**************************************************************************** Note: By default, each nucleotide is identified by chainId.name#. So a common case would be B.A1689, meaning adenosine #1689 on chain B. One-letter base names for modified nucleotides are put in lower case (e.g., 'c' for 5MC). For further information about the output notation, please refer to the DSSR User Manual. Questions and suggestions are *always* welcome on the 3DNA Forum. Command: x3dna-dssr -i=4x23.pdb -o=4x23.out File name: 4x23.pdb no. of DNA/RNA chains: 4 [I=146,J=146,S=146,T=146] no. of nucleotides: 584 no. of atoms: 23974 no. of waters: 0 no. of metals: 0 **************************************************************************** List of 297 base pairs nt1 nt2 bp name Saenger LW DSSR 1 I.DT2 J.DA146 T+A Hoogsteen 23-XXIII cHW cM+W 2 I.DC3 J.DG145 C-G WC 19-XIX cWW cW-W 3 I.DG4 J.DC144 G-C WC 19-XIX cWW cW-W 4 I.DA5 J.DT143 A-T WC 20-XX cWW cW-W 5 I.DG6 J.DC142 G-C WC 19-XIX cWW cW-W 6 I.DA7 J.DT141 A-T WC 20-XX cWW cW-W 7 I.DA8 J.DT140 A-T WC 20-XX cWW cW-W 8 I.DT9 J.DA139 T-A WC 20-XX cWW cW-W 9 I.DC10 J.DG138 C-G WC 19-XIX cWW cW-W 10 I.DC11 J.DG137 C-G WC 19-XIX cWW cW-W 11 I.DC12 J.DG136 C-G WC 19-XIX cWW cW-W 12 I.DG13 J.DC135 G-C WC 19-XIX cWW cW-W 13 I.DG14 J.DC134 G-C WC 19-XIX cWW cW-W 14 I.DT15 J.DA133 T-A WC 20-XX cWW cW-W 15 I.DG16 J.DC132 G-C WC 19-XIX cWW cW-W 16 I.DC17 J.DG131 C-G WC 19-XIX cWW cW-W 17 I.DC18 J.DG130 C-G WC 19-XIX cWW cW-W 18 I.DG19 J.DC129 G-C WC 19-XIX cWW cW-W 19 I.DA20 J.DT128 A-T WC 20-XX cWW cW-W 20 I.DG21 J.DC127 G-C WC 19-XIX cWW cW-W 21 I.DG22 J.DC126 G-C WC 19-XIX cWW cW-W 22 I.DG22 J.DC127 G-C -- -- cWW cW-W 23 I.DC23 J.DG125 C-G WC 19-XIX cWW cW-W 24 I.DC24 J.DG124 C-G WC 19-XIX cWW cW-W 25 I.DG25 J.DC123 G-C WC 19-XIX cWW cW-W 26 I.DC26 J.DG122 C-G WC 19-XIX cWW cW-W 27 I.DT27 J.DA121 T-A WC 20-XX cWW cW-W 28 I.DC28 J.DG120 C-G WC 19-XIX cWW cW-W 29 I.DA29 J.DT119 A-T WC 20-XX cWW cW-W 30 I.DA30 J.DT118 A-T WC 20-XX cWW cW-W 31 I.DT31 J.DA117 T-A WC 20-XX cWW cW-W 32 I.DT32 J.DA116 T-A WC 20-XX cWW cW-W 33 I.DG33 J.DC115 G-C WC 19-XIX cWW cW-W 34 I.DG34 J.DC114 G-C WC 19-XIX cWW cW-W 35 I.DT35 J.DA113 T-A WC 20-XX cWW cW-W 36 I.DC36 J.DG112 C-G WC 19-XIX cWW cW-W 37 I.DG37 J.DC111 G-C WC 19-XIX cWW cW-W 38 I.DT38 J.DA110 T-A WC 20-XX cWW cW-W 39 I.DA39 J.DT109 A-T WC 20-XX cWW cW-W 40 I.DG40 J.DC108 G-C WC 19-XIX cWW cW-W 41 I.DA41 J.DT107 A-T WC 20-XX cWW cW-W 42 I.DC42 J.DG106 C-G WC 19-XIX cWW cW-W 43 I.DA43 J.DT105 A-T WC 20-XX cWW cW-W 44 I.DG44 J.DC104 G-C WC 19-XIX cWW cW-W 45 I.DC45 J.DG103 C-G WC 19-XIX cWW cW-W 46 I.DT46 J.DA102 T-A WC 20-XX cWW cW-W 47 I.DC47 J.DG101 C-G WC 19-XIX cWW cW-W 48 I.DT48 J.DA100 T-A WC 20-XX cWW cW-W 49 I.DA49 J.DT99 A-T WC 20-XX cWW cW-W 50 I.DG50 J.DC98 G-C WC 19-XIX cWW cW-W 51 I.DC51 J.DG97 C-G WC 19-XIX cWW cW-W 52 I.DA52 J.DT96 A-T WC 20-XX cWW cW-W 53 I.DC53 J.DG95 C-G WC 19-XIX cWW cW-W 54 I.DC54 J.DG94 C-G WC 19-XIX cWW cW-W 55 I.DG55 J.DC93 G-C WC 19-XIX cWW cW-W 56 I.DC56 J.DG92 C-G WC 19-XIX cWW cW-W 57 I.DT57 J.DA91 T-A WC 20-XX cWW cW-W 58 I.DT58 J.DA90 T-A WC 20-XX cWW cW-W 59 I.DA59 J.DT89 A-T WC 20-XX cWW cW-W 60 I.DA60 J.DT88 A-T WC 20-XX cWW cW-W 61 I.DA61 J.DT87 A-T WC 20-XX cWW cW-W 62 I.DC62 J.DG86 C-G WC 19-XIX cWW cW-W 63 I.DG63 J.DC85 G-C WC 19-XIX cWW cW-W 64 I.DC64 J.DG84 C-G WC 19-XIX cWW cW-W 65 I.DA65 J.DT83 A-T WC 20-XX cWW cW-W 66 I.DC66 J.DG82 C-G WC 19-XIX cWW cW-W 67 I.DG67 J.DC81 G-C WC 19-XIX cWW cW-W 68 I.DT68 J.DA80 T-A WC 20-XX cWW cW-W 69 I.DA69 J.DT79 A-T WC 20-XX cWW cW-W 70 I.DC70 J.DG78 C-G WC 19-XIX cWW cW-W 71 I.DG71 J.DC77 G-C WC 19-XIX cWW cW-W 72 I.DC72 J.DG76 C-G WC 19-XIX cWW cW-W 73 I.DG73 J.DC75 G-C WC 19-XIX cWW cW-W 74 I.DC74 J.DG74 C-G WC 19-XIX cWW cW-W 75 I.DT75 J.DA73 T-A WC 20-XX cWW cW-W 76 I.DG76 J.DC72 G-C WC 19-XIX cWW cW-W 77 I.DT77 J.DA71 T-A WC 20-XX cWW cW-W 78 I.DC78 J.DG70 C-G WC 19-XIX cWW cW-W 79 I.DC79 J.DG69 C-G WC 19-XIX cWW cW-W 80 I.DC79 J.DG70 C-G -- -- cWW cW-W 81 I.DC80 J.DG68 C-G WC 19-XIX cWW cW-W 82 I.DC81 J.DG67 C-G WC 19-XIX cWW cW-W 83 I.DC81 J.DG68 C-G -- -- cWW cW-W 84 I.DC82 J.DG66 C-G WC 19-XIX cWW cW-W 85 I.DG83 J.DC65 G-C WC 19-XIX cWW cW-W 86 I.DC84 J.DG64 C-G WC 19-XIX cWW cW-W 87 I.DG85 J.DC63 G-C WC 19-XIX cWW cW-W 88 I.DT86 J.DA62 T-A WC 20-XX cWW cW-W 89 I.DT87 J.DA61 T-A WC 20-XX cWW cW-W 90 I.DT88 J.DA60 T-A WC 20-XX cWW cW-W 91 I.DT89 J.DA59 T-A WC 20-XX cWW cW-W 92 I.DA90 J.DT58 A-T WC 20-XX cWW cW-W 93 I.DA91 J.DT57 A-T WC 20-XX cWW cW-W 94 I.DC92 J.DG56 C-G WC 19-XIX cWW cW-W 95 I.DC93 J.DG55 C-G WC 19-XIX cWW cW-W 96 I.DG94 J.DC54 G-C WC 19-XIX cWW cW-W 97 I.DC95 J.DG53 C-G WC 19-XIX cWW cW-W 98 I.DC96 J.DG52 C-G WC 19-XIX cWW cW-W 99 I.DA97 J.DT51 A-T WC 20-XX cWW cW-W 100 I.DA98 J.DT50 A-T WC 20-XX cWW cW-W 101 I.DG99 J.DC49 G-C WC 19-XIX cWW cW-W 102 I.DG100 J.DC48 G-C WC 19-XIX cWW cW-W 103 I.DG101 J.DC47 G-C WC 19-XIX cWW cW-W 104 I.DG102 J.DC46 G-C WC 19-XIX cWW cW-W 105 I.DA103 J.DT45 A-T WC 20-XX cWW cW-W 106 I.DT104 J.DA44 T-A WC 20-XX cWW cW-W 107 I.DT105 J.DA43 T-A WC 20-XX cWW cW-W 108 I.DA106 J.DT42 A-T WC 20-XX cWW cW-W 109 I.DC107 J.DG41 C-G WC 19-XIX cWW cW-W 110 I.DT108 J.DA40 T-A WC 20-XX cWW cW-W 111 I.DC109 J.DG39 C-G WC 19-XIX cWW cW-W 112 I.DC110 J.DG38 C-G WC 19-XIX cWW cW-W 113 I.DC111 J.DG37 C-G WC 19-XIX cWW cW-W 114 I.DT112 J.DA36 T-A WC 20-XX cWW cW-W 115 I.DA113 J.DT35 A-T WC 20-XX cWW cW-W 116 I.DG114 J.DC34 G-C WC 19-XIX cWW cW-W 117 I.DT115 J.DA33 T-A WC 20-XX cWW cW-W 118 I.DC116 J.DG32 C-G WC 19-XIX cWW cW-W 119 I.DT117 J.DA31 T-A WC 20-XX cWW cW-W 120 I.DC118 J.DG30 C-G WC 19-XIX cWW cW-W 121 I.DC119 J.DG29 C-G WC 19-XIX cWW cW-W 122 I.DA120 J.DT28 A-T WC 20-XX cWW cW-W 123 I.DG121 J.DC27 G-C WC 19-XIX cWW cW-W 124 I.DG122 J.DC26 G-C WC 19-XIX cWW cW-W 125 I.DC123 J.DG25 C-G WC 19-XIX cWW cW-W 126 I.DA124 J.DT24 A-T WC 20-XX cWW cW-W 127 I.DC125 J.DG23 C-G WC 19-XIX cWW cW-W 128 I.DG126 J.DC22 G-C WC 19-XIX cWW cW-W 129 I.DT127 J.DA21 T-A WC 20-XX cWW cW-W 130 I.DG128 J.DC20 G-C WC 19-XIX cWW cW-W 131 I.DT129 J.DA19 T-A WC 20-XX cWW cW-W 132 I.DC130 J.DG18 C-G WC 19-XIX cWW cW-W 133 I.DA131 J.DT17 A-T WC 20-XX cWW cW-W 134 I.DG132 J.DC16 G-C WC 19-XIX cWW cW-W 135 I.DA133 J.DT15 A-T WC 20-XX cWW cW-W 136 I.DT134 J.DA14 T-A WC 20-XX cWW cW-W 137 I.DA135 J.DT13 A-T WC 20-XX cWW cW-W 138 I.DT136 J.DA12 T-A WC 20-XX cWW cW-W 139 I.DA137 J.DT11 A-T WC 20-XX cWW cW-W 140 I.DT138 J.DA10 T-A WC 20-XX cWW cW-W 141 I.DA139 J.DT9 A-T WC 20-XX cWW cW-W 142 I.DC140 J.DG8 C-G WC 19-XIX cWW cW-W 143 I.DA141 J.DT7 A-T WC 20-XX cWW cW-W 144 I.DT142 J.DA6 T-A WC 20-XX cWW cW-W 145 I.DC143 J.DG5 C-G WC 19-XIX cWW cW-W 146 I.DC144 J.DG4 C-G WC 19-XIX cWW cW-W 147 I.DG145 J.DC3 G-C WC 19-XIX cWW cW-W 148 I.DA146 J.DT2 A-T WC 20-XX cWW cW-W 149 I.DT147 J.DA1 T-A WC 20-XX cWW cW-W 150 S.DT2 T.DA146 T+A -- -- cHW cM+W 151 S.DC3 T.DG145 C-G WC 19-XIX cWW cW-W 152 S.DG4 T.DC144 G-C WC 19-XIX cWW cW-W 153 S.DA5 T.DT143 A-T WC 20-XX cWW cW-W 154 S.DG6 T.DC142 G-C WC 19-XIX cWW cW-W 155 S.DA7 T.DT141 A-T WC 20-XX cWW cW-W 156 S.DA8 T.DT140 A-T WC 20-XX cWW cW-W 157 S.DT9 T.DA139 T-A WC 20-XX cWW cW-W 158 S.DC10 T.DG138 C-G WC 19-XIX cWW cW-W 159 S.DC11 T.DG137 C-G WC 19-XIX cWW cW-W 160 S.DC12 T.DG136 C-G WC 19-XIX cWW cW-W 161 S.DG13 T.DC135 G-C WC 19-XIX cWW cW-W 162 S.DG14 T.DC134 G-C WC 19-XIX cWW cW-W 163 S.DT15 T.DA133 T-A WC 20-XX cWW cW-W 164 S.DG16 T.DC132 G-C WC 19-XIX cWW cW-W 165 S.DC17 T.DG131 C-G WC 19-XIX cWW cW-W 166 S.DC18 T.DG130 C-G WC 19-XIX cWW cW-W 167 S.DG19 T.DC129 G-C WC 19-XIX cWW cW-W 168 S.DA20 T.DT128 A-T WC 20-XX cWW cW-W 169 S.DG21 T.DC127 G-C WC 19-XIX cWW cW-W 170 S.DG22 T.DC126 G-C WC 19-XIX cWW cW-W 171 S.DC23 T.DG125 C-G WC 19-XIX cWW cW-W 172 S.DC24 T.DG124 C-G WC 19-XIX cWW cW-W 173 S.DG25 T.DC123 G-C WC 19-XIX cWW cW-W 174 S.DC26 T.DG122 C-G WC 19-XIX cWW cW-W 175 S.DT27 T.DA121 T-A WC 20-XX cWW cW-W 176 S.DC28 T.DG120 C-G WC 19-XIX cWW cW-W 177 S.DA29 T.DT119 A-T WC 20-XX cWW cW-W 178 S.DA30 T.DT118 A-T WC 20-XX cWW cW-W 179 S.DT31 T.DA117 T-A WC 20-XX cWW cW-W 180 S.DT32 T.DA116 T-A WC 20-XX cWW cW-W 181 S.DG33 T.DC115 G-C WC 19-XIX cWW cW-W 182 S.DG34 T.DC114 G-C WC 19-XIX cWW cW-W 183 S.DT35 T.DA113 T-A WC 20-XX cWW cW-W 184 S.DC36 T.DG112 C-G WC 19-XIX cWW cW-W 185 S.DG37 T.DC111 G-C WC 19-XIX cWW cW-W 186 S.DT38 T.DA110 T-A WC 20-XX cWW cW-W 187 S.DA39 T.DT109 A-T WC 20-XX cWW cW-W 188 S.DG40 T.DC108 G-C WC 19-XIX cWW cW-W 189 S.DA41 T.DT107 A-T WC 20-XX cWW cW-W 190 S.DC42 T.DG106 C-G WC 19-XIX cWW cW-W 191 S.DA43 T.DT105 A-T WC 20-XX cWW cW-W 192 S.DG44 T.DC104 G-C WC 19-XIX cWW cW-W 193 S.DC45 T.DG103 C-G WC 19-XIX cWW cW-W 194 S.DT46 T.DA102 T-A WC 20-XX cWW cW-W 195 S.DC47 T.DG101 C-G WC 19-XIX cWW cW-W 196 S.DT48 T.DA100 T-A WC 20-XX cWW cW-W 197 S.DA49 T.DT99 A-T WC 20-XX cWW cW-W 198 S.DG50 T.DC98 G-C WC 19-XIX cWW cW-W 199 S.DC51 T.DG97 C-G WC 19-XIX cWW cW-W 200 S.DA52 T.DT96 A-T WC 20-XX cWW cW-W 201 S.DC53 T.DG95 C-G WC 19-XIX cWW cW-W 202 S.DC54 T.DG94 C-G WC 19-XIX cWW cW-W 203 S.DG55 T.DC93 G-C WC 19-XIX cWW cW-W 204 S.DC56 T.DG92 C-G WC 19-XIX cWW cW-W 205 S.DT57 T.DA91 T-A WC 20-XX cWW cW-W 206 S.DT58 T.DA90 T-A WC 20-XX cWW cW-W 207 S.DA59 T.DT89 A-T WC 20-XX cWW cW-W 208 S.DA60 T.DT88 A-T WC 20-XX cWW cW-W 209 S.DA61 T.DT87 A-T WC 20-XX cWW cW-W 210 S.DC62 T.DG86 C-G WC 19-XIX cWW cW-W 211 S.DG63 T.DC85 G-C WC 19-XIX cWW cW-W 212 S.DC64 T.DG84 C-G WC 19-XIX cWW cW-W 213 S.DA65 T.DT83 A-T WC 20-XX cWW cW-W 214 S.DC66 T.DG82 C-G WC 19-XIX cWW cW-W 215 S.DG67 T.DC81 G-C WC 19-XIX cWW cW-W 216 S.DT68 T.DA80 T-A WC 20-XX cWW cW-W 217 S.DA69 T.DT79 A-T WC 20-XX cWW cW-W 218 S.DC70 T.DG78 C-G WC 19-XIX cWW cW-W 219 S.DG71 T.DC77 G-C WC 19-XIX cWW cW-W 220 S.DC72 T.DG76 C-G WC 19-XIX cWW cW-W 221 S.DG73 T.DC75 G-C WC 19-XIX cWW cW-W 222 S.DC74 T.DG74 C-G WC 19-XIX cWW cW-W 223 S.DT75 T.DA73 T-A WC 20-XX cWW cW-W 224 S.DG76 T.DC72 G-C WC 19-XIX cWW cW-W 225 S.DT77 T.DA71 T-A WC 20-XX cWW cW-W 226 S.DC78 T.DG70 C-G WC 19-XIX cWW cW-W 227 S.DC79 T.DG69 C-G WC 19-XIX cWW cW-W 228 S.DC79 T.DG70 C-G -- -- cWW cW-W 229 S.DC80 T.DG68 C-G WC 19-XIX cWW cW-W 230 S.DC81 T.DG67 C-G WC 19-XIX cWW cW-W 231 S.DC81 T.DG68 C-G -- -- cWW cW-W 232 S.DC82 T.DG66 C-G WC 19-XIX cWW cW-W 233 S.DG83 T.DC65 G-C WC 19-XIX cWW cW-W 234 S.DC84 T.DG64 C-G WC 19-XIX cWW cW-W 235 S.DG85 T.DC63 G-C WC 19-XIX cWW cW-W 236 S.DT86 T.DA62 T-A WC 20-XX cWW cW-W 237 S.DT87 T.DA61 T-A WC 20-XX cWW cW-W 238 S.DT88 T.DA60 T-A WC 20-XX cWW cW-W 239 S.DT89 T.DA59 T-A WC 20-XX cWW cW-W 240 S.DA90 T.DT58 A-T WC 20-XX cWW cW-W 241 S.DA91 T.DT57 A-T WC 20-XX cWW cW-W 242 S.DC92 T.DG56 C-G WC 19-XIX cWW cW-W 243 S.DC93 T.DG55 C-G WC 19-XIX cWW cW-W 244 S.DG94 T.DC54 G-C WC 19-XIX cWW cW-W 245 S.DC95 T.DG53 C-G WC 19-XIX cWW cW-W 246 S.DC96 T.DG52 C-G WC 19-XIX cWW cW-W 247 S.DA97 T.DT51 A-T WC 20-XX cWW cW-W 248 S.DA98 T.DT50 A-T WC 20-XX cWW cW-W 249 S.DG99 T.DC49 G-C WC 19-XIX cWW cW-W 250 S.DG100 T.DC48 G-C WC 19-XIX cWW cW-W 251 S.DG101 T.DC47 G-C WC 19-XIX cWW cW-W 252 S.DG102 T.DC46 G-C WC 19-XIX cWW cW-W 253 S.DA103 T.DT45 A-T WC 20-XX cWW cW-W 254 S.DT104 T.DA44 T-A WC 20-XX cWW cW-W 255 S.DT105 T.DA43 T-A WC 20-XX cWW cW-W 256 S.DA106 T.DT42 A-T WC 20-XX cWW cW-W 257 S.DC107 T.DG41 C-G WC 19-XIX cWW cW-W 258 S.DT108 T.DA40 T-A WC 20-XX cWW cW-W 259 S.DC109 T.DG39 C-G WC 19-XIX cWW cW-W 260 S.DC110 T.DG38 C-G WC 19-XIX cWW cW-W 261 S.DC111 T.DG37 C-G WC 19-XIX cWW cW-W 262 S.DT112 T.DA36 T-A WC 20-XX cWW cW-W 263 S.DA113 T.DT35 A-T WC 20-XX cWW cW-W 264 S.DG114 T.DC34 G-C WC 19-XIX cWW cW-W 265 S.DT115 T.DA33 T-A WC 20-XX cWW cW-W 266 S.DC116 T.DG32 C-G WC 19-XIX cWW cW-W 267 S.DT117 T.DA31 T-A WC 20-XX cWW cW-W 268 S.DC118 T.DG30 C-G WC 19-XIX cWW cW-W 269 S.DC119 T.DG29 C-G WC 19-XIX cWW cW-W 270 S.DA120 T.DT28 A-T WC 20-XX cWW cW-W 271 S.DG121 T.DC27 G-C WC 19-XIX cWW cW-W 272 S.DG122 T.DC26 G-C WC 19-XIX cWW cW-W 273 S.DC123 T.DG25 C-G WC 19-XIX cWW cW-W 274 S.DA124 T.DT24 A-T WC 20-XX cWW cW-W 275 S.DC125 T.DG23 C-G WC 19-XIX cWW cW-W 276 S.DG126 T.DC22 G-C WC 19-XIX cWW cW-W 277 S.DT127 T.DA21 T-A WC 20-XX cWW cW-W 278 S.DG128 T.DC20 G-C WC 19-XIX cWW cW-W 279 S.DT129 T.DA19 T-A WC 20-XX cWW cW-W 280 S.DC130 T.DG18 C-G WC 19-XIX cWW cW-W 281 S.DA131 T.DT17 A-T WC 20-XX cWW cW-W 282 S.DG132 T.DC16 G-C WC 19-XIX cWW cW-W 283 S.DA133 T.DT15 A-T WC 20-XX cWW cW-W 284 S.DT134 T.DA14 T-A WC 20-XX cWW cW-W 285 S.DA135 T.DT13 A-T WC 20-XX cWW cW-W 286 S.DT136 T.DA12 T-A WC 20-XX cWW cW-W 287 S.DA137 T.DT11 A-T WC 20-XX cWW cW-W 288 S.DT138 T.DA10 T-A WC 20-XX cWW cW-W 289 S.DA139 T.DT9 A-T WC 20-XX cWW cW-W 290 S.DC140 T.DG8 C-G WC 19-XIX cWW cW-W 291 S.DA141 T.DT7 A-T WC 20-XX cWW cW-W 292 S.DT142 T.DA6 T-A WC 20-XX cWW cW-W 293 S.DC143 T.DG5 C-G WC 19-XIX cWW cW-W 294 S.DC144 T.DG4 C-G WC 19-XIX cWW cW-W 295 S.DG145 T.DC3 G-C WC 19-XIX cWW cW-W 296 S.DA146 T.DT2 A-T WC 20-XX cWW cW-W 297 S.DT147 T.DA1 T-A WC 20-XX cWW cW-W **************************************************************************** List of 2 helices Note: a helix is defined by base-stacking interactions, regardless of bp type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=146 strand-1 5'-TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT-3' bp-type .||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-AGCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATCAGAGGTCCGTGCACAGTCTATATATGTAGGCTA-5' helix-form ..BBBBB..BB.BBB...BB.BBBB..BBBBB.BBB....BBBB...BBB...BB...BBBBBBBBBBBBBB..BB.B..BBBBBBB..B...B.BB...BBB..BB.BBBB...BB..BBBBBBBB..B...BB.BBB.BBBBB 1 I.DT2 J.DA146 T+A Hoogsteen 23-XXIII cHW cM+W 2 I.DC3 J.DG145 C-G WC 19-XIX cWW cW-W 3 I.DG4 J.DC144 G-C WC 19-XIX cWW cW-W 4 I.DA5 J.DT143 A-T WC 20-XX cWW cW-W 5 I.DG6 J.DC142 G-C WC 19-XIX cWW cW-W 6 I.DA7 J.DT141 A-T WC 20-XX cWW cW-W 7 I.DA8 J.DT140 A-T WC 20-XX cWW cW-W 8 I.DT9 J.DA139 T-A WC 20-XX cWW cW-W 9 I.DC10 J.DG138 C-G WC 19-XIX cWW cW-W 10 I.DC11 J.DG137 C-G WC 19-XIX cWW cW-W 11 I.DC12 J.DG136 C-G WC 19-XIX cWW cW-W 12 I.DG13 J.DC135 G-C WC 19-XIX cWW cW-W 13 I.DG14 J.DC134 G-C WC 19-XIX cWW cW-W 14 I.DT15 J.DA133 T-A WC 20-XX cWW cW-W 15 I.DG16 J.DC132 G-C WC 19-XIX cWW cW-W 16 I.DC17 J.DG131 C-G WC 19-XIX cWW cW-W 17 I.DC18 J.DG130 C-G WC 19-XIX cWW cW-W 18 I.DG19 J.DC129 G-C WC 19-XIX cWW cW-W 19 I.DA20 J.DT128 A-T WC 20-XX cWW cW-W 20 I.DG21 J.DC127 G-C WC 19-XIX cWW cW-W 21 I.DG22 J.DC126 G-C WC 19-XIX cWW cW-W 22 I.DC23 J.DG125 C-G WC 19-XIX cWW cW-W 23 I.DC24 J.DG124 C-G WC 19-XIX cWW cW-W 24 I.DG25 J.DC123 G-C WC 19-XIX cWW cW-W 25 I.DC26 J.DG122 C-G WC 19-XIX cWW cW-W 26 I.DT27 J.DA121 T-A WC 20-XX cWW cW-W 27 I.DC28 J.DG120 C-G WC 19-XIX cWW cW-W 28 I.DA29 J.DT119 A-T WC 20-XX cWW cW-W 29 I.DA30 J.DT118 A-T WC 20-XX cWW cW-W 30 I.DT31 J.DA117 T-A WC 20-XX cWW cW-W 31 I.DT32 J.DA116 T-A WC 20-XX cWW cW-W 32 I.DG33 J.DC115 G-C WC 19-XIX cWW cW-W 33 I.DG34 J.DC114 G-C WC 19-XIX cWW cW-W 34 I.DT35 J.DA113 T-A WC 20-XX cWW cW-W 35 I.DC36 J.DG112 C-G WC 19-XIX cWW cW-W 36 I.DG37 J.DC111 G-C WC 19-XIX cWW cW-W 37 I.DT38 J.DA110 T-A WC 20-XX cWW cW-W 38 I.DA39 J.DT109 A-T WC 20-XX cWW cW-W 39 I.DG40 J.DC108 G-C WC 19-XIX cWW cW-W 40 I.DA41 J.DT107 A-T WC 20-XX cWW cW-W 41 I.DC42 J.DG106 C-G WC 19-XIX cWW cW-W 42 I.DA43 J.DT105 A-T WC 20-XX cWW cW-W 43 I.DG44 J.DC104 G-C WC 19-XIX cWW cW-W 44 I.DC45 J.DG103 C-G WC 19-XIX cWW cW-W 45 I.DT46 J.DA102 T-A WC 20-XX cWW cW-W 46 I.DC47 J.DG101 C-G WC 19-XIX cWW cW-W 47 I.DT48 J.DA100 T-A WC 20-XX cWW cW-W 48 I.DA49 J.DT99 A-T WC 20-XX cWW cW-W 49 I.DG50 J.DC98 G-C WC 19-XIX cWW cW-W 50 I.DC51 J.DG97 C-G WC 19-XIX cWW cW-W 51 I.DA52 J.DT96 A-T WC 20-XX cWW cW-W 52 I.DC53 J.DG95 C-G WC 19-XIX cWW cW-W 53 I.DC54 J.DG94 C-G WC 19-XIX cWW cW-W 54 I.DG55 J.DC93 G-C WC 19-XIX cWW cW-W 55 I.DC56 J.DG92 C-G WC 19-XIX cWW cW-W 56 I.DT57 J.DA91 T-A WC 20-XX cWW cW-W 57 I.DT58 J.DA90 T-A WC 20-XX cWW cW-W 58 I.DA59 J.DT89 A-T WC 20-XX cWW cW-W 59 I.DA60 J.DT88 A-T WC 20-XX cWW cW-W 60 I.DA61 J.DT87 A-T WC 20-XX cWW cW-W 61 I.DC62 J.DG86 C-G WC 19-XIX cWW cW-W 62 I.DG63 J.DC85 G-C WC 19-XIX cWW cW-W 63 I.DC64 J.DG84 C-G WC 19-XIX cWW cW-W 64 I.DA65 J.DT83 A-T WC 20-XX cWW cW-W 65 I.DC66 J.DG82 C-G WC 19-XIX cWW cW-W 66 I.DG67 J.DC81 G-C WC 19-XIX cWW cW-W 67 I.DT68 J.DA80 T-A WC 20-XX cWW cW-W 68 I.DA69 J.DT79 A-T WC 20-XX cWW cW-W 69 I.DC70 J.DG78 C-G WC 19-XIX cWW cW-W 70 I.DG71 J.DC77 G-C WC 19-XIX cWW cW-W 71 I.DC72 J.DG76 C-G WC 19-XIX cWW cW-W 72 I.DG73 J.DC75 G-C WC 19-XIX cWW cW-W 73 I.DC74 J.DG74 C-G WC 19-XIX cWW cW-W 74 I.DT75 J.DA73 T-A WC 20-XX cWW cW-W 75 I.DG76 J.DC72 G-C WC 19-XIX cWW cW-W 76 I.DT77 J.DA71 T-A WC 20-XX cWW cW-W 77 I.DC78 J.DG70 C-G WC 19-XIX cWW cW-W 78 I.DC79 J.DG69 C-G WC 19-XIX cWW cW-W 79 I.DC80 J.DG68 C-G WC 19-XIX cWW cW-W 80 I.DC81 J.DG67 C-G WC 19-XIX cWW cW-W 81 I.DC82 J.DG66 C-G WC 19-XIX cWW cW-W 82 I.DG83 J.DC65 G-C WC 19-XIX cWW cW-W 83 I.DC84 J.DG64 C-G WC 19-XIX cWW cW-W 84 I.DG85 J.DC63 G-C WC 19-XIX cWW cW-W 85 I.DT86 J.DA62 T-A WC 20-XX cWW cW-W 86 I.DT87 J.DA61 T-A WC 20-XX cWW cW-W 87 I.DT88 J.DA60 T-A WC 20-XX cWW cW-W 88 I.DT89 J.DA59 T-A WC 20-XX cWW cW-W 89 I.DA90 J.DT58 A-T WC 20-XX cWW cW-W 90 I.DA91 J.DT57 A-T WC 20-XX cWW cW-W 91 I.DC92 J.DG56 C-G WC 19-XIX cWW cW-W 92 I.DC93 J.DG55 C-G WC 19-XIX cWW cW-W 93 I.DG94 J.DC54 G-C WC 19-XIX cWW cW-W 94 I.DC95 J.DG53 C-G WC 19-XIX cWW cW-W 95 I.DC96 J.DG52 C-G WC 19-XIX cWW cW-W 96 I.DA97 J.DT51 A-T WC 20-XX cWW cW-W 97 I.DA98 J.DT50 A-T WC 20-XX cWW cW-W 98 I.DG99 J.DC49 G-C WC 19-XIX cWW cW-W 99 I.DG100 J.DC48 G-C WC 19-XIX cWW cW-W 100 I.DG101 J.DC47 G-C WC 19-XIX cWW cW-W 101 I.DG102 J.DC46 G-C WC 19-XIX cWW cW-W 102 I.DA103 J.DT45 A-T WC 20-XX cWW cW-W 103 I.DT104 J.DA44 T-A WC 20-XX cWW cW-W 104 I.DT105 J.DA43 T-A WC 20-XX cWW cW-W 105 I.DA106 J.DT42 A-T WC 20-XX cWW cW-W 106 I.DC107 J.DG41 C-G WC 19-XIX cWW cW-W 107 I.DT108 J.DA40 T-A WC 20-XX cWW cW-W 108 I.DC109 J.DG39 C-G WC 19-XIX cWW cW-W 109 I.DC110 J.DG38 C-G WC 19-XIX cWW cW-W 110 I.DC111 J.DG37 C-G WC 19-XIX cWW cW-W 111 I.DT112 J.DA36 T-A WC 20-XX cWW cW-W 112 I.DA113 J.DT35 A-T WC 20-XX cWW cW-W 113 I.DG114 J.DC34 G-C WC 19-XIX cWW cW-W 114 I.DT115 J.DA33 T-A WC 20-XX cWW cW-W 115 I.DC116 J.DG32 C-G WC 19-XIX cWW cW-W 116 I.DT117 J.DA31 T-A WC 20-XX cWW cW-W 117 I.DC118 J.DG30 C-G WC 19-XIX cWW cW-W 118 I.DC119 J.DG29 C-G WC 19-XIX cWW cW-W 119 I.DA120 J.DT28 A-T WC 20-XX cWW cW-W 120 I.DG121 J.DC27 G-C WC 19-XIX cWW cW-W 121 I.DG122 J.DC26 G-C WC 19-XIX cWW cW-W 122 I.DC123 J.DG25 C-G WC 19-XIX cWW cW-W 123 I.DA124 J.DT24 A-T WC 20-XX cWW cW-W 124 I.DC125 J.DG23 C-G WC 19-XIX cWW cW-W 125 I.DG126 J.DC22 G-C WC 19-XIX cWW cW-W 126 I.DT127 J.DA21 T-A WC 20-XX cWW cW-W 127 I.DG128 J.DC20 G-C WC 19-XIX cWW cW-W 128 I.DT129 J.DA19 T-A WC 20-XX cWW cW-W 129 I.DC130 J.DG18 C-G WC 19-XIX cWW cW-W 130 I.DA131 J.DT17 A-T WC 20-XX cWW cW-W 131 I.DG132 J.DC16 G-C WC 19-XIX cWW cW-W 132 I.DA133 J.DT15 A-T WC 20-XX cWW cW-W 133 I.DT134 J.DA14 T-A WC 20-XX cWW cW-W 134 I.DA135 J.DT13 A-T WC 20-XX cWW cW-W 135 I.DT136 J.DA12 T-A WC 20-XX cWW cW-W 136 I.DA137 J.DT11 A-T WC 20-XX cWW cW-W 137 I.DT138 J.DA10 T-A WC 20-XX cWW cW-W 138 I.DA139 J.DT9 A-T WC 20-XX cWW cW-W 139 I.DC140 J.DG8 C-G WC 19-XIX cWW cW-W 140 I.DA141 J.DT7 A-T WC 20-XX cWW cW-W 141 I.DT142 J.DA6 T-A WC 20-XX cWW cW-W 142 I.DC143 J.DG5 C-G WC 19-XIX cWW cW-W 143 I.DC144 J.DG4 C-G WC 19-XIX cWW cW-W 144 I.DG145 J.DC3 G-C WC 19-XIX cWW cW-W 145 I.DA146 J.DT2 A-T WC 20-XX cWW cW-W 146 I.DT147 J.DA1 T-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#2[1] bps=146 strand-1 5'-TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT-3' bp-type .||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-AGCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATCAGAGGTCCGTGCACAGTCTATATATGTAGGCTA-5' helix-form ..BBBBB.BBB.BBB...BB.BBBB..BBB.B.BBB....BBBB...BB....BB..BBBBBBBBBB.BBBBB.B.....BBBBBBB..B...B.BB...BBB..B...B.B...BB....BBBBBB..B...BBBBBBBBBBBB 1 S.DT2 T.DA146 T+A -- -- cHW cM+W 2 S.DC3 T.DG145 C-G WC 19-XIX cWW cW-W 3 S.DG4 T.DC144 G-C WC 19-XIX cWW cW-W 4 S.DA5 T.DT143 A-T WC 20-XX cWW cW-W 5 S.DG6 T.DC142 G-C WC 19-XIX cWW cW-W 6 S.DA7 T.DT141 A-T WC 20-XX cWW cW-W 7 S.DA8 T.DT140 A-T WC 20-XX cWW cW-W 8 S.DT9 T.DA139 T-A WC 20-XX cWW cW-W 9 S.DC10 T.DG138 C-G WC 19-XIX cWW cW-W 10 S.DC11 T.DG137 C-G WC 19-XIX cWW cW-W 11 S.DC12 T.DG136 C-G WC 19-XIX cWW cW-W 12 S.DG13 T.DC135 G-C WC 19-XIX cWW cW-W 13 S.DG14 T.DC134 G-C WC 19-XIX cWW cW-W 14 S.DT15 T.DA133 T-A WC 20-XX cWW cW-W 15 S.DG16 T.DC132 G-C WC 19-XIX cWW cW-W 16 S.DC17 T.DG131 C-G WC 19-XIX cWW cW-W 17 S.DC18 T.DG130 C-G WC 19-XIX cWW cW-W 18 S.DG19 T.DC129 G-C WC 19-XIX cWW cW-W 19 S.DA20 T.DT128 A-T WC 20-XX cWW cW-W 20 S.DG21 T.DC127 G-C WC 19-XIX cWW cW-W 21 S.DG22 T.DC126 G-C WC 19-XIX cWW cW-W 22 S.DC23 T.DG125 C-G WC 19-XIX cWW cW-W 23 S.DC24 T.DG124 C-G WC 19-XIX cWW cW-W 24 S.DG25 T.DC123 G-C WC 19-XIX cWW cW-W 25 S.DC26 T.DG122 C-G WC 19-XIX cWW cW-W 26 S.DT27 T.DA121 T-A WC 20-XX cWW cW-W 27 S.DC28 T.DG120 C-G WC 19-XIX cWW cW-W 28 S.DA29 T.DT119 A-T WC 20-XX cWW cW-W 29 S.DA30 T.DT118 A-T WC 20-XX cWW cW-W 30 S.DT31 T.DA117 T-A WC 20-XX cWW cW-W 31 S.DT32 T.DA116 T-A WC 20-XX cWW cW-W 32 S.DG33 T.DC115 G-C WC 19-XIX cWW cW-W 33 S.DG34 T.DC114 G-C WC 19-XIX cWW cW-W 34 S.DT35 T.DA113 T-A WC 20-XX cWW cW-W 35 S.DC36 T.DG112 C-G WC 19-XIX cWW cW-W 36 S.DG37 T.DC111 G-C WC 19-XIX cWW cW-W 37 S.DT38 T.DA110 T-A WC 20-XX cWW cW-W 38 S.DA39 T.DT109 A-T WC 20-XX cWW cW-W 39 S.DG40 T.DC108 G-C WC 19-XIX cWW cW-W 40 S.DA41 T.DT107 A-T WC 20-XX cWW cW-W 41 S.DC42 T.DG106 C-G WC 19-XIX cWW cW-W 42 S.DA43 T.DT105 A-T WC 20-XX cWW cW-W 43 S.DG44 T.DC104 G-C WC 19-XIX cWW cW-W 44 S.DC45 T.DG103 C-G WC 19-XIX cWW cW-W 45 S.DT46 T.DA102 T-A WC 20-XX cWW cW-W 46 S.DC47 T.DG101 C-G WC 19-XIX cWW cW-W 47 S.DT48 T.DA100 T-A WC 20-XX cWW cW-W 48 S.DA49 T.DT99 A-T WC 20-XX cWW cW-W 49 S.DG50 T.DC98 G-C WC 19-XIX cWW cW-W 50 S.DC51 T.DG97 C-G WC 19-XIX cWW cW-W 51 S.DA52 T.DT96 A-T WC 20-XX cWW cW-W 52 S.DC53 T.DG95 C-G WC 19-XIX cWW cW-W 53 S.DC54 T.DG94 C-G WC 19-XIX cWW cW-W 54 S.DG55 T.DC93 G-C WC 19-XIX cWW cW-W 55 S.DC56 T.DG92 C-G WC 19-XIX cWW cW-W 56 S.DT57 T.DA91 T-A WC 20-XX cWW cW-W 57 S.DT58 T.DA90 T-A WC 20-XX cWW cW-W 58 S.DA59 T.DT89 A-T WC 20-XX cWW cW-W 59 S.DA60 T.DT88 A-T WC 20-XX cWW cW-W 60 S.DA61 T.DT87 A-T WC 20-XX cWW cW-W 61 S.DC62 T.DG86 C-G WC 19-XIX cWW cW-W 62 S.DG63 T.DC85 G-C WC 19-XIX cWW cW-W 63 S.DC64 T.DG84 C-G WC 19-XIX cWW cW-W 64 S.DA65 T.DT83 A-T WC 20-XX cWW cW-W 65 S.DC66 T.DG82 C-G WC 19-XIX cWW cW-W 66 S.DG67 T.DC81 G-C WC 19-XIX cWW cW-W 67 S.DT68 T.DA80 T-A WC 20-XX cWW cW-W 68 S.DA69 T.DT79 A-T WC 20-XX cWW cW-W 69 S.DC70 T.DG78 C-G WC 19-XIX cWW cW-W 70 S.DG71 T.DC77 G-C WC 19-XIX cWW cW-W 71 S.DC72 T.DG76 C-G WC 19-XIX cWW cW-W 72 S.DG73 T.DC75 G-C WC 19-XIX cWW cW-W 73 S.DC74 T.DG74 C-G WC 19-XIX cWW cW-W 74 S.DT75 T.DA73 T-A WC 20-XX cWW cW-W 75 S.DG76 T.DC72 G-C WC 19-XIX cWW cW-W 76 S.DT77 T.DA71 T-A WC 20-XX cWW cW-W 77 S.DC78 T.DG70 C-G WC 19-XIX cWW cW-W 78 S.DC79 T.DG69 C-G WC 19-XIX cWW cW-W 79 S.DC80 T.DG68 C-G WC 19-XIX cWW cW-W 80 S.DC81 T.DG67 C-G WC 19-XIX cWW cW-W 81 S.DC82 T.DG66 C-G WC 19-XIX cWW cW-W 82 S.DG83 T.DC65 G-C WC 19-XIX cWW cW-W 83 S.DC84 T.DG64 C-G WC 19-XIX cWW cW-W 84 S.DG85 T.DC63 G-C WC 19-XIX cWW cW-W 85 S.DT86 T.DA62 T-A WC 20-XX cWW cW-W 86 S.DT87 T.DA61 T-A WC 20-XX cWW cW-W 87 S.DT88 T.DA60 T-A WC 20-XX cWW cW-W 88 S.DT89 T.DA59 T-A WC 20-XX cWW cW-W 89 S.DA90 T.DT58 A-T WC 20-XX cWW cW-W 90 S.DA91 T.DT57 A-T WC 20-XX cWW cW-W 91 S.DC92 T.DG56 C-G WC 19-XIX cWW cW-W 92 S.DC93 T.DG55 C-G WC 19-XIX cWW cW-W 93 S.DG94 T.DC54 G-C WC 19-XIX cWW cW-W 94 S.DC95 T.DG53 C-G WC 19-XIX cWW cW-W 95 S.DC96 T.DG52 C-G WC 19-XIX cWW cW-W 96 S.DA97 T.DT51 A-T WC 20-XX cWW cW-W 97 S.DA98 T.DT50 A-T WC 20-XX cWW cW-W 98 S.DG99 T.DC49 G-C WC 19-XIX cWW cW-W 99 S.DG100 T.DC48 G-C WC 19-XIX cWW cW-W 100 S.DG101 T.DC47 G-C WC 19-XIX cWW cW-W 101 S.DG102 T.DC46 G-C WC 19-XIX cWW cW-W 102 S.DA103 T.DT45 A-T WC 20-XX cWW cW-W 103 S.DT104 T.DA44 T-A WC 20-XX cWW cW-W 104 S.DT105 T.DA43 T-A WC 20-XX cWW cW-W 105 S.DA106 T.DT42 A-T WC 20-XX cWW cW-W 106 S.DC107 T.DG41 C-G WC 19-XIX cWW cW-W 107 S.DT108 T.DA40 T-A WC 20-XX cWW cW-W 108 S.DC109 T.DG39 C-G WC 19-XIX cWW cW-W 109 S.DC110 T.DG38 C-G WC 19-XIX cWW cW-W 110 S.DC111 T.DG37 C-G WC 19-XIX cWW cW-W 111 S.DT112 T.DA36 T-A WC 20-XX cWW cW-W 112 S.DA113 T.DT35 A-T WC 20-XX cWW cW-W 113 S.DG114 T.DC34 G-C WC 19-XIX cWW cW-W 114 S.DT115 T.DA33 T-A WC 20-XX cWW cW-W 115 S.DC116 T.DG32 C-G WC 19-XIX cWW cW-W 116 S.DT117 T.DA31 T-A WC 20-XX cWW cW-W 117 S.DC118 T.DG30 C-G WC 19-XIX cWW cW-W 118 S.DC119 T.DG29 C-G WC 19-XIX cWW cW-W 119 S.DA120 T.DT28 A-T WC 20-XX cWW cW-W 120 S.DG121 T.DC27 G-C WC 19-XIX cWW cW-W 121 S.DG122 T.DC26 G-C WC 19-XIX cWW cW-W 122 S.DC123 T.DG25 C-G WC 19-XIX cWW cW-W 123 S.DA124 T.DT24 A-T WC 20-XX cWW cW-W 124 S.DC125 T.DG23 C-G WC 19-XIX cWW cW-W 125 S.DG126 T.DC22 G-C WC 19-XIX cWW cW-W 126 S.DT127 T.DA21 T-A WC 20-XX cWW cW-W 127 S.DG128 T.DC20 G-C WC 19-XIX cWW cW-W 128 S.DT129 T.DA19 T-A WC 20-XX cWW cW-W 129 S.DC130 T.DG18 C-G WC 19-XIX cWW cW-W 130 S.DA131 T.DT17 A-T WC 20-XX cWW cW-W 131 S.DG132 T.DC16 G-C WC 19-XIX cWW cW-W 132 S.DA133 T.DT15 A-T WC 20-XX cWW cW-W 133 S.DT134 T.DA14 T-A WC 20-XX cWW cW-W 134 S.DA135 T.DT13 A-T WC 20-XX cWW cW-W 135 S.DT136 T.DA12 T-A WC 20-XX cWW cW-W 136 S.DA137 T.DT11 A-T WC 20-XX cWW cW-W 137 S.DT138 T.DA10 T-A WC 20-XX cWW cW-W 138 S.DA139 T.DT9 A-T WC 20-XX cWW cW-W 139 S.DC140 T.DG8 C-G WC 19-XIX cWW cW-W 140 S.DA141 T.DT7 A-T WC 20-XX cWW cW-W 141 S.DT142 T.DA6 T-A WC 20-XX cWW cW-W 142 S.DC143 T.DG5 C-G WC 19-XIX cWW cW-W 143 S.DC144 T.DG4 C-G WC 19-XIX cWW cW-W 144 S.DG145 T.DC3 G-C WC 19-XIX cWW cW-W 145 S.DA146 T.DT2 A-T WC 20-XX cWW cW-W 146 S.DT147 T.DA1 T-A WC 20-XX cWW cW-W **************************************************************************** List of 2 stems Note: a stem is defined as a helix consisting of only canonical WC/wobble pairs, with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=145 strand-1 5'-CGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT-3' bp-type ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-GCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATCAGAGGTCCGTGCACAGTCTATATATGTAGGCTA-5' helix-form .BBBBB..BB.BBB...BB.BBBB..BBBBB.BBB....BBBB...BBB...BB...BBBBBBBBBBBBBB..BB.B..BBBBBBB..B...B.BB...BBB..BB.BBBB...BB..BBBBBBBB..B...BB.BBB.BBBBB 1 I.DC3 J.DG145 C-G WC 19-XIX cWW cW-W 2 I.DG4 J.DC144 G-C WC 19-XIX cWW cW-W 3 I.DA5 J.DT143 A-T WC 20-XX cWW cW-W 4 I.DG6 J.DC142 G-C WC 19-XIX cWW cW-W 5 I.DA7 J.DT141 A-T WC 20-XX cWW cW-W 6 I.DA8 J.DT140 A-T WC 20-XX cWW cW-W 7 I.DT9 J.DA139 T-A WC 20-XX cWW cW-W 8 I.DC10 J.DG138 C-G WC 19-XIX cWW cW-W 9 I.DC11 J.DG137 C-G WC 19-XIX cWW cW-W 10 I.DC12 J.DG136 C-G WC 19-XIX cWW cW-W 11 I.DG13 J.DC135 G-C WC 19-XIX cWW cW-W 12 I.DG14 J.DC134 G-C WC 19-XIX cWW cW-W 13 I.DT15 J.DA133 T-A WC 20-XX cWW cW-W 14 I.DG16 J.DC132 G-C WC 19-XIX cWW cW-W 15 I.DC17 J.DG131 C-G WC 19-XIX cWW cW-W 16 I.DC18 J.DG130 C-G WC 19-XIX cWW cW-W 17 I.DG19 J.DC129 G-C WC 19-XIX cWW cW-W 18 I.DA20 J.DT128 A-T WC 20-XX cWW cW-W 19 I.DG21 J.DC127 G-C WC 19-XIX cWW cW-W 20 I.DG22 J.DC126 G-C WC 19-XIX cWW cW-W 21 I.DC23 J.DG125 C-G WC 19-XIX cWW cW-W 22 I.DC24 J.DG124 C-G WC 19-XIX cWW cW-W 23 I.DG25 J.DC123 G-C WC 19-XIX cWW cW-W 24 I.DC26 J.DG122 C-G WC 19-XIX cWW cW-W 25 I.DT27 J.DA121 T-A WC 20-XX cWW cW-W 26 I.DC28 J.DG120 C-G WC 19-XIX cWW cW-W 27 I.DA29 J.DT119 A-T WC 20-XX cWW cW-W 28 I.DA30 J.DT118 A-T WC 20-XX cWW cW-W 29 I.DT31 J.DA117 T-A WC 20-XX cWW cW-W 30 I.DT32 J.DA116 T-A WC 20-XX cWW cW-W 31 I.DG33 J.DC115 G-C WC 19-XIX cWW cW-W 32 I.DG34 J.DC114 G-C WC 19-XIX cWW cW-W 33 I.DT35 J.DA113 T-A WC 20-XX cWW cW-W 34 I.DC36 J.DG112 C-G WC 19-XIX cWW cW-W 35 I.DG37 J.DC111 G-C WC 19-XIX cWW cW-W 36 I.DT38 J.DA110 T-A WC 20-XX cWW cW-W 37 I.DA39 J.DT109 A-T WC 20-XX cWW cW-W 38 I.DG40 J.DC108 G-C WC 19-XIX cWW cW-W 39 I.DA41 J.DT107 A-T WC 20-XX cWW cW-W 40 I.DC42 J.DG106 C-G WC 19-XIX cWW cW-W 41 I.DA43 J.DT105 A-T WC 20-XX cWW cW-W 42 I.DG44 J.DC104 G-C WC 19-XIX cWW cW-W 43 I.DC45 J.DG103 C-G WC 19-XIX cWW cW-W 44 I.DT46 J.DA102 T-A WC 20-XX cWW cW-W 45 I.DC47 J.DG101 C-G WC 19-XIX cWW cW-W 46 I.DT48 J.DA100 T-A WC 20-XX cWW cW-W 47 I.DA49 J.DT99 A-T WC 20-XX cWW cW-W 48 I.DG50 J.DC98 G-C WC 19-XIX cWW cW-W 49 I.DC51 J.DG97 C-G WC 19-XIX cWW cW-W 50 I.DA52 J.DT96 A-T WC 20-XX cWW cW-W 51 I.DC53 J.DG95 C-G WC 19-XIX cWW cW-W 52 I.DC54 J.DG94 C-G WC 19-XIX cWW cW-W 53 I.DG55 J.DC93 G-C WC 19-XIX cWW cW-W 54 I.DC56 J.DG92 C-G WC 19-XIX cWW cW-W 55 I.DT57 J.DA91 T-A WC 20-XX cWW cW-W 56 I.DT58 J.DA90 T-A WC 20-XX cWW cW-W 57 I.DA59 J.DT89 A-T WC 20-XX cWW cW-W 58 I.DA60 J.DT88 A-T WC 20-XX cWW cW-W 59 I.DA61 J.DT87 A-T WC 20-XX cWW cW-W 60 I.DC62 J.DG86 C-G WC 19-XIX cWW cW-W 61 I.DG63 J.DC85 G-C WC 19-XIX cWW cW-W 62 I.DC64 J.DG84 C-G WC 19-XIX cWW cW-W 63 I.DA65 J.DT83 A-T WC 20-XX cWW cW-W 64 I.DC66 J.DG82 C-G WC 19-XIX cWW cW-W 65 I.DG67 J.DC81 G-C WC 19-XIX cWW cW-W 66 I.DT68 J.DA80 T-A WC 20-XX cWW cW-W 67 I.DA69 J.DT79 A-T WC 20-XX cWW cW-W 68 I.DC70 J.DG78 C-G WC 19-XIX cWW cW-W 69 I.DG71 J.DC77 G-C WC 19-XIX cWW cW-W 70 I.DC72 J.DG76 C-G WC 19-XIX cWW cW-W 71 I.DG73 J.DC75 G-C WC 19-XIX cWW cW-W 72 I.DC74 J.DG74 C-G WC 19-XIX cWW cW-W 73 I.DT75 J.DA73 T-A WC 20-XX cWW cW-W 74 I.DG76 J.DC72 G-C WC 19-XIX cWW cW-W 75 I.DT77 J.DA71 T-A WC 20-XX cWW cW-W 76 I.DC78 J.DG70 C-G WC 19-XIX cWW cW-W 77 I.DC79 J.DG69 C-G WC 19-XIX cWW cW-W 78 I.DC80 J.DG68 C-G WC 19-XIX cWW cW-W 79 I.DC81 J.DG67 C-G WC 19-XIX cWW cW-W 80 I.DC82 J.DG66 C-G WC 19-XIX cWW cW-W 81 I.DG83 J.DC65 G-C WC 19-XIX cWW cW-W 82 I.DC84 J.DG64 C-G WC 19-XIX cWW cW-W 83 I.DG85 J.DC63 G-C WC 19-XIX cWW cW-W 84 I.DT86 J.DA62 T-A WC 20-XX cWW cW-W 85 I.DT87 J.DA61 T-A WC 20-XX cWW cW-W 86 I.DT88 J.DA60 T-A WC 20-XX cWW cW-W 87 I.DT89 J.DA59 T-A WC 20-XX cWW cW-W 88 I.DA90 J.DT58 A-T WC 20-XX cWW cW-W 89 I.DA91 J.DT57 A-T WC 20-XX cWW cW-W 90 I.DC92 J.DG56 C-G WC 19-XIX cWW cW-W 91 I.DC93 J.DG55 C-G WC 19-XIX cWW cW-W 92 I.DG94 J.DC54 G-C WC 19-XIX cWW cW-W 93 I.DC95 J.DG53 C-G WC 19-XIX cWW cW-W 94 I.DC96 J.DG52 C-G WC 19-XIX cWW cW-W 95 I.DA97 J.DT51 A-T WC 20-XX cWW cW-W 96 I.DA98 J.DT50 A-T WC 20-XX cWW cW-W 97 I.DG99 J.DC49 G-C WC 19-XIX cWW cW-W 98 I.DG100 J.DC48 G-C WC 19-XIX cWW cW-W 99 I.DG101 J.DC47 G-C WC 19-XIX cWW cW-W 100 I.DG102 J.DC46 G-C WC 19-XIX cWW cW-W 101 I.DA103 J.DT45 A-T WC 20-XX cWW cW-W 102 I.DT104 J.DA44 T-A WC 20-XX cWW cW-W 103 I.DT105 J.DA43 T-A WC 20-XX cWW cW-W 104 I.DA106 J.DT42 A-T WC 20-XX cWW cW-W 105 I.DC107 J.DG41 C-G WC 19-XIX cWW cW-W 106 I.DT108 J.DA40 T-A WC 20-XX cWW cW-W 107 I.DC109 J.DG39 C-G WC 19-XIX cWW cW-W 108 I.DC110 J.DG38 C-G WC 19-XIX cWW cW-W 109 I.DC111 J.DG37 C-G WC 19-XIX cWW cW-W 110 I.DT112 J.DA36 T-A WC 20-XX cWW cW-W 111 I.DA113 J.DT35 A-T WC 20-XX cWW cW-W 112 I.DG114 J.DC34 G-C WC 19-XIX cWW cW-W 113 I.DT115 J.DA33 T-A WC 20-XX cWW cW-W 114 I.DC116 J.DG32 C-G WC 19-XIX cWW cW-W 115 I.DT117 J.DA31 T-A WC 20-XX cWW cW-W 116 I.DC118 J.DG30 C-G WC 19-XIX cWW cW-W 117 I.DC119 J.DG29 C-G WC 19-XIX cWW cW-W 118 I.DA120 J.DT28 A-T WC 20-XX cWW cW-W 119 I.DG121 J.DC27 G-C WC 19-XIX cWW cW-W 120 I.DG122 J.DC26 G-C WC 19-XIX cWW cW-W 121 I.DC123 J.DG25 C-G WC 19-XIX cWW cW-W 122 I.DA124 J.DT24 A-T WC 20-XX cWW cW-W 123 I.DC125 J.DG23 C-G WC 19-XIX cWW cW-W 124 I.DG126 J.DC22 G-C WC 19-XIX cWW cW-W 125 I.DT127 J.DA21 T-A WC 20-XX cWW cW-W 126 I.DG128 J.DC20 G-C WC 19-XIX cWW cW-W 127 I.DT129 J.DA19 T-A WC 20-XX cWW cW-W 128 I.DC130 J.DG18 C-G WC 19-XIX cWW cW-W 129 I.DA131 J.DT17 A-T WC 20-XX cWW cW-W 130 I.DG132 J.DC16 G-C WC 19-XIX cWW cW-W 131 I.DA133 J.DT15 A-T WC 20-XX cWW cW-W 132 I.DT134 J.DA14 T-A WC 20-XX cWW cW-W 133 I.DA135 J.DT13 A-T WC 20-XX cWW cW-W 134 I.DT136 J.DA12 T-A WC 20-XX cWW cW-W 135 I.DA137 J.DT11 A-T WC 20-XX cWW cW-W 136 I.DT138 J.DA10 T-A WC 20-XX cWW cW-W 137 I.DA139 J.DT9 A-T WC 20-XX cWW cW-W 138 I.DC140 J.DG8 C-G WC 19-XIX cWW cW-W 139 I.DA141 J.DT7 A-T WC 20-XX cWW cW-W 140 I.DT142 J.DA6 T-A WC 20-XX cWW cW-W 141 I.DC143 J.DG5 C-G WC 19-XIX cWW cW-W 142 I.DC144 J.DG4 C-G WC 19-XIX cWW cW-W 143 I.DG145 J.DC3 G-C WC 19-XIX cWW cW-W 144 I.DA146 J.DT2 A-T WC 20-XX cWW cW-W 145 I.DT147 J.DA1 T-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#2[#2] bps=145 strand-1 5'-CGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT-3' bp-type ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-GCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATCAGAGGTCCGTGCACAGTCTATATATGTAGGCTA-5' helix-form .BBBBB.BBB.BBB...BB.BBBB..BBB.B.BBB....BBBB...BB....BB..BBBBBBBBBB.BBBBB.B.....BBBBBBB..B...B.BB...BBB..B...B.B...BB....BBBBBB..B...BBBBBBBBBBBB 1 S.DC3 T.DG145 C-G WC 19-XIX cWW cW-W 2 S.DG4 T.DC144 G-C WC 19-XIX cWW cW-W 3 S.DA5 T.DT143 A-T WC 20-XX cWW cW-W 4 S.DG6 T.DC142 G-C WC 19-XIX cWW cW-W 5 S.DA7 T.DT141 A-T WC 20-XX cWW cW-W 6 S.DA8 T.DT140 A-T WC 20-XX cWW cW-W 7 S.DT9 T.DA139 T-A WC 20-XX cWW cW-W 8 S.DC10 T.DG138 C-G WC 19-XIX cWW cW-W 9 S.DC11 T.DG137 C-G WC 19-XIX cWW cW-W 10 S.DC12 T.DG136 C-G WC 19-XIX cWW cW-W 11 S.DG13 T.DC135 G-C WC 19-XIX cWW cW-W 12 S.DG14 T.DC134 G-C WC 19-XIX cWW cW-W 13 S.DT15 T.DA133 T-A WC 20-XX cWW cW-W 14 S.DG16 T.DC132 G-C WC 19-XIX cWW cW-W 15 S.DC17 T.DG131 C-G WC 19-XIX cWW cW-W 16 S.DC18 T.DG130 C-G WC 19-XIX cWW cW-W 17 S.DG19 T.DC129 G-C WC 19-XIX cWW cW-W 18 S.DA20 T.DT128 A-T WC 20-XX cWW cW-W 19 S.DG21 T.DC127 G-C WC 19-XIX cWW cW-W 20 S.DG22 T.DC126 G-C WC 19-XIX cWW cW-W 21 S.DC23 T.DG125 C-G WC 19-XIX cWW cW-W 22 S.DC24 T.DG124 C-G WC 19-XIX cWW cW-W 23 S.DG25 T.DC123 G-C WC 19-XIX cWW cW-W 24 S.DC26 T.DG122 C-G WC 19-XIX cWW cW-W 25 S.DT27 T.DA121 T-A WC 20-XX cWW cW-W 26 S.DC28 T.DG120 C-G WC 19-XIX cWW cW-W 27 S.DA29 T.DT119 A-T WC 20-XX cWW cW-W 28 S.DA30 T.DT118 A-T WC 20-XX cWW cW-W 29 S.DT31 T.DA117 T-A WC 20-XX cWW cW-W 30 S.DT32 T.DA116 T-A WC 20-XX cWW cW-W 31 S.DG33 T.DC115 G-C WC 19-XIX cWW cW-W 32 S.DG34 T.DC114 G-C WC 19-XIX cWW cW-W 33 S.DT35 T.DA113 T-A WC 20-XX cWW cW-W 34 S.DC36 T.DG112 C-G WC 19-XIX cWW cW-W 35 S.DG37 T.DC111 G-C WC 19-XIX cWW cW-W 36 S.DT38 T.DA110 T-A WC 20-XX cWW cW-W 37 S.DA39 T.DT109 A-T WC 20-XX cWW cW-W 38 S.DG40 T.DC108 G-C WC 19-XIX cWW cW-W 39 S.DA41 T.DT107 A-T WC 20-XX cWW cW-W 40 S.DC42 T.DG106 C-G WC 19-XIX cWW cW-W 41 S.DA43 T.DT105 A-T WC 20-XX cWW cW-W 42 S.DG44 T.DC104 G-C WC 19-XIX cWW cW-W 43 S.DC45 T.DG103 C-G WC 19-XIX cWW cW-W 44 S.DT46 T.DA102 T-A WC 20-XX cWW cW-W 45 S.DC47 T.DG101 C-G WC 19-XIX cWW cW-W 46 S.DT48 T.DA100 T-A WC 20-XX cWW cW-W 47 S.DA49 T.DT99 A-T WC 20-XX cWW cW-W 48 S.DG50 T.DC98 G-C WC 19-XIX cWW cW-W 49 S.DC51 T.DG97 C-G WC 19-XIX cWW cW-W 50 S.DA52 T.DT96 A-T WC 20-XX cWW cW-W 51 S.DC53 T.DG95 C-G WC 19-XIX cWW cW-W 52 S.DC54 T.DG94 C-G WC 19-XIX cWW cW-W 53 S.DG55 T.DC93 G-C WC 19-XIX cWW cW-W 54 S.DC56 T.DG92 C-G WC 19-XIX cWW cW-W 55 S.DT57 T.DA91 T-A WC 20-XX cWW cW-W 56 S.DT58 T.DA90 T-A WC 20-XX cWW cW-W 57 S.DA59 T.DT89 A-T WC 20-XX cWW cW-W 58 S.DA60 T.DT88 A-T WC 20-XX cWW cW-W 59 S.DA61 T.DT87 A-T WC 20-XX cWW cW-W 60 S.DC62 T.DG86 C-G WC 19-XIX cWW cW-W 61 S.DG63 T.DC85 G-C WC 19-XIX cWW cW-W 62 S.DC64 T.DG84 C-G WC 19-XIX cWW cW-W 63 S.DA65 T.DT83 A-T WC 20-XX cWW cW-W 64 S.DC66 T.DG82 C-G WC 19-XIX cWW cW-W 65 S.DG67 T.DC81 G-C WC 19-XIX cWW cW-W 66 S.DT68 T.DA80 T-A WC 20-XX cWW cW-W 67 S.DA69 T.DT79 A-T WC 20-XX cWW cW-W 68 S.DC70 T.DG78 C-G WC 19-XIX cWW cW-W 69 S.DG71 T.DC77 G-C WC 19-XIX cWW cW-W 70 S.DC72 T.DG76 C-G WC 19-XIX cWW cW-W 71 S.DG73 T.DC75 G-C WC 19-XIX cWW cW-W 72 S.DC74 T.DG74 C-G WC 19-XIX cWW cW-W 73 S.DT75 T.DA73 T-A WC 20-XX cWW cW-W 74 S.DG76 T.DC72 G-C WC 19-XIX cWW cW-W 75 S.DT77 T.DA71 T-A WC 20-XX cWW cW-W 76 S.DC78 T.DG70 C-G WC 19-XIX cWW cW-W 77 S.DC79 T.DG69 C-G WC 19-XIX cWW cW-W 78 S.DC80 T.DG68 C-G WC 19-XIX cWW cW-W 79 S.DC81 T.DG67 C-G WC 19-XIX cWW cW-W 80 S.DC82 T.DG66 C-G WC 19-XIX cWW cW-W 81 S.DG83 T.DC65 G-C WC 19-XIX cWW cW-W 82 S.DC84 T.DG64 C-G WC 19-XIX cWW cW-W 83 S.DG85 T.DC63 G-C WC 19-XIX cWW cW-W 84 S.DT86 T.DA62 T-A WC 20-XX cWW cW-W 85 S.DT87 T.DA61 T-A WC 20-XX cWW cW-W 86 S.DT88 T.DA60 T-A WC 20-XX cWW cW-W 87 S.DT89 T.DA59 T-A WC 20-XX cWW cW-W 88 S.DA90 T.DT58 A-T WC 20-XX cWW cW-W 89 S.DA91 T.DT57 A-T WC 20-XX cWW cW-W 90 S.DC92 T.DG56 C-G WC 19-XIX cWW cW-W 91 S.DC93 T.DG55 C-G WC 19-XIX cWW cW-W 92 S.DG94 T.DC54 G-C WC 19-XIX cWW cW-W 93 S.DC95 T.DG53 C-G WC 19-XIX cWW cW-W 94 S.DC96 T.DG52 C-G WC 19-XIX cWW cW-W 95 S.DA97 T.DT51 A-T WC 20-XX cWW cW-W 96 S.DA98 T.DT50 A-T WC 20-XX cWW cW-W 97 S.DG99 T.DC49 G-C WC 19-XIX cWW cW-W 98 S.DG100 T.DC48 G-C WC 19-XIX cWW cW-W 99 S.DG101 T.DC47 G-C WC 19-XIX cWW cW-W 100 S.DG102 T.DC46 G-C WC 19-XIX cWW cW-W 101 S.DA103 T.DT45 A-T WC 20-XX cWW cW-W 102 S.DT104 T.DA44 T-A WC 20-XX cWW cW-W 103 S.DT105 T.DA43 T-A WC 20-XX cWW cW-W 104 S.DA106 T.DT42 A-T WC 20-XX cWW cW-W 105 S.DC107 T.DG41 C-G WC 19-XIX cWW cW-W 106 S.DT108 T.DA40 T-A WC 20-XX cWW cW-W 107 S.DC109 T.DG39 C-G WC 19-XIX cWW cW-W 108 S.DC110 T.DG38 C-G WC 19-XIX cWW cW-W 109 S.DC111 T.DG37 C-G WC 19-XIX cWW cW-W 110 S.DT112 T.DA36 T-A WC 20-XX cWW cW-W 111 S.DA113 T.DT35 A-T WC 20-XX cWW cW-W 112 S.DG114 T.DC34 G-C WC 19-XIX cWW cW-W 113 S.DT115 T.DA33 T-A WC 20-XX cWW cW-W 114 S.DC116 T.DG32 C-G WC 19-XIX cWW cW-W 115 S.DT117 T.DA31 T-A WC 20-XX cWW cW-W 116 S.DC118 T.DG30 C-G WC 19-XIX cWW cW-W 117 S.DC119 T.DG29 C-G WC 19-XIX cWW cW-W 118 S.DA120 T.DT28 A-T WC 20-XX cWW cW-W 119 S.DG121 T.DC27 G-C WC 19-XIX cWW cW-W 120 S.DG122 T.DC26 G-C WC 19-XIX cWW cW-W 121 S.DC123 T.DG25 C-G WC 19-XIX cWW cW-W 122 S.DA124 T.DT24 A-T WC 20-XX cWW cW-W 123 S.DC125 T.DG23 C-G WC 19-XIX cWW cW-W 124 S.DG126 T.DC22 G-C WC 19-XIX cWW cW-W 125 S.DT127 T.DA21 T-A WC 20-XX cWW cW-W 126 S.DG128 T.DC20 G-C WC 19-XIX cWW cW-W 127 S.DT129 T.DA19 T-A WC 20-XX cWW cW-W 128 S.DC130 T.DG18 C-G WC 19-XIX cWW cW-W 129 S.DA131 T.DT17 A-T WC 20-XX cWW cW-W 130 S.DG132 T.DC16 G-C WC 19-XIX cWW cW-W 131 S.DA133 T.DT15 A-T WC 20-XX cWW cW-W 132 S.DT134 T.DA14 T-A WC 20-XX cWW cW-W 133 S.DA135 T.DT13 A-T WC 20-XX cWW cW-W 134 S.DT136 T.DA12 T-A WC 20-XX cWW cW-W 135 S.DA137 T.DT11 A-T WC 20-XX cWW cW-W 136 S.DT138 T.DA10 T-A WC 20-XX cWW cW-W 137 S.DA139 T.DT9 A-T WC 20-XX cWW cW-W 138 S.DC140 T.DG8 C-G WC 19-XIX cWW cW-W 139 S.DA141 T.DT7 A-T WC 20-XX cWW cW-W 140 S.DT142 T.DA6 T-A WC 20-XX cWW cW-W 141 S.DC143 T.DG5 C-G WC 19-XIX cWW cW-W 142 S.DC144 T.DG4 C-G WC 19-XIX cWW cW-W 143 S.DG145 T.DC3 G-C WC 19-XIX cWW cW-W 144 S.DA146 T.DT2 A-T WC 20-XX cWW cW-W 145 S.DT147 T.DA1 T-A WC 20-XX cWW cW-W **************************************************************************** List of 3 base stacks Note: a stack is an ordered list of nucleotides assembled together via base-stacking interactions, regardless of backbone connectivity. Stacking interactions within a stem are *not* included. 1 nts=2 TC I.DT2,I.DC3 2 nts=2 GA J.DG145,J.DA146 3 nts=2 TC S.DT2,S.DC3 **************************************************************************** Nucleotides not involved in stacking interactions nts=1 A T.DA146 **************************************************************************** List of 4 non-loop single-stranded segments 1 nts=1 T I.DT2 2 nts=1 A J.DA146 3 nts=1 T S.DT2 4 nts=1 A T.DA146 **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >4x23 nts=584 [whole] TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT&ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA&TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT&ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA .(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((&))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).&.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((&))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))). >4x23-I #1 nts=146 0.35(2.34) [chain] DNA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT .((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((( >4x23-J #2 nts=146 0.30(2.35) [chain] DNA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA ))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))). >4x23-S #3 nts=146 0.34(2.36) [chain] DNA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT .((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((( >4x23-T #4 nts=146 0.30(2.35) [chain] DNA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA ))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))). **************************************************************************** Summary of structural features of 584 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 T . I.DT2 0.002 syn,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 2 C ( I.DC3 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 3 G ( I.DG4 0.004 anti,BI,canonical,non-pair-contact,helix,stem 4 A ( I.DA5 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 5 G ( I.DG6 0.004 anti,BI,canonical,non-pair-contact,helix,stem 6 A ( I.DA7 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 7 A ( I.DA8 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 8 T ( I.DT9 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 9 C ( I.DC10 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 10 C ( I.DC11 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 11 C ( I.DC12 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 12 G ( I.DG13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 13 G ( I.DG14 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 14 T ( I.DT15 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 15 G ( I.DG16 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 16 C ( I.DC17 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 17 C ( I.DC18 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 18 G ( I.DG19 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 19 A ( I.DA20 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 20 G ( I.DG21 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 21 G ( I.DG22 0.004 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 22 C ( I.DC23 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 23 C ( I.DC24 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 24 G ( I.DG25 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 25 C ( I.DC26 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 26 T ( I.DT27 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 27 C ( I.DC28 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 28 A ( I.DA29 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 29 A ( I.DA30 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 30 T ( I.DT31 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 31 T ( I.DT32 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 32 G ( I.DG33 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 33 G ( I.DG34 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 34 T ( I.DT35 0.003 anti,canonical,non-pair-contact,helix,stem 35 C ( I.DC36 0.003 anti,BI,canonical,non-pair-contact,helix,stem 36 G ( I.DG37 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 37 T ( I.DT38 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 38 A ( I.DA39 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 39 G ( I.DG40 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 40 A ( I.DA41 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 41 C ( I.DC42 0.002 anti,BI,canonical,non-pair-contact,helix,stem 42 A ( I.DA43 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 43 G ( I.DG44 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 44 C ( I.DC45 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 45 T ( I.DT46 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 46 C ( I.DC47 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 47 T ( I.DT48 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 48 A ( I.DA49 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 49 G ( I.DG50 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 50 C ( I.DC51 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 51 A ( I.DA52 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 52 C ( I.DC53 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 53 C ( I.DC54 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 54 G ( I.DG55 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 55 C ( I.DC56 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 56 T ( I.DT57 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 57 T ( I.DT58 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 58 A ( I.DA59 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 59 A ( I.DA60 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 60 A ( I.DA61 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 61 C ( I.DC62 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 62 G ( I.DG63 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 63 C ( I.DC64 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 64 A ( I.DA65 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 65 C ( I.DC66 0.002 anti,BI,canonical,non-pair-contact,helix,stem 66 G ( I.DG67 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 67 T ( I.DT68 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 68 A ( I.DA69 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 69 C ( I.DC70 0.002 anti,BI,canonical,non-pair-contact,helix,stem 70 G ( I.DG71 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 71 C ( I.DC72 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 72 G ( I.DG73 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 73 C ( I.DC74 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 74 T ( I.DT75 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 75 G ( I.DG76 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 76 T ( I.DT77 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 77 C ( I.DC78 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 78 C ( I.DC79 0.003 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem 79 C ( I.DC80 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 80 C ( I.DC81 0.003 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 81 C ( I.DC82 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 82 G ( I.DG83 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 83 C ( I.DC84 0.002 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 84 G ( I.DG85 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 85 T ( I.DT86 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 86 T ( I.DT87 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 87 T ( I.DT88 0.002 anti,BI,canonical,non-pair-contact,helix,stem 88 T ( I.DT89 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 89 A ( I.DA90 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 90 A ( I.DA91 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 91 C ( I.DC92 0.002 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 92 C ( I.DC93 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 93 G ( I.DG94 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 94 C ( I.DC95 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 95 C ( I.DC96 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 96 A ( I.DA97 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 97 A ( I.DA98 0.003 anti,BI,canonical,non-pair-contact,helix,stem 98 G ( I.DG99 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 99 G ( I.DG100 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 100 G ( I.DG101 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 101 G ( I.DG102 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 102 A ( I.DA103 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 103 T ( I.DT104 0.002 anti,BI,canonical,non-pair-contact,helix,stem 104 T ( I.DT105 0.002 anti,canonical,non-pair-contact,helix,stem 105 A ( I.DA106 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 106 C ( I.DC107 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 107 T ( I.DT108 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 108 C ( I.DC109 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 109 C ( I.DC110 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 110 C ( I.DC111 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 111 T ( I.DT112 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 112 A ( I.DA113 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 113 G ( I.DG114 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 114 T ( I.DT115 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 115 C ( I.DC116 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 116 T ( I.DT117 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 117 C ( I.DC118 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 118 C ( I.DC119 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 119 A ( I.DA120 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 120 G ( I.DG121 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 121 G ( I.DG122 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 122 C ( I.DC123 0.002 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 123 A ( I.DA124 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 124 C ( I.DC125 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 125 G ( I.DG126 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 126 T ( I.DT127 0.003 anti,BI,canonical,non-pair-contact,helix,stem 127 G ( I.DG128 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 128 T ( I.DT129 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 129 C ( I.DC130 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 130 A ( I.DA131 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 131 G ( I.DG132 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 132 A ( I.DA133 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 133 T ( I.DT134 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 134 A ( I.DA135 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 135 T ( I.DT136 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 136 A ( I.DA137 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 137 T ( I.DT138 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 138 A ( I.DA139 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 139 C ( I.DC140 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 140 A ( I.DA141 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 141 T ( I.DT142 0.001 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 142 C ( I.DC143 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 143 C ( I.DC144 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 144 G ( I.DG145 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 145 A ( I.DA146 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 146 T ( I.DT147 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 147 A ) J.DA1 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 148 T ) J.DT2 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 149 C ) J.DC3 0.002 anti,BI,canonical,non-pair-contact,helix,stem 150 G ) J.DG4 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 151 G ) J.DG5 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 152 A ) J.DA6 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 153 T ) J.DT7 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 154 G ) J.DG8 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 155 T ) J.DT9 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 156 A ) J.DA10 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 157 T ) J.DT11 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 158 A ) J.DA12 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 159 T ) J.DT13 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 160 A ) J.DA14 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 161 T ) J.DT15 0.002 anti,canonical,non-pair-contact,helix,stem 162 C ) J.DC16 0.002 anti,BI,canonical,non-pair-contact,helix,stem 163 T ) J.DT17 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 164 G ) J.DG18 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 165 A ) J.DA19 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 166 C ) J.DC20 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 167 A ) J.DA21 0.003 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 168 C ) J.DC22 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 169 G ) J.DG23 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 170 T ) J.DT24 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 171 G ) J.DG25 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 172 C ) J.DC26 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 173 C ) J.DC27 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 174 T ) J.DT28 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 175 G ) J.DG29 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 176 G ) J.DG30 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 177 A ) J.DA31 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 178 G ) J.DG32 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 179 A ) J.DA33 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 180 C ) J.DC34 0.002 anti,BI,canonical,non-pair-contact,helix,stem 181 T ) J.DT35 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 182 A ) J.DA36 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 183 G ) J.DG37 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 184 G ) J.DG38 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 185 G ) J.DG39 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 186 A ) J.DA40 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 187 G ) J.DG41 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 188 T ) J.DT42 0.002 anti,BI,canonical,non-pair-contact,helix,stem 189 A ) J.DA43 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 190 A ) J.DA44 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 191 T ) J.DT45 0.002 anti,BI,canonical,non-pair-contact,helix,stem 192 C ) J.DC46 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 193 C ) J.DC47 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 194 C ) J.DC48 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 195 C ) J.DC49 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 196 T ) J.DT50 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 197 T ) J.DT51 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 198 G ) J.DG52 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 199 G ) J.DG53 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 200 C ) J.DC54 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 201 G ) J.DG55 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 202 G ) J.DG56 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 203 T ) J.DT57 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 204 T ) J.DT58 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 205 A ) J.DA59 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 206 A ) J.DA60 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 207 A ) J.DA61 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 208 A ) J.DA62 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 209 C ) J.DC63 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 210 G ) J.DG64 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 211 C ) J.DC65 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 212 G ) J.DG66 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 213 G ) J.DG67 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 214 G ) J.DG68 0.004 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 215 G ) J.DG69 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 216 G ) J.DG70 0.004 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 217 A ) J.DA71 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 218 C ) J.DC72 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 219 A ) J.DA73 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 220 G ) J.DG74 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 221 C ) J.DC75 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 222 G ) J.DG76 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 223 C ) J.DC77 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 224 G ) J.DG78 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 225 T ) J.DT79 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 226 A ) J.DA80 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 227 C ) J.DC81 0.002 anti,BI,canonical,non-pair-contact,helix,stem 228 G ) J.DG82 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 229 T ) J.DT83 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 230 G ) J.DG84 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 231 C ) J.DC85 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 232 G ) J.DG86 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 233 T ) J.DT87 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 234 T ) J.DT88 0.002 anti,BI,canonical,non-pair-contact,helix,stem 235 T ) J.DT89 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 236 A ) J.DA90 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 237 A ) J.DA91 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 238 G ) J.DG92 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 239 C ) J.DC93 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 240 G ) J.DG94 0.003 anti,canonical,non-pair-contact,helix,stem 241 G ) J.DG95 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 242 T ) J.DT96 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 243 G ) J.DG97 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 244 C ) J.DC98 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 245 T ) J.DT99 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 246 A ) J.DA100 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 247 G ) J.DG101 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 248 A ) J.DA102 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 249 G ) J.DG103 0.004 anti,BI,canonical,non-pair-contact,helix,stem 250 C ) J.DC104 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 251 T ) J.DT105 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 252 G ) J.DG106 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 253 T ) J.DT107 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 254 C ) J.DC108 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 255 T ) J.DT109 0.002 anti,BI,canonical,non-pair-contact,helix,stem 256 A ) J.DA110 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 257 C ) J.DC111 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 258 G ) J.DG112 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 259 A ) J.DA113 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 260 C ) J.DC114 0.002 anti,BI,canonical,non-pair-contact,helix,stem 261 C ) J.DC115 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 262 A ) J.DA116 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 263 A ) J.DA117 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 264 T ) J.DT118 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 265 T ) J.DT119 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 266 G ) J.DG120 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 267 A ) J.DA121 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 268 G ) J.DG122 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 269 C ) J.DC123 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 270 G ) J.DG124 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 271 G ) J.DG125 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 272 C ) J.DC126 0.002 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 273 C ) J.DC127 0.002 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 274 T ) J.DT128 0.002 anti,BI,canonical,non-pair-contact,helix,stem 275 C ) J.DC129 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 276 G ) J.DG130 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 277 G ) J.DG131 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 278 C ) J.DC132 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 279 A ) J.DA133 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 280 C ) J.DC134 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 281 C ) J.DC135 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 282 G ) J.DG136 0.004 anti,canonical,non-pair-contact,helix,stem 283 G ) J.DG137 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 284 G ) J.DG138 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 285 A ) J.DA139 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 286 T ) J.DT140 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 287 T ) J.DT141 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 288 C ) J.DC142 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 289 T ) J.DT143 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 290 C ) J.DC144 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 291 G ) J.DG145 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 292 A . J.DA146 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 293 T . S.DT2 0.002 syn,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 294 C ( S.DC3 0.002 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end 295 G ( S.DG4 0.004 anti,BI,canonical,non-pair-contact,helix,stem 296 A ( S.DA5 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 297 G ( S.DG6 0.004 anti,BI,canonical,non-pair-contact,helix,stem 298 A ( S.DA7 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 299 A ( S.DA8 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 300 T ( S.DT9 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 301 C ( S.DC10 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 302 C ( S.DC11 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 303 C ( S.DC12 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 304 G ( S.DG13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 305 G ( S.DG14 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 306 T ( S.DT15 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 307 G ( S.DG16 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 308 C ( S.DC17 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 309 C ( S.DC18 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 310 G ( S.DG19 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 311 A ( S.DA20 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 312 G ( S.DG21 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 313 G ( S.DG22 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 314 C ( S.DC23 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 315 C ( S.DC24 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 316 G ( S.DG25 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 317 C ( S.DC26 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 318 T ( S.DT27 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 319 C ( S.DC28 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 320 A ( S.DA29 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 321 A ( S.DA30 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 322 T ( S.DT31 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 323 T ( S.DT32 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 324 G ( S.DG33 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 325 G ( S.DG34 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 326 T ( S.DT35 0.003 anti,canonical,non-pair-contact,helix,stem 327 C ( S.DC36 0.002 anti,BI,canonical,non-pair-contact,helix,stem 328 G ( S.DG37 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 329 T ( S.DT38 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 330 A ( S.DA39 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 331 G ( S.DG40 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 332 A ( S.DA41 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 333 C ( S.DC42 0.002 anti,BI,canonical,non-pair-contact,helix,stem 334 A ( S.DA43 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 335 G ( S.DG44 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 336 C ( S.DC45 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 337 T ( S.DT46 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 338 C ( S.DC47 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 339 T ( S.DT48 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 340 A ( S.DA49 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 341 G ( S.DG50 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 342 C ( S.DC51 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 343 A ( S.DA52 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 344 C ( S.DC53 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 345 C ( S.DC54 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 346 G ( S.DG55 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 347 C ( S.DC56 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 348 T ( S.DT57 0.001 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 349 T ( S.DT58 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 350 A ( S.DA59 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 351 A ( S.DA60 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 352 A ( S.DA61 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 353 C ( S.DC62 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 354 G ( S.DG63 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 355 C ( S.DC64 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 356 A ( S.DA65 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 357 C ( S.DC66 0.002 anti,BI,canonical,non-pair-contact,helix,stem 358 G ( S.DG67 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 359 T ( S.DT68 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 360 A ( S.DA69 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 361 C ( S.DC70 0.003 anti,BI,canonical,non-pair-contact,helix,stem 362 G ( S.DG71 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 363 C ( S.DC72 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 364 G ( S.DG73 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 365 C ( S.DC74 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 366 T ( S.DT75 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 367 G ( S.DG76 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 368 T ( S.DT77 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 369 C ( S.DC78 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 370 C ( S.DC79 0.003 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem 371 C ( S.DC80 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 372 C ( S.DC81 0.003 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 373 C ( S.DC82 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 374 G ( S.DG83 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 375 C ( S.DC84 0.002 anti,BI,canonical,non-pair-contact,helix,stem 376 G ( S.DG85 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 377 T ( S.DT86 0.001 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 378 T ( S.DT87 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 379 T ( S.DT88 0.002 anti,BI,canonical,non-pair-contact,helix,stem 380 T ( S.DT89 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 381 A ( S.DA90 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 382 A ( S.DA91 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 383 C ( S.DC92 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 384 C ( S.DC93 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 385 G ( S.DG94 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 386 C ( S.DC95 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 387 C ( S.DC96 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 388 A ( S.DA97 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 389 A ( S.DA98 0.003 anti,BI,canonical,non-pair-contact,helix,stem 390 G ( S.DG99 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 391 G ( S.DG100 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 392 G ( S.DG101 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 393 G ( S.DG102 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 394 A ( S.DA103 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 395 T ( S.DT104 0.002 anti,BI,canonical,non-pair-contact,helix,stem 396 T ( S.DT105 0.002 anti,canonical,non-pair-contact,helix,stem 397 A ( S.DA106 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 398 C ( S.DC107 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 399 T ( S.DT108 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 400 C ( S.DC109 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 401 C ( S.DC110 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 402 C ( S.DC111 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 403 T ( S.DT112 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 404 A ( S.DA113 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 405 G ( S.DG114 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 406 T ( S.DT115 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 407 C ( S.DC116 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 408 T ( S.DT117 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 409 C ( S.DC118 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 410 C ( S.DC119 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 411 A ( S.DA120 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 412 G ( S.DG121 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 413 G ( S.DG122 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 414 C ( S.DC123 0.002 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 415 A ( S.DA124 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 416 C ( S.DC125 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 417 G ( S.DG126 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 418 T ( S.DT127 0.002 anti,BI,canonical,non-pair-contact,helix,stem 419 G ( S.DG128 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 420 T ( S.DT129 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 421 C ( S.DC130 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 422 A ( S.DA131 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 423 G ( S.DG132 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 424 A ( S.DA133 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 425 T ( S.DT134 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 426 A ( S.DA135 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 427 T ( S.DT136 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 428 A ( S.DA137 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 429 T ( S.DT138 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 430 A ( S.DA139 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 431 C ( S.DC140 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 432 A ( S.DA141 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 433 T ( S.DT142 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 434 C ( S.DC143 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 435 C ( S.DC144 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 436 G ( S.DG145 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 437 A ( S.DA146 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 438 T ( S.DT147 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 439 A ) T.DA1 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 440 T ) T.DT2 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 441 C ) T.DC3 0.002 anti,BI,canonical,non-pair-contact,helix,stem 442 G ) T.DG4 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 443 G ) T.DG5 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 444 A ) T.DA6 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 445 T ) T.DT7 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 446 G ) T.DG8 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 447 T ) T.DT9 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 448 A ) T.DA10 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 449 T ) T.DT11 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 450 A ) T.DA12 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 451 T ) T.DT13 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 452 A ) T.DA14 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 453 T ) T.DT15 0.003 anti,canonical,non-pair-contact,helix,stem 454 C ) T.DC16 0.002 anti,BI,canonical,non-pair-contact,helix,stem 455 T ) T.DT17 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 456 G ) T.DG18 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 457 A ) T.DA19 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 458 C ) T.DC20 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 459 A ) T.DA21 0.003 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 460 C ) T.DC22 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 461 G ) T.DG23 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 462 T ) T.DT24 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 463 G ) T.DG25 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 464 C ) T.DC26 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 465 C ) T.DC27 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 466 T ) T.DT28 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 467 G ) T.DG29 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 468 G ) T.DG30 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 469 A ) T.DA31 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 470 G ) T.DG32 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 471 A ) T.DA33 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 472 C ) T.DC34 0.002 anti,BI,canonical,non-pair-contact,helix,stem 473 T ) T.DT35 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 474 A ) T.DA36 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 475 G ) T.DG37 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 476 G ) T.DG38 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 477 G ) T.DG39 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 478 A ) T.DA40 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 479 G ) T.DG41 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 480 T ) T.DT42 0.002 anti,BI,canonical,non-pair-contact,helix,stem 481 A ) T.DA43 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 482 A ) T.DA44 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 483 T ) T.DT45 0.002 anti,BI,canonical,non-pair-contact,helix,stem 484 C ) T.DC46 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 485 C ) T.DC47 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 486 C ) T.DC48 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 487 C ) T.DC49 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 488 T ) T.DT50 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 489 T ) T.DT51 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 490 G ) T.DG52 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 491 G ) T.DG53 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 492 C ) T.DC54 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 493 G ) T.DG55 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 494 G ) T.DG56 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 495 T ) T.DT57 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 496 T ) T.DT58 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 497 A ) T.DA59 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 498 A ) T.DA60 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 499 A ) T.DA61 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 500 A ) T.DA62 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 501 C ) T.DC63 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 502 G ) T.DG64 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 503 C ) T.DC65 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 504 G ) T.DG66 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 505 G ) T.DG67 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 506 G ) T.DG68 0.004 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 507 G ) T.DG69 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 508 G ) T.DG70 0.003 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 509 A ) T.DA71 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 510 C ) T.DC72 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 511 A ) T.DA73 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 512 G ) T.DG74 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 513 C ) T.DC75 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 514 G ) T.DG76 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 515 C ) T.DC77 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 516 G ) T.DG78 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 517 T ) T.DT79 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 518 A ) T.DA80 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 519 C ) T.DC81 0.002 anti,BI,canonical,non-pair-contact,helix,stem 520 G ) T.DG82 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 521 T ) T.DT83 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 522 G ) T.DG84 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 523 C ) T.DC85 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 524 G ) T.DG86 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 525 T ) T.DT87 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 526 T ) T.DT88 0.002 anti,BI,canonical,non-pair-contact,helix,stem 527 T ) T.DT89 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 528 A ) T.DA90 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 529 A ) T.DA91 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 530 G ) T.DG92 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 531 C ) T.DC93 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 532 G ) T.DG94 0.004 anti,canonical,non-pair-contact,helix,stem 533 G ) T.DG95 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 534 T ) T.DT96 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 535 G ) T.DG97 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 536 C ) T.DC98 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 537 T ) T.DT99 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 538 A ) T.DA100 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 539 G ) T.DG101 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 540 A ) T.DA102 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 541 G ) T.DG103 0.004 anti,BI,canonical,non-pair-contact,helix,stem 542 C ) T.DC104 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 543 T ) T.DT105 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 544 G ) T.DG106 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 545 T ) T.DT107 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 546 C ) T.DC108 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 547 T ) T.DT109 0.002 anti,BI,canonical,non-pair-contact,helix,stem 548 A ) T.DA110 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 549 C ) T.DC111 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 550 G ) T.DG112 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 551 A ) T.DA113 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 552 C ) T.DC114 0.002 anti,BI,canonical,non-pair-contact,helix,stem 553 C ) T.DC115 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 554 A ) T.DA116 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 555 A ) T.DA117 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 556 T ) T.DT118 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 557 T ) T.DT119 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 558 G ) T.DG120 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 559 A ) T.DA121 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 560 G ) T.DG122 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 561 C ) T.DC123 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 562 G ) T.DG124 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 563 G ) T.DG125 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 564 C ) T.DC126 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 565 C ) T.DC127 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 566 T ) T.DT128 0.002 anti,BI,canonical,non-pair-contact,helix,stem 567 C ) T.DC129 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 568 G ) T.DG130 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 569 G ) T.DG131 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 570 C ) T.DC132 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 571 A ) T.DA133 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 572 C ) T.DC134 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 573 C ) T.DC135 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 574 G ) T.DG136 0.004 anti,canonical,non-pair-contact,helix,stem 575 G ) T.DG137 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 576 G ) T.DG138 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 577 A ) T.DA139 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 578 T ) T.DT140 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 579 T ) T.DT141 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 580 C ) T.DC142 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 581 T ) T.DT143 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 582 C ) T.DC144 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 583 G ) T.DG145 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end 584 A . T.DA146 0.003 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,ss-non-loop **************************************************************************** List of 8 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-stems.pdb -- an ensemble of stems 3 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 4 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 5 dssr-2ndstrs.ct -- secondary structure in connectivity table format 6 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 7 dssr-torsions.txt -- backbone torsion angles and suite names 8 dssr-stacks.pdb -- an ensemble of base stacks