Summary information and primary citation

PDB-id
4yov; DSSR-derived features in text and JSON formats
Class
hydrolase-DNA
Method
X-ray (2.05 Å)
Summary
Crystal structure of a trimeric exonuclease phoexo i from pyrococcus horikoshii ot3 in complex with poly-da
Reference
Miyazono K, Ishino S, Tsutsumi K, Ito T, Ishino Y, Tanokura M (2015): "Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I." Nucleic Acids Res., 43, 7122-7136. doi: 10.1093/nar/gkv654.
Abstract
Nucleases play important roles in nucleic acid processes, such as replication, repair and recombination. Recently, we identified a novel single-strand specific 3'-5' exonuclease, PfuExo I, from the hyperthermophilic archaeon Pyrococcus furiosus, which may be involved in the Thermococcales-specific DNA repair system. PfuExo I forms a trimer and cleaves single-stranded DNA at every two nucleotides. Here, we report the structural basis for the cleavage mechanism of this novel exonuclease family. A structural analysis of PhoExo I, the homologous enzyme from P. horikoshii OT3, showed that PhoExo I utilizes an RNase H-like active site and possesses a 3'-OH recognition site ∼9 Å away from the active site, which enables cleavage at every two nucleotides. Analyses of the heterotrimeric and monomeric PhoExo I activities showed that trimerization is indispensable for its processive cleavage mechanism, but only one active site of the trimer is required.

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