ( X.C2835 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2621 C ( X.C2836 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2622 U ( X.U2837 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2623 C ( X.C2838 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2624 A ( X.A2839 0.033 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2625 A . X.A2840 0.016 turn,anti,~C2'-endo,non-stack,hairpin-loop,phosphate,splayed-apart 2626 A . X.A2841 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2627 G . X.G2842 0.028 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2628 A . X.A2843 0.028 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart 2629 U . X.U2844 0.041 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 2630 G . X.G2845 0.096 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 2631 A . X.A2846 0.027 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-donor 2632 U ) X.U2847 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2633 G ) X.G2848 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2634 A ) X.A2849 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2635 G ) X.G2850 0.024 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2636 G ) X.G2851 0.030 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 2637 U . X.U2852 0.012 anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 2638 U . X.U2853 0.015 turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart 2639 A . X.A2854 0.030 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart 2640 A . X.A2855 0.017 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 2641 U ( X.U2856 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 2642 A ( X.A2857 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2643 G ( X.G2858 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2644 G ( X.G2859 0.027 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2645 U ( X.U2860 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2646 U ( X.U2861 0.028 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2647 C ( X.C2862 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2648 G ( X.G2863 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2649 A . X.A2864 0.016 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2650 G ( X.G2865 0.024 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2651 G ( X.G2866 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2652 U ( X.U2867 0.008 anti,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2653 G . X.G2868 0.021 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 2654 G . X.G2869 0.005 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate,splayed-apart 2655 A . X.A2870 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,cap-acceptor,phosphate,splayed-apart 2656 A . X.A2871 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 2657 G ( X.G2872 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 2658 C ( X.C2873 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2659 A ( X.A2874 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2660 U ( X.U2875 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2661 G ( X.G2876 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2662 G . X.G2877 0.014 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor 2663 U . X.U2878 0.009 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 2664 G . X.G2879 0.019 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate 2665 A . X.A2880 0.012 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 2666 C ) X.C2881 0.024 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2667 A ) X.A2882 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2668 U ) X.U2883 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2669 G ) X.G2884 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2670 U ) X.U2885 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 2671 G . X.G2886 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor,splayed-apart 2672 G . X.G2887 0.021 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2673 A . X.A2888 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-donor,cap-acceptor,phosphate 2674 G ) X.G2889 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 2675 C ) X.C2890 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2676 U ) X.U2891 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2677 G . X.G2892 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 2678 A . X.A2893 0.036 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2679 C ) X.C2894 0.026 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2680 G ) X.G2895 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2681 A ) X.A2896 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2682 A ) X.A2897 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2683 U ) X.U2898 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2684 A . X.A2899 0.016 turn,syn,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate 2685 C ) X.C2900 0.015 turn,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2686 U ) X.U2901 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2687 A ) X.A2902 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,phosphate 2688 A . X.A2903 0.019 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,splayed-apart 2689 U . X.U2904 0.026 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 2690 C . X.C2905 0.011 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor 2691 G ) X.G2906 0.031 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor 2692 A ) X.A2907 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2693 U ) X.U2908 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2694 C ) X.C2909 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2695 G . X.G2910 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,ribose-zipper 2696 A . X.A2911 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper 2697 A . X.A2912 0.011 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 2698 G ) X.G2913 0.029 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 2699 A ) X.A2914 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,splayed-apart 2700 C ) X.C2915 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2701 U ) X.U2916 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2702 U ) X.U2917 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2703 A ) X.A2918 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2704 A ) X.A2919 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end 2705 U . X.U2920 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop 2706 U . Y.U1 0.015 anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop 2707 C ( Y.C2 0.019 anti,~C3'-endo,BI,non-stack,isolated-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2708 U . Y.U3 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2709 G . Y.G4 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2710 G ( Y.G5 0.013 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop 2711 U . Y.U6 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2712 G . Y.G7 0.043 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2713 A ( Y.A8 0.010 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 2714 C . Y.C9 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 2715 U . Y.U10 0.010 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 2716 A . Y.A11 0.008 turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 2717 U . Y.U12 0.013 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 2718 A . Y.A13 0.013 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2719 G ( Y.G14 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2720 C ( Y.C15 0.025 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2721 A ( Y.A16 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2722 A ( Y.A17 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2723 G . Y.G18 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2724 G ( Y.G19 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2725 A ( Y.A20 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2726 G . Y.G21 0.030 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2727 G . Y.G22 0.018 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,A-minor 2728 U . Y.U23 0.010 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 2729 C . Y.C24 0.010 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate,splayed-apart 2730 A . Y.A25 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor 2731 C . Y.C26 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 2732 A ( Y.A27 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 2733 C ( Y.C28 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,phosphate 2734 C ( Y.C29 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 2735 U ( Y.U30 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2736 G ( Y.G31 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2737 U ( Y.U32 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2738 U . Y.U33 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2739 C . Y.C34 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 2740 C . Y.C35 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 2741 C ( Y.C36 0.003 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop 2742 A . Y.A37 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 2743 U . Y.U38 0.009 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart 2744 G . Y.G39 0.012 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2745 C . Y.C40 0.008 anti,~C3'-endo,non-pair-contact,hairpin-loop 2746 C . Y.C41 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 2747 G ) Y.G42 0.016 turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,internal-loop,phosphate,splayed-apart 2748 A . Y.A43 0.010 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2749 A . Y.A44 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2750 C . Y.C45 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 2751 A ) Y.A46 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 2752 C ) Y.C47 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2753 A ) Y.A48 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2754 G ) Y.G49 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 2755 A . Y.A50 0.009 anti,~C2'-endo,BII,non-pair-contact,bulge 2756 A . Y.A51 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge,A-minor 2757 G ) Y.G52 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 2758 U ) Y.U53 0.015 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 2759 U . Y.U54 0.002 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 2760 A . Y.A55 0.012 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 2761 A . Y.A56 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 2762 G . Y.G57 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 2763 G . Y.G58 0.056 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor 2764 U ) Y.U59 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2765 C ) Y.C60 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2766 U . Y.U61 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2767 U ) Y.U62 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2768 U ) Y.U63 0.012 anti,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2769 A . Y.A64 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,bulge 2770 G ) Y.G65 0.018 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2771 C ) Y.C66 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2772 G . Y.G67 0.013 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2773 A . Y.A68 0.048 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 2774 C . Y.C69 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2775 G . Y.G70 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2776 A . Y.A71 0.021 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 2777 U . Y.U72 0.017 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2778 G . Y.G73 0.024 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2779 G . Y.G74 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2780 U . Y.U75 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 2781 A . Y.A76 0.027 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 2782 G . Y.G77 0.021 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 2783 C . Y.C78 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2784 C . Y.C79 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2785 A . Y.A80 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2786 A . Y.A81 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2787 C . Y.C82 0.031 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2788 U . Y.U83 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2789 U . Y.U84 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2790 A . Y.A85 0.018 turn,anti,~C2'-endo,non-pair-contact,internal-loop 2791 C . Y.C86 0.041 ~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 2792 G . Y.G87 0.033 turn,syn,~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 2793 U . Y.U88 0.023 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2794 U . Y.U89 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2795 C . Y.C90 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2796 C . Y.C91 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2797 G . Y.G92 0.045 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2798 C . Y.C93 0.040 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2799 U . Y.U94 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2800 A . Y.A95 0.028 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2801 G . Y.G96 0.031 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop 2802 A . Y.A97 0.027 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2803 G . Y.G98 0.047 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2804 U . Y.U99 0.030 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2805 A . Y.A100 0.017 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 2806 G . Y.G101 0.029 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2807 A . Y.A102 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2808 A . Y.A103 0.029 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2809 C . Y.C104 0.015 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2810 G . Y.G105 0.029 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2811 U . Y.U106 0.020 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 2812 U ) Y.U107 0.012 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 2813 G . Y.G108 0.031 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2814 C . Y.C109 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2815 C ) Y.C110 0.012 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 2816 A . Y.A111 0.016 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2817 G . Y.G112 0.024 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2818 G ) Y.G113 0.014 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 2819 C . Y.C114 0.016 syn,~C3'-endo,non-pair-contact,ss-non-loop **************************************************************************** List of 17 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-multiplets.pdb -- an ensemble of multiplets 3 dssr-stems.pdb -- an ensemble of stems 4 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 5 dssr-hairpins.pdb -- an ensemble of hairpin loops 6 dssr-bulges.pdb -- an ensemble of bulges 7 dssr-iloops.pdb -- an ensemble of internal loops 8 dssr-junctions.pdb -- an ensemble of junctions (multi-branch) 9 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 10 dssr-2ndstrs.ct -- secondary structure in connectivity table format 11 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 12 dssr-torsions.txt -- backbone torsion angles and suite names 13 dssr-splays.pdb -- an ensemble of splayed-apart units 14 dssr-Aminors.pdb -- an ensemble of A minor motifs (types I and II) 15 dssr-Kturns.pdb -- an ensemble of kink-turn motifs 16 dssr-stacks.pdb -- an ensemble of base stacks 17 dssr-atom2bases.pdb -- an ensemble of atom-base stacking interactions